RchiOBHm_Chr5g0046191

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016153
Physical Location & Seq
Forward (+)
42273462 .. 42273830
369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32421

Sequence Viewer

Length: 369 bp
ATGAGCAGCCGGGAGGTGAAATTTAGCTGGACCTCCGCCCTCATCGGCGCCGCTTCTGCCCTAGCCACCACCTCTCTTCTCTCTGCTAAGCCCAAGGACCCCACCTTCGACCTCATCTCCATCGATCTCACCTCCTTCAAGCTCAACCTCCCTCTCCTCGACGCCGGCCTCGTCCTCACCGTCCACATCACCAACCCCAACATCACCCCCATCCACTACTCCTCTACCACCATGTCCATCTTCTACAAAGGCTCCCTCCTCGGCTCCGCCGACATCAAGGCCGGCTCCCAGTCCGCCAAGTCCTGCAAGCTCCTCCGCCTCCCGGCCCGCCTCGACGGCCTCCAGCTAGCCCACCACTGCTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

122

Amino Acids

13.09

Weight (kDa)

9.26

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 60 - 117 7e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44380
fragaria_vesca FvH4_3g25140 FvH4_3g25160
malus_domestica MD03G1147800.v1.1 MD11G1166600.v1.1
prunus_persica Prupe.6G132600_v2.0.a1 Prupe.6G132700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046191 RchiOBHm_Chr5g0046241
rosa_laevigata RLG00000034378
rosa_multiflora Rmu_sc0017875.1_g000001
rosa_roxburghii Rroxscaffold_1G00035440
rosa_rugosa Rorug05G0224500
rosa_samantha Rh5DG324600
rosa_wichuraiana Rw5G028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AciI CCGC 6 cut(s) 36, 51, 267, 294, 316, 328
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 2 cut(s) 48, 162
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 4 cut(s) 27, 142, 310, 346
AluI AGCT 4 cut(s) 27, 142, 310, 346
AoxI GGCC 4 cut(s) 166, 279, 324, 337
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 20
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 3 cut(s) 30, 97, 325
AsuC2I CCSGG 2 cut(s) 11, 323
AsuHPI GGTGA 5 cut(s) 28, 121, 169, 181, 196
AsuNHI GCTAGC 1 cut(s) 346
AvaII GGWCC 2 cut(s) 30, 97
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 18
BccI CCATC 3 cut(s) 128, 218, 245
BceAI ACGGC 1 cut(s) 352
BcnI CCSGG 2 cut(s) 11, 323
BfaI CTAG 2 cut(s) 62, 347
BfoI RGCGCY 1 cut(s) 51
BglI GCCNNNNNGGC 1 cut(s) 336
BisI GCNGC 2 cut(s) 7, 51
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 2 cut(s) 8, 52
Bme1390I CCNGG 2 cut(s) 11, 323
Bme18I GGWCC 2 cut(s) 30, 97
BmgT120I GGNCC 3 cut(s) 30, 97, 325
BmiI GGNNCC 5 cut(s) 49, 99, 253, 265, 286
BmrFI CCNGG 2 cut(s) 11, 323
BmrI ACTGGG 1 cut(s) 283
BmtI GCTAGC 1 cut(s) 350
BmuI ACTGGG 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 326
Bpu1102I GCTNAGC 1 cut(s) 87
BpuMI CCSGG 2 cut(s) 11, 323
Bsa29I ATCGAT 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 48, 162
BsaJI CCNNGG 2 cut(s) 93, 259
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 2 cut(s) 164, 281
Bse1I ACTGG 1 cut(s) 289
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 93, 259
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 4 cut(s) 146, 211, 248, 302
BseXI GCAGC 1 cut(s) 18
BshFI GGCC 4 cut(s) 168, 281, 326, 339
BshNI GGYRCC 1 cut(s) 47
BshVI ATCGAT 1 cut(s) 123
BsiSI CCGG 4 cut(s) 10, 165, 282, 323
BslI CCNNNNNNNGG 1 cut(s) 322
BsnI GGCC 4 cut(s) 168, 281, 326, 339
Bsp143I GATC 1 cut(s) 124
Bsp1720I GCTNAGC 1 cut(s) 87
BspACI CCGC 6 cut(s) 36, 51, 267, 294, 316, 328
BspANI GGCC 4 cut(s) 168, 281, 326, 339
BspDI ATCGAT 1 cut(s) 123
BspLI GGNNCC 5 cut(s) 49, 99, 253, 265, 286
BspOI GCTAGC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 47
BsrFI RCCGGY 2 cut(s) 164, 281
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 2 cut(s) 164, 281
BssECI CCNNGG 2 cut(s) 93, 259
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 2 cut(s) 48, 162
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 81
BstACI GRCGYC 2 cut(s) 48, 162
BstC8I GCNNGC 5 cut(s) 166, 283, 308, 328, 348
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 56, 336
BstSCI CCNGG 2 cut(s) 9, 321
BstV1I GCAGC 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 4 cut(s) 168, 281, 326, 339
BsuTUI ATCGAT 1 cut(s) 123
BtsCI GGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 5 cut(s) 166, 283, 308, 328, 348
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 2 cut(s) 164, 281
Cfr13I GGNCC 3 cut(s) 30, 97, 325
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 170
CviAII CATG 1 cut(s) 232
DdeI CTNAG 1 cut(s) 87
DinI GGCGCC 1 cut(s) 49
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 4 cut(s) 25, 256, 283, 305
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 30, 97
EcoO109I RGGNCCY 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 235
FaiI YATR 1 cut(s) 233
FatI CATG 1 cut(s) 231
FauI CCCGC 1 cut(s) 335
Fnu4HI GCNGC 2 cut(s) 7, 51
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 7, 51
FspBI CTAG 2 cut(s) 62, 347
GlaI GCGC 1 cut(s) 49
GluI GCNGC 2 cut(s) 7, 51
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 4 cut(s) 168, 281, 326, 339
HapII CCGG 4 cut(s) 10, 165, 282, 323
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 2 cut(s) 48, 162
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HpaII CCGG 4 cut(s) 10, 165, 282, 323
HphI GGTGA 5 cut(s) 28, 121, 169, 181, 196
Hpy166II GTNNAC 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 2 cut(s) 164, 338
HpyAV CCTTC 2 cut(s) 115, 145
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 336
HpyF3I CTNAG 1 cut(s) 87
Hsp92I GRCGYC 2 cut(s) 48, 162
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 1 cut(s) 48
KasI GGCGCC 1 cut(s) 47
KroI GCCGGC 2 cut(s) 164, 281
KroNI GCCGGC 2 cut(s) 166, 283
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 4 cut(s) 257, 269, 290, 315
LpnPI CCDG 8 cut(s) 13, 23, 178, 295, 302, 316, 336, 356
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 2 cut(s) 62, 347
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 2 cut(s) 68, 232
MluCI AATT 1 cut(s) 20
Mly113I GGCGCC 1 cut(s) 48
MroNI GCCGGC 2 cut(s) 164, 281
MspI CCGG 4 cut(s) 10, 165, 282, 323
MspR9I CCNGG 2 cut(s) 11, 323
MwoI GCNNNNNNNGC 2 cut(s) 56, 336
NaeI GCCGGC 2 cut(s) 166, 283
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 2 cut(s) 11, 323
NdeII GATC 1 cut(s) 124
NgoMIV GCCGGC 2 cut(s) 164, 281
NheI GCTAGC 1 cut(s) 346
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 5 cut(s) 49, 99, 253, 265, 286
NmeAIII GCCGAG 1 cut(s) 240
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 177, 267
PdiI GCCGGC 2 cut(s) 166, 283
PkrI GCNGC 2 cut(s) 8, 52
PluTI GGCGCC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 5 cut(s) 49, 99, 253, 265, 286
PspPI GGNCC 3 cut(s) 30, 97, 325
PspPPI RGGWCCY 1 cut(s) 97
SatI GCNGC 2 cut(s) 7, 51
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 3 cut(s) 30, 97, 325
ScrFI CCNGG 2 cut(s) 11, 323
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 2 cut(s) 30, 97
Sse9I AATT 1 cut(s) 20
SsiI CCGC 6 cut(s) 36, 51, 267, 294, 316, 328
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 2 cut(s) 62, 347
StyD4I CCNGG 2 cut(s) 9, 321
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 4 cut(s) 108, 123, 159, 333
TasI AATT 1 cut(s) 20
TauI GCSGC 1 cut(s) 53
TscAI CASTG 1 cut(s) 362
TseI GCWGC 1 cut(s) 6
TspRI CASTG 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 30, 97
XapI RAATTY 1 cut(s) 20
XspI CTAG 2 cut(s) 62, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.