Rorug05G0224500

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016153
Physical Location & Seq
Reverse (-)
23282637 .. 23283438
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0224500.1

Sequence Viewer

Length: 726 bp
ATGTCAAGAAAGTCCAAGAACACGTACACGTGGAAGGGTTTCGGCGAGGTCCCTAACGCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGTGGCCTGCAATAACAACAACAACAATCCCCTGGATGAGACCAAGAGGGAAAAGTCTCTGGCGCTTCTGGCGCAGAATTTCGTGAAGCTGTTCGTGTGTACCGGATCGGAATCGGAATCGATTTCTCTTGATGAAGCTGCGAAATTACTGCTTGGAGTAGGGGATGCACAGAATGTATCAGTGATGAGGACGAAGGGAAGCCCGTACAGGTGGTTGGGGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCGGAGCCGAATTTGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATCTGACGAATGCGAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGGCTGTGGGGCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTCCTTTCGCTCCGGTGGCGGTTCCAAGAGCTAGGAAGGGTGTTGACATCAACAAGGTTTGCTGGGAGAGTCTTGGGGCTTATTATCGGCCTCAATATCAGAACCAAGGGATGAAGGAGCTGTTTTCACATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

241

Amino Acids

26.92

Weight (kDa)

9.01

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44380
fragaria_vesca FvH4_3g25140 FvH4_3g25160
malus_domestica MD03G1147800.v1.1 MD11G1166600.v1.1
prunus_persica Prupe.6G132600_v2.0.a1 Prupe.6G132700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046191 RchiOBHm_Chr5g0046241
rosa_laevigata RLG00000034378
rosa_multiflora Rmu_sc0017875.1_g000001
rosa_roxburghii Rroxscaffold_1G00035440
rosa_rugosa Rorug05G0224500
rosa_samantha Rh5DG324600
rosa_wichuraiana Rw5G028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 548
AclWI GGATC 3 cut(s) 94, 96, 217
AcsI RAATTY 4 cut(s) 181, 349, 355, 367
AcuI CTGAAG 1 cut(s) 83
AcvI CACGTG 1 cut(s) 30
AfaI GTAC 3 cut(s) 26, 205, 311
AflIII ACRYGT 2 cut(s) 21, 27
AgsI TTSAA 3 cut(s) 349, 355, 455
AjnI CCWGG 2 cut(s) 84, 135
AjuI GAANNNNNNNTTGG 1 cut(s) 703
AluBI AGCT 7 cut(s) 70, 193, 242, 393, 519, 560, 649
AluI AGCT 7 cut(s) 70, 193, 242, 393, 519, 560, 649
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 137, 165
AlwI GGATC 3 cut(s) 94, 96, 217
AoxI GGCC 3 cut(s) 82, 108, 617
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 4 cut(s) 181, 349, 355, 367
Asp700I GAANNNNTTC 2 cut(s) 38, 194
AspLEI GCGC 2 cut(s) 169, 178
AspS9I GGNCC 2 cut(s) 49, 530
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 476
AsuII TTCGAA 1 cut(s) 512
AvaII GGWCC 2 cut(s) 49, 530
BanII GRGCYC 1 cut(s) 72
BbrPI CACGTG 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 335, 482
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 2 cut(s) 86, 137
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 137, 165
BfaI CTAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 170
BglII AGATCT 1 cut(s) 403
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 3 cut(s) 86, 104, 137
Bme18I GGWCC 2 cut(s) 49, 530
BmgT120I GGNCC 2 cut(s) 49, 530
BmiI GGNNCC 3 cut(s) 51, 363, 552
BmrFI CCNGG 3 cut(s) 86, 104, 137
BmsI GCATC 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 675
BpuMI CCSGG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 224
BsaAI YACGTR 2 cut(s) 24, 30
BsaBI GATNNNNATC 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 135, 634
BsaWI WCCGGW 2 cut(s) 206, 541
Bse1I ACTGG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 214
BseBI CCWGG 2 cut(s) 86, 137
BseCI ATCGAT 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 135, 634
BseGI GGATG 5 cut(s) 145, 274, 493, 645, 681
BseJI GATNNNNATC 1 cut(s) 214
BseMII CTCAG 2 cut(s) 85, 690
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 2 cut(s) 403, 442
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 591
BshFI GGCC 3 cut(s) 84, 110, 619
BshVI ATCGAT 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 3 cut(s) 104, 207, 542
BslFI GGGAC 2 cut(s) 35, 412
BsmAI GTCTC 2 cut(s) 137, 165
BsmFI GGGAC 2 cut(s) 35, 412
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 3 cut(s) 84, 110, 619
Bso31I GGTCTC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 5 cut(s) 88, 99, 209, 403, 457
BspACI CCGC 1 cut(s) 548
BspANI GGCC 3 cut(s) 84, 110, 619
BspCNI CTCAG 2 cut(s) 84, 691
BspDI ATCGAT 1 cut(s) 224
BspLI GGNNCC 3 cut(s) 51, 363, 552
BspPI GGATC 3 cut(s) 94, 96, 217
BspQI GCTCTTC 1 cut(s) 509
BspT104I TTCGAA 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 2 cut(s) 135, 634
BssMI GATC 5 cut(s) 88, 99, 209, 403, 457
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 2 cut(s) 86, 137
Bst6I CTCTTC 4 cut(s) 331, 380, 440, 509
BstBAI YACGTR 2 cut(s) 24, 30
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 112, 378
BstDEI CTNAG 3 cut(s) 71, 381, 699
BstF5I GGATG 5 cut(s) 145, 274, 493, 645, 681
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 2 cut(s) 169, 178
BstKTI GATC 5 cut(s) 91, 102, 212, 406, 460
BstMAI GTCTC 2 cut(s) 137, 165
BstMBI GATC 5 cut(s) 88, 99, 209, 403, 457
BstMWI GCNNNNNNNGC 3 cut(s) 173, 175, 545
BstNI CCWGG 2 cut(s) 86, 137
BstSCI CCNGG 3 cut(s) 84, 102, 135
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 2 cut(s) 88, 403
BstYI RGATCY 2 cut(s) 88, 403
Bsu15I ATCGAT 1 cut(s) 224
BsuRI GGCC 3 cut(s) 84, 110, 619
BsuTUI ATCGAT 1 cut(s) 224
BtsCI GGATG 5 cut(s) 145, 274, 493, 645, 681
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 112, 378
CfoI GCGC 2 cut(s) 169, 178
Cfr13I GGNCC 2 cut(s) 49, 530
ClaI ATCGAT 1 cut(s) 224
Csp6I GTAC 3 cut(s) 25, 204, 310
CviQI GTAC 3 cut(s) 25, 204, 310
DdeI CTNAG 3 cut(s) 71, 381, 699
DpnI GATC 5 cut(s) 90, 101, 211, 405, 459
DpnII GATC 5 cut(s) 88, 99, 209, 403, 457
Eam1104I CTCTTC 4 cut(s) 331, 380, 440, 509
EarI CTCTTC 4 cut(s) 331, 380, 440, 509
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 634
Eco147I AGGCCT 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 49, 530
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 83
Eco72I CACGTG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 84, 135
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 634
FaiI YATR 1 cut(s) 663
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 2 cut(s) 35, 412
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 5 cut(s) 152, 281, 500, 652, 688
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 561
GlaI GCGC 2 cut(s) 168, 177
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 595
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 3 cut(s) 84, 110, 619
HapII CCGG 3 cut(s) 104, 207, 542
HhaI GCGC 2 cut(s) 169, 178
Hin6I GCGC 2 cut(s) 167, 176
HinP1I GCGC 2 cut(s) 167, 176
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 94, 215, 221, 598, 706
HpaII CCGG 3 cut(s) 104, 207, 542
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 3 cut(s) 27, 204, 574
Hpy188III TCNNGA 5 cut(s) 6, 187, 233, 455, 723
Hpy8I GTNNAC 3 cut(s) 27, 204, 574
HpyAV CCTTC 7 cut(s) 28, 58, 74, 292, 496, 559, 637
HpyCH4IV ACGT 2 cut(s) 23, 29
HpyCH4V TGCA 3 cut(s) 114, 272, 480
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 175, 545
HpyF3I CTNAG 3 cut(s) 71, 381, 699
HpySE526I ACGT 2 cut(s) 23, 29
HspAI GCGC 2 cut(s) 167, 176
Kzo9I GATC 5 cut(s) 88, 99, 209, 403, 457
LguI GCTCTTC 1 cut(s) 509
LmnI GCTCC 7 cut(s) 67, 361, 373, 390, 429, 544, 646
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 561
MaeII ACGT 2 cut(s) 23, 29
MalI GATC 5 cut(s) 90, 101, 211, 405, 459
MboI GATC 5 cut(s) 88, 99, 209, 403, 457
MboII GAAGA 6 cut(s) 89, 348, 397, 457, 526, 715
MflI RGATCY 2 cut(s) 88, 403
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 7 cut(s) 181, 248, 349, 355, 367, 481, 711
MlyI GAGTC 2 cut(s) 88, 607
MnlI CCTC 7 cut(s) 40, 144, 285, 381, 420, 460, 630
MroXI GAANNNNTTC 2 cut(s) 38, 194
MspI CCGG 3 cut(s) 104, 207, 542
MspR9I CCNGG 3 cut(s) 86, 104, 137
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 2 cut(s) 86, 137
MwoI GCNNNNNNNGC 3 cut(s) 173, 175, 545
NciI CCSGG 1 cut(s) 104
NdeII GATC 5 cut(s) 88, 99, 209, 403, 457
NlaIV GGNNCC 3 cut(s) 51, 363, 552
NspV TTCGAA 1 cut(s) 512
PceI AGGCCT 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 509
PctI GAATGC 1 cut(s) 418
PdmI GAANNNNTTC 2 cut(s) 38, 194
PfeI GAWTC 3 cut(s) 215, 221, 706
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 2 cut(s) 88, 606
PmaCI CACGTG 1 cut(s) 30
PmlI CACGTG 1 cut(s) 30
PpsI GAGTC 2 cut(s) 88, 606
Ppu21I YACGTR 2 cut(s) 24, 30
PpuMI RGGWCCY 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 84, 135
PspCI CACGTG 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 591
PspGI CCWGG 2 cut(s) 84, 135
PspN4I GGNNCC 3 cut(s) 51, 363, 552
PspPI GGNCC 2 cut(s) 49, 530
PspPPI RGGWCCY 1 cut(s) 49
PsuI RGATCY 2 cut(s) 88, 403
RsaI GTAC 3 cut(s) 26, 205, 311
RsaNI GTAC 3 cut(s) 25, 204, 310
SacI GAGCTC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 509
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 5 cut(s) 88, 99, 209, 403, 457
Sau96I GGNCC 2 cut(s) 49, 530
SchI GAGTC 2 cut(s) 88, 607
ScrFI CCNGG 3 cut(s) 86, 104, 137
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 512
SinI GGWCC 2 cut(s) 49, 530
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
Sse9I AATT 7 cut(s) 181, 248, 349, 355, 367, 481, 711
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 1 cut(s) 548
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 72
StuI AGGCCT 1 cut(s) 84
StyD4I CCNGG 3 cut(s) 84, 102, 135
StyI CCWWGG 1 cut(s) 634
TaiI ACGT 2 cut(s) 26, 32
TaqI TCGA 2 cut(s) 224, 512
TasI AATT 7 cut(s) 181, 248, 349, 355, 367, 481, 711
TfiI GAWTC 3 cut(s) 215, 221, 706
TscAI CASTG 1 cut(s) 291
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 252, 656
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 2 cut(s) 49, 530
XapI RAATTY 4 cut(s) 181, 349, 355, 367
XmnI GAANNNNTTC 2 cut(s) 38, 194
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.