MD03G1147800.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016153
Physical Location & Seq
Reverse (-)
16344750 .. 16345301
552 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1147800.v1.1.491

Sequence Viewer

Length: 552 bp
ATGGGCAAAAAGGTCAAATGGAGCTGGACCTCCGCCGCAATCGGAGCGGCATCGGCTCTAGCCATGACGGCGCTCTTGTCGTCAAAGCCCAAAGATCCAACCTTCCACCTCATCTCAATCAACCTTACCTCCTTCAAGCTCAACCTCCCAGTCCTCGAAGCCGACCTCATCCTCACCGTACATGTCACCAACCCCAACATCACCCCCGTCCACTACTCCTCCACCGCCATGTCCATCTTCTATCACGGCTCCCTTCTCGGCTCTGCCCAAGTCCAGGCCGGCTCTCAGCCCCCCAAATCGTGCCAGCTGCTCCGGCTGCCGGCTCGGCTCGACGGGCTGCAGCTGGCCCAGCACGCTGCTAGCTTTGTTGCCGACGTGGCGAAGCGGGAGATGGTGCTCGACGCCGCTGTGGATATCGCGGGCACGGCGAGGGTTTTGCTGTGGGATCACAAGTTTAAGGTGCACGTGGATAGTCACGTGACGGTTGATCCGGTTTTTCTTGATGTCATTGAACAGGAAAGTAAGTCCGAGATGGAGATTTTTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

184

Amino Acids

19.81

Weight (kDa)

6.7

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 59 - 156 1.5e-12 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44380
fragaria_vesca FvH4_3g25140 FvH4_3g25160
malus_domestica MD03G1147800.v1.1 MD11G1166600.v1.1
prunus_persica Prupe.6G132600_v2.0.a1 Prupe.6G132700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046191 RchiOBHm_Chr5g0046241
rosa_laevigata RLG00000034378
rosa_multiflora Rmu_sc0017875.1_g000001
rosa_roxburghii Rroxscaffold_1G00035440
rosa_rugosa Rorug05G0224500
rosa_samantha Rh5DG324600
rosa_wichuraiana Rw5G028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 419
AciI CCGC 7 cut(s) 33, 36, 47, 225, 385, 405, 419
AclWI GGATC 3 cut(s) 89, 453, 482
AcvI CACGTG 2 cut(s) 466, 478
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 274, 319
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 2 cut(s) 136, 512
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 5 cut(s) 24, 139, 307, 343, 363
AluI AGCT 5 cut(s) 24, 139, 307, 343, 363
Alw21I GWGCWC 2 cut(s) 399, 465
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 3 cut(s) 89, 453, 482
AoxI GGCC 2 cut(s) 276, 345
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 5 cut(s) 307, 316, 337, 340, 356
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 27, 346
AsuHPI GGTGA 3 cut(s) 166, 178, 193
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 1 cut(s) 27
BaeGI GKGCMC 2 cut(s) 425, 465
BbrPI CACGTG 2 cut(s) 466, 478
Bbv12I GWGCWC 2 cut(s) 399, 465
BbvI GCAGC 5 cut(s) 294, 303, 324, 343, 352
BccI CCATC 3 cut(s) 242, 385, 526
BceAI ACGGC 3 cut(s) 84, 262, 441
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 275
BfaI CTAG 2 cut(s) 59, 360
BfmI CTRYAG 1 cut(s) 338
BfoI RGCGCY 1 cut(s) 74
BglI GCCNNNNNGGC 3 cut(s) 68, 325, 377
BisI GCNGC 8 cut(s) 36, 48, 308, 317, 338, 341, 357, 405
BlsI GCNGC 8 cut(s) 37, 49, 309, 318, 339, 342, 358, 406
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 27, 346
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 275
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 59
BmtI GCTAGC 1 cut(s) 363
BmuI ACTGGG 1 cut(s) 143
BsaAI YACGTR 2 cut(s) 466, 478
BsaHI GRCGYC 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 319
Bse118I RCCGGY 2 cut(s) 278, 319
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 274, 319
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 208
BseSI GKGCMC 2 cut(s) 425, 465
BseXI GCAGC 5 cut(s) 294, 303, 324, 343, 352
BseYI CCCAGC 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 2 cut(s) 278, 347
BsiHKAI GWGCWC 2 cut(s) 399, 465
BsiSI CCGG 4 cut(s) 279, 313, 320, 491
BslI CCNNNNNNNGG 2 cut(s) 274, 319
BsnI GGCC 2 cut(s) 278, 347
Bsp1286I GDGCHC 3 cut(s) 399, 425, 465
Bsp143I GATC 3 cut(s) 94, 445, 487
BspACI CCGC 7 cut(s) 33, 36, 47, 225, 385, 405, 419
BspANI GGCC 2 cut(s) 278, 347
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 1 cut(s) 250
BspMAI CTGCAG 1 cut(s) 342
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 3 cut(s) 89, 453, 482
BsrBI CCGCTC 1 cut(s) 47
BsrFI RCCGGY 2 cut(s) 278, 319
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 2 cut(s) 278, 319
BssMI GATC 3 cut(s) 94, 445, 487
BssNI GRCGYC 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 178, 484
BstACI GRCGYC 1 cut(s) 402
BstBAI YACGTR 2 cut(s) 466, 478
BstC8I GCNNGC 7 cut(s) 280, 305, 321, 345, 354, 361, 421
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 419
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 3 cut(s) 97, 448, 490
BstMBI GATC 3 cut(s) 94, 445, 487
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 338
BstSLI GKGCMC 2 cut(s) 425, 465
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 5 cut(s) 294, 303, 324, 343, 352
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BsuRI GGCC 2 cut(s) 278, 347
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 7 cut(s) 280, 305, 321, 345, 354, 361, 421
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 2 cut(s) 278, 319
Cfr13I GGNCC 2 cut(s) 27, 346
CseI GACGC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 179
CviAII CATG 3 cut(s) 64, 182, 229
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 285
DpnI GATC 3 cut(s) 96, 447, 489
DpnII GATC 3 cut(s) 94, 445, 487
EciI GGCGGA 1 cut(s) 22
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 27
Eco72I CACGTG 2 cut(s) 466, 478
EcoRII CCWGG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 415
FaeI CATG 3 cut(s) 67, 185, 232
FaiI YATR 3 cut(s) 65, 183, 230
FatI CATG 3 cut(s) 63, 181, 228
FauI CCCGC 2 cut(s) 378, 412
Fnu4HI GCNGC 8 cut(s) 36, 48, 308, 317, 338, 341, 357, 405
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 8 cut(s) 36, 48, 308, 317, 338, 341, 357, 405
FspBI CTAG 2 cut(s) 59, 360
GlaI GCGC 1 cut(s) 72
GluI GCNGC 8 cut(s) 36, 48, 308, 317, 338, 341, 357, 405
GsaI CCCAGC 1 cut(s) 352
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 2 cut(s) 278, 347
HapII CCGG 4 cut(s) 279, 313, 320, 491
HgaI GACGC 1 cut(s) 410
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 3 cut(s) 67, 185, 232
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HpaII CCGG 4 cut(s) 279, 313, 320, 491
HphI GGTGA 3 cut(s) 166, 178, 193
Hpy166II GTNNAC 2 cut(s) 211, 463
Hpy188I TCNGA 2 cut(s) 44, 529
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 2 cut(s) 211, 463
Hpy99I CGWCG 3 cut(s) 335, 377, 404
HpyAV CCTTC 3 cut(s) 112, 142, 263
HpyCH4III ACNGT 2 cut(s) 178, 484
HpyCH4IV ACGT 3 cut(s) 375, 465, 477
HpyCH4V TGCA 2 cut(s) 340, 463
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 3 cut(s) 375, 465, 477
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 3 cut(s) 67, 185, 232
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 2 cut(s) 278, 319
KroNI GCCGGC 2 cut(s) 280, 321
Kzo9I GATC 3 cut(s) 94, 445, 487
LmnI GCTCC 4 cut(s) 21, 44, 254, 315
Lsp1109I GCAGC 5 cut(s) 294, 303, 324, 343, 352
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 59, 360
MaeII ACGT 3 cut(s) 375, 465, 477
MaeIII GTNAC 3 cut(s) 184, 473, 478
MalI GATC 3 cut(s) 96, 447, 489
MbiI CCGCTC 1 cut(s) 47
MboI GATC 3 cut(s) 94, 445, 487
MboII GAAGA 1 cut(s) 229
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 3 cut(s) 399, 425, 465
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 9 cut(s) 40, 119, 139, 155, 164, 176, 182, 229, 423
MroNI GCCGGC 2 cut(s) 278, 319
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 3 cut(s) 307, 343, 407
MspI CCGG 4 cut(s) 279, 313, 320, 491
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 419
NaeI GCCGGC 2 cut(s) 280, 321
NdeII GATC 3 cut(s) 94, 445, 487
NgoMIV GCCGGC 2 cut(s) 278, 319
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 3 cut(s) 67, 185, 232
NlaIV GGNNCC 1 cut(s) 250
NmeAIII GCCGAG 2 cut(s) 237, 304
NmuCI GTSAC 3 cut(s) 184, 473, 478
NspI RCATGY 1 cut(s) 185
PciI ACATGT 1 cut(s) 181
PdiI GCCGGC 2 cut(s) 280, 321
PkrI GCNGC 8 cut(s) 37, 49, 309, 318, 339, 342, 358, 406
PmaCI CACGTG 2 cut(s) 466, 478
PmlI CACGTG 2 cut(s) 466, 478
Ppu21I YACGTR 2 cut(s) 466, 478
PscI ACATGT 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 273
PspCI CACGTG 2 cut(s) 466, 478
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 27, 346
PstI CTGCAG 1 cut(s) 342
PsuI RGATCY 1 cut(s) 94
PvuII CAGCTG 2 cut(s) 307, 343
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 8 cut(s) 36, 48, 308, 317, 338, 341, 357, 405
Sau3AI GATC 3 cut(s) 94, 445, 487
Sau96I GGNCC 2 cut(s) 27, 346
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 3 cut(s) 399, 425, 465
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 338
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 227
SsiI CCGC 7 cut(s) 33, 36, 47, 225, 385, 405, 419
SspMI CTAG 2 cut(s) 59, 360
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 178, 484
TaiI ACGT 3 cut(s) 378, 468, 480
TaqI TCGA 3 cut(s) 156, 330, 399
TauI GCSGC 3 cut(s) 38, 50, 407
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseFI GTSAC 3 cut(s) 184, 473, 478
TseI GCWGC 5 cut(s) 307, 316, 337, 340, 356
Tsp45I GTSAC 3 cut(s) 184, 473, 478
VneI GTGCAC 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 27
XceI RCATGY 1 cut(s) 185
XspI CTAG 2 cut(s) 59, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.