MD11G1166600.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016153
Physical Location & Seq
Reverse (-)
17649723 .. 17650280
558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1166600.v1.1.491

Sequence Viewer

Length: 558 bp
ATGGACTTGAAGGTGGAATGGAGCTGGAACAAGGCTCTCATCGGGGCGGCGACCGCCGTAGCCGCAACAGCAGTAATATCTTCCAAGCCAAAGGACCCCACCTTCGACGTCATGTCCATCAAGTTGACCTCCTTCAAGCTCAACTTCCCACTCCTCGACGCCGAGCTCATCCTCACCGTCCAAGTCACCAACCCCAACATCGCCCCCATCCACTACTCCTCCACCACCATGTCCATCTTCTACAAGGGCTCCCTCCTCGGTACCGCCCAAGTCGAGGCAGGCTCTCAGCCCGCCAAGTCCTCCCAGAAGATCCTCCTTCCAGCTCGCCTCTACGGCCTCCAGATGGCCCACCACGCCGCTAGCTTTATTGCCGACGCGGCGAGGCGGGAGATGGTGCTGGACGCCGCTGTGGATATTGTCGGTGCGGCAAGGGTTTTGTGGTGGGACCACCAGTTTAAGATCCACGTGGATAGTCACTTGACCGTTGATCCGGTTTTTCTTGATGTTATTGATCAGGAAAATAAGTCTGAGATGGAGATTAGTCTTCTTCATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

186

Amino Acids

20.3

Weight (kDa)

5.93

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 59 - 144 1e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44380
fragaria_vesca FvH4_3g25140 FvH4_3g25160
malus_domestica MD03G1147800.v1.1 MD11G1166600.v1.1
prunus_persica Prupe.6G132600_v2.0.a1 Prupe.6G132700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046191 RchiOBHm_Chr5g0046241
rosa_laevigata RLG00000034378
rosa_multiflora Rmu_sc0017875.1_g000001
rosa_roxburghii Rroxscaffold_1G00035440
rosa_rugosa Rorug05G0224500
rosa_samantha Rh5DG324600
rosa_wichuraiana Rw5G028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AccII CGCG 1 cut(s) 377
AclWI GGATC 3 cut(s) 304, 454, 482
AcvI CACGTG 1 cut(s) 466
AcyI GRCGYC 3 cut(s) 108, 159, 402
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 2 cut(s) 274, 343
AgsI TTSAA 2 cut(s) 10, 136
AhdI GACNNNNNGTC 1 cut(s) 112
AluBI AGCT 5 cut(s) 24, 139, 166, 323, 363
AluI AGCT 5 cut(s) 24, 139, 166, 323, 363
Alw21I GWGCWC 1 cut(s) 168
AlwI GGATC 3 cut(s) 304, 454, 482
AoxI GGCC 2 cut(s) 334, 345
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp718I GGTACC 1 cut(s) 260
AspS9I GGNCC 3 cut(s) 94, 346, 445
AsuHPI GGTGA 2 cut(s) 166, 178
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 2 cut(s) 94, 445
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 2 cut(s) 168, 251
BbrPI CACGTG 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 6 cut(s) 125, 215, 242, 337, 385, 526
BceAI ACGGC 2 cut(s) 41, 349
BclI TGATCA 1 cut(s) 511
BfaI CTAG 1 cut(s) 360
BglI GCCNNNNNGGC 2 cut(s) 333, 377
BisI GCNGC 6 cut(s) 48, 63, 357, 378, 405, 426
BlsI GCNGC 6 cut(s) 49, 64, 358, 379, 406, 427
Bme18I GGWCC 2 cut(s) 94, 445
BmeRI GACNNNNNGTC 1 cut(s) 112
BmgT120I GGNCC 3 cut(s) 94, 346, 445
BmiI GGNNCC 4 cut(s) 96, 250, 262, 446
BmtI GCTAGC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 536
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpmI CTGGAG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 466
BsaHI GRCGYC 3 cut(s) 108, 159, 402
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 343
Bse1I ACTGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 2 cut(s) 168, 207
BseLI CCNNNNNNNGG 2 cut(s) 274, 343
BseMII CTCAG 2 cut(s) 299, 519
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 3 cut(s) 143, 208, 245
Bsh1236I CGCG 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 336, 347
BshNI GGYRCC 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 274, 343
BsmFI GGGAC 1 cut(s) 458
BsnI GGCC 2 cut(s) 336, 347
Bsp1286I GDGCHC 2 cut(s) 168, 251
Bsp143I GATC 4 cut(s) 309, 459, 487, 511
BspANI GGCC 2 cut(s) 336, 347
BspCNI CTCAG 2 cut(s) 298, 520
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 4 cut(s) 96, 250, 262, 446
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 3 cut(s) 304, 454, 482
BspT107I GGYRCC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 4 cut(s) 309, 459, 487, 511
BssNI GRCGYC 3 cut(s) 108, 159, 402
Bst4CI ACNGT 2 cut(s) 178, 484
BstACI GRCGYC 3 cut(s) 108, 159, 402
BstBAI YACGTR 1 cut(s) 466
BstC8I GCNNGC 4 cut(s) 280, 291, 325, 361
BstDEI CTNAG 2 cut(s) 285, 528
BstF5I GGATG 2 cut(s) 168, 207
BstFNI CGCG 1 cut(s) 377
BstKTI GATC 4 cut(s) 312, 462, 490, 514
BstMBI GATC 4 cut(s) 309, 459, 487, 511
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 6 cut(s) 53, 62, 68, 333, 353, 377
BstUI CGCG 1 cut(s) 377
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 309, 459
BstYI RGATCY 2 cut(s) 309, 459
BsuRI GGCC 2 cut(s) 336, 347
BtgZI GCGATG 1 cut(s) 184
BtsCI GGATG 2 cut(s) 168, 207
Cac8I GCNNGC 4 cut(s) 280, 291, 325, 361
Cfr13I GGNCC 3 cut(s) 94, 346, 445
CseI GACGC 3 cut(s) 167, 383, 410
Csp6I GTAC 1 cut(s) 261
CviAII CATG 2 cut(s) 112, 229
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 2 cut(s) 285, 528
DpnI GATC 4 cut(s) 311, 461, 489, 513
DpnII GATC 4 cut(s) 309, 459, 487, 511
DriI GACNNNNNGTC 1 cut(s) 112
Eam1105I GACNNNNNGTC 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 168, 251
Eco47I GGWCC 2 cut(s) 94, 445
Eco53kI GAGCTC 1 cut(s) 166
Eco72I CACGTG 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 168, 251
FaeI CATG 2 cut(s) 115, 232
FaiI YATR 3 cut(s) 113, 230, 552
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 458
FatI CATG 2 cut(s) 111, 228
FauI CCCGC 2 cut(s) 298, 378
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 6 cut(s) 48, 63, 357, 378, 405, 426
FokI GGATG 2 cut(s) 155, 194
FriOI GRGCYC 2 cut(s) 168, 251
Fsp4HI GCNGC 6 cut(s) 48, 63, 357, 378, 405, 426
FspBI CTAG 1 cut(s) 360
GluI GCNGC 6 cut(s) 48, 63, 357, 378, 405, 426
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 2 cut(s) 336, 347
HapII CCGG 1 cut(s) 491
HgaI GACGC 3 cut(s) 167, 383, 410
Hin1I GRCGYC 3 cut(s) 108, 159, 402
Hin1II CATG 2 cut(s) 115, 232
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HpaII CCGG 1 cut(s) 491
HphI GGTGA 2 cut(s) 166, 178
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 3 cut(s) 340, 500, 515
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 3 cut(s) 110, 161, 377
HpyAV CCTTC 4 cut(s) 4, 112, 142, 326
HpyCH4III ACNGT 2 cut(s) 178, 484
HpyCH4IV ACGT 2 cut(s) 108, 465
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 62, 68, 333, 353, 377
HpyF3I CTNAG 2 cut(s) 285, 528
HpySE526I ACGT 2 cut(s) 108, 465
Hsp92I GRCGYC 3 cut(s) 108, 159, 402
Hsp92II CATG 2 cut(s) 115, 232
KpnI GGTACC 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 309, 459, 487, 511
LmnI GCTCC 2 cut(s) 21, 254
LpnPI CCDG 9 cut(s) 10, 264, 317, 333, 353, 383, 464, 500, 504
MaeI CTAG 1 cut(s) 360
MaeII ACGT 2 cut(s) 108, 465
MaeIII GTNAC 2 cut(s) 184, 473
MalI GATC 4 cut(s) 311, 461, 489, 513
MboI GATC 4 cut(s) 309, 459, 487, 511
MboII GAAGA 5 cut(s) 72, 229, 319, 536, 539
MflI RGATCY 2 cut(s) 309, 459
MhlI GDGCHC 2 cut(s) 168, 251
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 6 cut(s) 53, 62, 68, 333, 353, 377
NdeII GATC 4 cut(s) 309, 459, 487, 511
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 2 cut(s) 115, 232
NlaIV GGNNCC 4 cut(s) 96, 250, 262, 446
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 2 cut(s) 184, 473
PkrI GCNGC 6 cut(s) 49, 64, 358, 379, 406, 427
PmaCI CACGTG 1 cut(s) 466
PmlI CACGTG 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 466
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 94
PspCI CACGTG 1 cut(s) 466
PspN4I GGNNCC 4 cut(s) 96, 250, 262, 446
PspPI GGNCC 3 cut(s) 94, 346, 445
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 2 cut(s) 309, 459
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 6 cut(s) 48, 63, 357, 378, 405, 426
Sau3AI GATC 4 cut(s) 309, 459, 487, 511
Sau96I GGNCC 3 cut(s) 94, 346, 445
SduI GDGCHC 2 cut(s) 168, 251
SinI GGWCC 2 cut(s) 94, 445
SmiMI CAYNNNNRTG 1 cut(s) 227
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 168
TaaI ACNGT 2 cut(s) 178, 484
TaiI ACGT 2 cut(s) 111, 468
TaqI TCGA 3 cut(s) 105, 156, 273
TauI GCSGC 6 cut(s) 50, 65, 359, 380, 407, 428
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseFI GTSAC 2 cut(s) 184, 473
Tsp45I GTSAC 2 cut(s) 184, 473
TspDTI ATGAA 1 cut(s) 539
VpaK11BI GGWCC 2 cut(s) 94, 445
XspI CTAG 1 cut(s) 360
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.