AT3G45050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007829
Physical Location & Seq
Forward (+)
16475957 .. 16477524
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45050.4

Sequence Viewer

Length: 393 bp
ATGGAGCTTAGTCTCATCAAGCTGCAATCTTTTTCGTTCCCTTCTTCAGTTTCAAGTGTGAAGGATGTGAGGTTCTTAAACCTTGATTTGAAATCCTCACATCAGAGAGCTAAGAGATCATCAACTGTTGTTCCTGCTTTAGCTGAAACAGCTGTTTCTATAGCGATTGCAGCCACGGTTGTTGGTACTGCAGCTACTATTCTTGTTAGGAGAAATAACAAAGCCTCCGAAGAAGCCGAGGCTTCTATGAAAGAATGTGAAGCTTGTCTCGGTTCAGGAATATGTCCTGAATGCAAAGGTGAAGGATTTGTATTAAAGAAACTATCAGATGCAAATGCTGAGAAAGCAAGACTTGCAGCTAAAAACATGGCCACGCGATATACAGCCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.75

Weight (kDa)

9.18

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7895 PF25433 83 - 155 7.9e-39 Domain of unknown function (DUF7895)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 376
AcoI YGGCCR 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 187
AgsI TTSAA 2 cut(s) 54, 91
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 8 cut(s) 7, 22, 110, 143, 152, 194, 263, 359
AluI AGCT 8 cut(s) 7, 22, 110, 143, 152, 194, 263, 359
Alw26I GTCTC 2 cut(s) 17, 272
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 4 cut(s) 22, 170, 191, 356
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 311
BalI TGGCCA 1 cut(s) 371
BbvI GCAGC 4 cut(s) 9, 182, 203, 368
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 17, 272
BfmI CTRYAG 2 cut(s) 159, 189
BisI GCNGC 4 cut(s) 23, 171, 192, 357
BlsI GCNGC 4 cut(s) 24, 172, 193, 358
Bme1390I CCNGG 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 319
BpuMI CCSGG 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 174, 237
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
BseDI CCNNGG 2 cut(s) 174, 237
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 330
BseXI GCAGC 4 cut(s) 9, 182, 203, 368
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 387
BsmAI GTCTC 2 cut(s) 17, 272
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 371
Bsp143I GATC 1 cut(s) 116
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 376
BspMAI CTGCAG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 174, 237
BssMI GATC 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 127, 178
BstAPI GCANNNNNTGC 1 cut(s) 353
BstDEI CTNAG 3 cut(s) 8, 111, 339
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 376
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 2 cut(s) 17, 272
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 4 cut(s) 149, 170, 344, 353
BstSCI CCNGG 1 cut(s) 386
BstSFI CTRYAG 2 cut(s) 159, 189
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 4 cut(s) 9, 182, 203, 368
BsuRI GGCC 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 70
Csp6I GTAC 1 cut(s) 186
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 1 cut(s) 367
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 3 cut(s) 8, 111, 339
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 30
FaeI CATG 1 cut(s) 370
FaiI YATR 5 cut(s) 161, 248, 283, 368, 381
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 1 cut(s) 366
Fnu4HI GCNGC 4 cut(s) 23, 171, 192, 357
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 4 cut(s) 23, 171, 192, 357
GluI GCNGC 4 cut(s) 23, 171, 192, 357
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 387
Hin1II CATG 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 261
HpaII CCGG 1 cut(s) 387
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 3 cut(s) 105, 229, 328
Hpy188III TCNNGA 2 cut(s) 276, 287
HpyAV CCTTC 3 cut(s) 51, 55, 296
HpyCH4III ACNGT 2 cut(s) 127, 178
HpyCH4V TGCA 6 cut(s) 25, 170, 191, 294, 332, 356
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 170, 344, 353
HpyF3I CTNAG 3 cut(s) 8, 111, 339
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 147, 261, 300
Lsp1109I GCAGC 4 cut(s) 9, 182, 203, 368
LweI GCATC 1 cut(s) 319
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 36, 242
MlsI TGGCCA 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 371
MnlI CCTC 4 cut(s) 63, 106, 232, 235
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 2 cut(s) 77, 314
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 1 cut(s) 296
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 4 cut(s) 149, 170, 344, 353
NciI CCSGG 1 cut(s) 388
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 262
PctI GAATGC 1 cut(s) 296
PkrI GCNGC 4 cut(s) 24, 172, 193, 358
PstI CTGCAG 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 77, 314
SatI GCNGC 4 cut(s) 23, 171, 192, 357
Sau3AI GATC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 388
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 2 cut(s) 159, 189
StyD4I CCNGG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 127, 178
Tru1I TTAA 2 cut(s) 77, 314
Tru9I TTAA 2 cut(s) 77, 314
TseI GCWGC 4 cut(s) 22, 170, 191, 356
TspDTI ATGAA 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.