Rh5BG389400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007829
Physical Location & Seq
Forward (+)
62295697 .. 62313160
17464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG389400.1

Sequence Viewer

Length: 513 bp
ATGATGATGGAGTTGGCAGTGAGGAAACTACCAGTTCTCTCCTTCTCCAAGATTGATGTAAAGCCACAAGAACAAAGAAGAAGAGTATCTTTTGTATCTTCTGCTCTACCTGAAACAGTGGCTTCAGTGGCAATTGCTGCTACAGTTGTTGGTGCAGCAGCTACCATTCTTGTGAGGAGAAACAAAGCTGCAGAGGCAGCTGAGGTGCCTATGAAAGACTGTGAAGCCTGTGGTGGTTCTGGTATATGTCCTGAATGCAAAGGTGAAGGCTTTGTCCTTAAGAGACTGTCAGATGAAAGTGCTGAGCGGGCAAGATTAGCATCTAAGAATGCAGCCACTCGATATACTGCAGGAGAAACATACAAATGTAGAGCAAAGACAGAGGAACTCCAAGCTTACCCACTTGCTTCAAGACTCTCTAGGAGGAGACTCCAAGAGTTTCTTCAGATTAGTCCTCATGAAAATGACTTGAGTGAGACCATTTGCTCACTGAACTTTGCAAGTAGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.54

Weight (kDa)

9.13

Isoelectric Point (pI)

60.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7895 PF25433 71 - 122 9.2e-23 Domain of unknown function (DUF7895)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccBSI CCGCTC 1 cut(s) 307
AciI CCGC 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 108, 428
AflII CTTAAG 1 cut(s) 278
AgsI TTSAA 1 cut(s) 411
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AluBI AGCT 4 cut(s) 161, 188, 200, 395
AluI AGCT 4 cut(s) 161, 188, 200, 395
Alw26I GTCTC 3 cut(s) 277, 421, 470
ApeKI GCWGC 6 cut(s) 137, 155, 158, 188, 197, 332
AsuHPI GGTGA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 6 cut(s) 124, 167, 170, 175, 209, 344
BcoDI GTCTC 3 cut(s) 277, 421, 470
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 3 cut(s) 141, 189, 348
BfrI CTTAAG 1 cut(s) 278
BisI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 6 cut(s) 139, 157, 160, 190, 199, 334
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 490
BsaBI GATNNNNATC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 470
Bse1I ACTGG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 319
BseMII CTCAG 2 cut(s) 192, 294
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 190, 439
BseXI GCAGC 6 cut(s) 124, 167, 170, 175, 209, 344
BsgI GTGCAG 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 205
BsmAI GTCTC 3 cut(s) 277, 421, 470
BsmI GAATGC 2 cut(s) 260, 334
Bso31I GGTCTC 1 cut(s) 470
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 1 cut(s) 307
BspCNI CTCAG 2 cut(s) 193, 295
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 207
BspMAI CTGCAG 2 cut(s) 193, 352
BspT107I GGYRCC 1 cut(s) 205
BspTI CTTAAG 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 32
Bst4CI ACNGT 4 cut(s) 118, 145, 221, 288
Bst6I CTCTTC 1 cut(s) 76
BstAFI CTTAAG 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 201, 303, 324
BstMAI GTCTC 3 cut(s) 277, 421, 470
BstMWI GCNNNNNNNGC 6 cut(s) 128, 137, 194, 197, 308, 317
BstSFI CTRYAG 3 cut(s) 141, 189, 348
BstV1I GCAGC 6 cut(s) 124, 167, 170, 175, 209, 344
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 4 cut(s) 24, 123, 132, 488
Cac8I GCNNGC 1 cut(s) 309
CciI TCATGA 1 cut(s) 457
CviAII CATG 1 cut(s) 458
CviJI RGCY 9 cut(s) 64, 122, 161, 188, 200, 227, 270, 335, 395
CviKI_1 RGCY 9 cut(s) 64, 122, 161, 188, 200, 227, 270, 335, 395
DdeI CTNAG 3 cut(s) 201, 303, 324
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 470
Eco57I CTGAAG 2 cut(s) 108, 428
FaeI CATG 1 cut(s) 461
FaiI YATR 6 cut(s) 212, 245, 247, 345, 361, 459
FalI AAGNNNNNCTT 4 cut(s) 73, 105, 426, 458
FatI CATG 1 cut(s) 457
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
Fsp4HI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
FspBI CTAG 1 cut(s) 420
GluI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
Hin1II CATG 1 cut(s) 461
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 2 cut(s) 414, 429
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 2 cut(s) 292, 447
Hpy188III TCNNGA 3 cut(s) 251, 411, 458
HpyAV CCTTC 2 cut(s) 52, 260
HpyCH4III ACNGT 4 cut(s) 118, 145, 221, 288
HpyCH4V TGCA 6 cut(s) 155, 191, 258, 332, 350, 500
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 137, 194, 197, 308, 317
HpyF3I CTNAG 3 cut(s) 201, 303, 324
Hsp92II CATG 1 cut(s) 461
LpnPI CCDG 6 cut(s) 45, 123, 225, 241, 264, 336
Lsp1109I GCAGC 6 cut(s) 124, 167, 170, 175, 209, 344
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 420
MbiI CCGCTC 1 cut(s) 307
MboII GAAGA 4 cut(s) 90, 90, 93, 434
MfeI CAATTG 1 cut(s) 132
MluCI AATT 1 cut(s) 132
MlyI GAGTC 2 cut(s) 408, 423
MnlI CCTC 8 cut(s) 15, 168, 187, 196, 376, 417, 465, 500
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 3 cut(s) 170, 364, 462
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 278
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 2 cut(s) 260, 334
MwoI GCNNNNNNNGC 6 cut(s) 128, 137, 194, 197, 308, 317
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 1 cut(s) 207
PagI TCATGA 1 cut(s) 457
PctI GAATGC 2 cut(s) 260, 334
PkrI GCNGC 6 cut(s) 139, 157, 160, 190, 199, 334
PleI GAGTC 2 cut(s) 408, 423
PpsI GAGTC 2 cut(s) 408, 423
PspN4I GGNNCC 1 cut(s) 207
PstI CTGCAG 2 cut(s) 193, 352
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 3 cut(s) 170, 364, 462
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
SchI GAGTC 2 cut(s) 408, 423
SetI ASST 7 cut(s) 112, 163, 190, 202, 207, 265, 397
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 3 cut(s) 141, 189, 348
SmiMI CAYNNNNRTG 3 cut(s) 170, 364, 462
SmlI CTYRAG 2 cut(s) 278, 469
SmoI CTYRAG 2 cut(s) 278, 469
Sse9I AATT 1 cut(s) 132
SsiI CCGC 1 cut(s) 307
SspMI CTAG 1 cut(s) 420
TaaI ACNGT 4 cut(s) 118, 145, 221, 288
TaqI TCGA 1 cut(s) 340
TasI AATT 1 cut(s) 132
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 4 cut(s) 24, 123, 132, 495
TseI GCWGC 6 cut(s) 137, 155, 158, 188, 197, 332
TspDTI ATGAA 3 cut(s) 227, 309, 474
TspRI CASTG 4 cut(s) 24, 123, 132, 495
Vha464I CTTAAG 1 cut(s) 278
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.