Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007829

Physical Location & Seq

Genomic Coordinates Reverse (-)

28035924 .. 28037718

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGATCTTCAAGGCACTCATTACCCATTTTTGTTCTTCAGTTGATGTAAAGCCACAAGAACAAAGAAGAAGAGTATCTTTTGTATCTTCTGCTCTACCCGAAACAGTGGCTTCAGTGGCAATTGCTGCTACAGTTGTTGGTGCAGCAGCTACCATTCTTGTGAGGAGAAACAAAGCTGCAGAGGCAGCTGAGGTGCCTATGAAAGACTGTGAAGCCTGTGGTGGTTCTGGTATATGTCCTGAATGCAGAGGTGAAGGCTTTGTCCTTAAGAGACTGTCAGATGAAAGTGCTGAGCGGGCAAGATTAGCTTCTAAGAATGCAGCCACTCGATACACTGCAGGGCTTCCAAAGAAATGGAGCTACTGCACAAAGTGCTCTTCTGCCCGATCATGCCGTACCTGCGATGGCCGTGGAAAGATAGTTTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.37

Weight (kDa)

9.41

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7895	PF25433	68 - 141	1.8e-40	Domain of unknown function (DUF7895)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45050 AT3G45050 AT3G45050 AT3G45050
fragaria_vesca	FvH4_3g31190 FvH4_3g31190 FvH4_3g31190 FvH4_3g31190
malus_domestica	MD03G1125100.v1.1 MD11G1142300.v1.1
prunus_persica	Prupe.6G107600_v2.0.a1 Prupe.6G107600_v2.0.a1 Prupe.6G107600_v2.0.a1
pyrus_communis	pycom11g11790
rosa_chinensis	RchiOBHm_Chr5g0057841
rosa_laevigata	RLG00000035182
rosa_multiflora	Rmu_sc0010457.1_g000005
rosa_roxburghii	Rroxscaffold_1G00022660
rosa_rugosa	Rorug05G0310000
rosa_samantha	Rh5AG378200 Rh5BG389400 Rh5CG413700 Rh5DG404300
rosa_wichuraiana	Rw5G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	298
AciI	CCGC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	24, 99
AdeI	CACNNNGTG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	400
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	5 cut(s)	152, 179, 191, 311, 363
AluI	AGCT	5 cut(s)	152, 179, 191, 311, 363
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	268
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	6 cut(s)	128, 146, 149, 179, 188, 323
AsuHPI	GGTGA	2 cut(s)	16, 266
BanI	GGYRCC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	6 cut(s)	115, 158, 161, 166, 200, 335
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	2 cut(s)	381, 396
BcoDI	GTCTC	1 cut(s)	268
BfmI	CTRYAG	3 cut(s)	132, 180, 339
BfrI	CTTAAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	410
BisI	GCNGC	6 cut(s)	129, 147, 150, 180, 189, 324
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	6 cut(s)	130, 148, 151, 181, 190, 325
BmiI	GGNNCC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	183, 285
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	6 cut(s)	115, 158, 161, 166, 200, 335
BsgI	GTGCAG	2 cut(s)	165, 352
BshFI	GGCC	1 cut(s)	411
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	268
BsmI	GAATGC	2 cut(s)	251, 325
BsnI	GGCC	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	6, 389
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	2 cut(s)	184, 286
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	2 cut(s)	184, 343
BspMI	ACCTGC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	6, 389
Bst4CI	ACNGT	4 cut(s)	109, 136, 212, 279
Bst6I	CTCTTC	2 cut(s)	67, 385
BstAFI	CTTAAG	1 cut(s)	269
BstAPI	GCANNNNNTGC	2 cut(s)	128, 375
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	192, 294, 315
BstDSI	CCRYGG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	9, 392
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	2 cut(s)	6, 389
BstMWI	GCNNNNNNNGC	8 cut(s)	119, 128, 185, 188, 299, 308, 375, 402
BstSFI	CTRYAG	3 cut(s)	132, 180, 339
BstV1I	GCAGC	6 cut(s)	115, 158, 161, 166, 200, 335
BstXI	CCANNNNNNTGG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	412
BtgZI	GCGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	114, 123, 336
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	1 cut(s)	393
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	3 cut(s)	192, 294, 315
DpnI	GATC	2 cut(s)	8, 391
DpnII	GATC	2 cut(s)	6, 389
DraIII	CACNNNGTG	1 cut(s)	375
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	2 cut(s)	67, 385
EarI	CTCTTC	2 cut(s)	67, 385
Eco57I	CTGAAG	2 cut(s)	24, 99
FaeI	CATG	1 cut(s)	396
FaiI	YATR	4 cut(s)	203, 236, 238, 394
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 295, 327
FatI	CATG	1 cut(s)	392
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	129, 147, 150, 180, 189, 324
Fsp4HI	GCNGC	6 cut(s)	129, 147, 150, 180, 189, 324
GluI	GCNGC	6 cut(s)	129, 147, 150, 180, 189, 324
HaeIII	GGCC	1 cut(s)	411
Hin1II	CATG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	16, 266
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	4 cut(s)	109, 136, 212, 279
HpyCH4V	TGCA	6 cut(s)	146, 182, 249, 323, 341, 369
HpyF10VI	GCNNNNNNNGC	8 cut(s)	119, 128, 185, 188, 299, 308, 375, 402
HpyF3I	CTNAG	3 cut(s)	192, 294, 315
Hsp92II	CATG	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	6, 389
LguI	GCTCTTC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	360
LpnPI	CCDG	5 cut(s)	216, 232, 255, 327, 415
Lsp1109I	GCAGC	6 cut(s)	115, 158, 161, 166, 200, 335
MalI	GATC	2 cut(s)	8, 391
MbiI	CCGCTC	1 cut(s)	298
MboI	GATC	2 cut(s)	6, 389
MboII	GAAGA	5 cut(s)	30, 81, 81, 84, 372
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	1 cut(s)	123
MnlI	CCTC	4 cut(s)	159, 178, 187, 245
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	2 cut(s)	251, 325
MwoI	GCNNNNNNNGC	8 cut(s)	119, 128, 185, 188, 299, 308, 375, 402
NdeII	GATC	2 cut(s)	6, 389
NlaIII	CATG	1 cut(s)	396
NlaIV	GGNNCC	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	385
PctI	GAATGC	2 cut(s)	251, 325
PkrI	GCNGC	6 cut(s)	130, 148, 151, 181, 190, 325
PspN4I	GGNNCC	1 cut(s)	198
PstI	CTGCAG	2 cut(s)	184, 343
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	6 cut(s)	129, 147, 150, 180, 189, 324
Sau3AI	GATC	2 cut(s)	6, 389
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	8 cut(s)	154, 181, 193, 198, 256, 313, 365, 404
SfcI	CTRYAG	3 cut(s)	132, 180, 339
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	298
TaaI	ACNGT	4 cut(s)	109, 136, 212, 279
TaqI	TCGA	1 cut(s)	331
TasI	AATT	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	3 cut(s)	114, 123, 343
TseI	GCWGC	6 cut(s)	128, 146, 149, 179, 188, 323
TspDTI	ATGAA	2 cut(s)	218, 300
TspRI	CASTG	3 cut(s)	114, 123, 343
Vha464I	CTTAAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.