Rh5CG413700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007829
Physical Location & Seq
Forward (+)
55992831 .. 55998073
5243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG413700.1

Sequence Viewer

Length: 444 bp
ATGATGATGGAGTTGGCTGTGAGGAAACTACCAGTTCTCTCCTTCTCCAAGATTGATGTAAAGCCACAAGAACAAAGAAGAAGAGTATCTTTTGTATCTTCTGCTCTACCTGAAACAGTGGCTTCAGTGGCAATTGCTGCTACAGTAGTTGGTGCAGCAGCAACCATTCTTGTGAGGAGAAACAAAGCTGCAGAGGCAGCTGAGGTGCCTATGAAAGACTGTGAAGCCTGTGGTGGTTCTGGTATATGTCCTGAATGCAAAGGTGAAGGCTTTGTCCTTAAGAGACTGTCAGATGAAAGTGCTGAGCGGGCAAGATTAGCATCTAAGAATGCAGCCACTCGATACACTGCAGGGCTTCCAAAGAAATGGAGCTACTGCACAAAGTGCTCTTCTGCCCGATCATGCCGTACCTGCGATGGCCGTGGAAAGATAGTTTTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.74

Weight (kDa)

9.56

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7895 PF25433 71 - 144 1.1e-40 Domain of unknown function (DUF7895)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 205
AccBSI CCGCTC 1 cut(s) 307
AciI CCGC 1 cut(s) 307
AcoI YGGCCR 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 384
AfaI GTAC 1 cut(s) 409
AflII CTTAAG 1 cut(s) 278
AluBI AGCT 3 cut(s) 188, 200, 372
AluI AGCT 3 cut(s) 188, 200, 372
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 6 cut(s) 137, 155, 158, 188, 197, 332
AsuHPI GGTGA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 389
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 6 cut(s) 124, 167, 170, 175, 209, 344
BccI CCATC 1 cut(s) 410
BceAI ACGGC 2 cut(s) 390, 405
BcoDI GTCTC 1 cut(s) 277
BfmI CTRYAG 3 cut(s) 141, 189, 348
BfrI CTTAAG 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 419
BisI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 6 cut(s) 139, 157, 160, 190, 199, 334
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 421
BseJI GATNNNNATC 1 cut(s) 319
BseMII CTCAG 2 cut(s) 192, 294
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 6 cut(s) 124, 167, 170, 175, 209, 344
BsgI GTGCAG 2 cut(s) 174, 361
BshFI GGCC 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 277
BsmI GAATGC 2 cut(s) 260, 334
BsnI GGCC 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 1 cut(s) 398
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 2 cut(s) 193, 295
BspLI GGNNCC 1 cut(s) 207
BspMAI CTGCAG 2 cut(s) 193, 352
BspMI ACCTGC 1 cut(s) 419
BspQI GCTCTTC 1 cut(s) 394
BspT107I GGYRCC 1 cut(s) 205
BspTI CTTAAG 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 1 cut(s) 398
Bst4CI ACNGT 4 cut(s) 118, 145, 221, 288
Bst6I CTCTTC 2 cut(s) 76, 394
BstAFI CTTAAG 1 cut(s) 278
BstAPI GCANNNNNTGC 2 cut(s) 137, 384
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 201, 303, 324
BstDSI CCRYGG 1 cut(s) 421
BstKTI GATC 1 cut(s) 401
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 398
BstMWI GCNNNNNNNGC 8 cut(s) 128, 137, 194, 197, 308, 317, 384, 411
BstSFI CTRYAG 3 cut(s) 141, 189, 348
BstV1I GCAGC 6 cut(s) 124, 167, 170, 175, 209, 344
BstXI CCANNNNNNTGG 1 cut(s) 366
BsuRI GGCC 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 421
BtgZI GCGATG 1 cut(s) 429
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 3 cut(s) 123, 132, 345
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 309
Csp6I GTAC 1 cut(s) 408
CviAII CATG 1 cut(s) 402
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 3 cut(s) 201, 303, 324
DpnI GATC 1 cut(s) 400
DpnII GATC 1 cut(s) 398
DraIII CACNNNGTG 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 76, 394
EarI CTCTTC 2 cut(s) 76, 394
Eco57I CTGAAG 1 cut(s) 108
FaeI CATG 1 cut(s) 405
FaiI YATR 4 cut(s) 212, 245, 247, 403
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FatI CATG 1 cut(s) 401
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
Fsp4HI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
GluI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
HaeIII GGCC 1 cut(s) 420
Hin1II CATG 1 cut(s) 405
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 52, 260
HpyCH4III ACNGT 4 cut(s) 118, 145, 221, 288
HpyCH4V TGCA 6 cut(s) 155, 191, 258, 332, 350, 378
HpyF10VI GCNNNNNNNGC 8 cut(s) 128, 137, 194, 197, 308, 317, 384, 411
HpyF3I CTNAG 3 cut(s) 201, 303, 324
Hsp92II CATG 1 cut(s) 405
Kzo9I GATC 1 cut(s) 398
LguI GCTCTTC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 7 cut(s) 45, 123, 225, 241, 264, 336, 424
Lsp1109I GCAGC 6 cut(s) 124, 167, 170, 175, 209, 344
LweI GCATC 1 cut(s) 329
MalI GATC 1 cut(s) 400
MbiI CCGCTC 1 cut(s) 307
MboI GATC 1 cut(s) 398
MboII GAAGA 4 cut(s) 90, 90, 93, 381
MfeI CAATTG 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 1 cut(s) 132
MnlI CCTC 4 cut(s) 15, 168, 187, 196
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 278
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 2 cut(s) 260, 334
MwoI GCNNNNNNNGC 8 cut(s) 128, 137, 194, 197, 308, 317, 384, 411
NdeII GATC 1 cut(s) 398
NlaIII CATG 1 cut(s) 405
NlaIV GGNNCC 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 394
PctI GAATGC 2 cut(s) 260, 334
PkrI GCNGC 6 cut(s) 139, 157, 160, 190, 199, 334
PspN4I GGNNCC 1 cut(s) 207
PstI CTGCAG 2 cut(s) 193, 352
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 6 cut(s) 138, 156, 159, 189, 198, 333
Sau3AI GATC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 389
SetI ASST 7 cut(s) 112, 190, 202, 207, 265, 374, 413
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 3 cut(s) 141, 189, 348
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 132
SsiI CCGC 1 cut(s) 307
TaaI ACNGT 4 cut(s) 118, 145, 221, 288
TaqI TCGA 1 cut(s) 340
TasI AATT 1 cut(s) 132
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 3 cut(s) 123, 132, 352
TseI GCWGC 6 cut(s) 137, 155, 158, 188, 197, 332
TspDTI ATGAA 2 cut(s) 227, 309
TspRI CASTG 3 cut(s) 123, 132, 352
Vha464I CTTAAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.