RLG00000035182

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007829
Physical Location & Seq
Forward (+)
62413047 .. 62417745
4699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035182

Sequence Viewer

Length: 441 bp
ATGATGGAGTTGGCTGTGAGGAAACTACCAGTTCTCTCCTTCCCCAAGATTGATGTAAAGCCACAAGAACAAAGAAGAAGAGTATCTTTTGTATCTTCTGCTCTACCCGAAACAGTGGCTTCAGTGGCAATTGCTGCTACAGTTGTTGGTGCAGCAGCTACCATTCTTGTGAGGAGAAACAAAGCTGCAGAGGCAGCTGAGGTGCCTATGAAAGACTGTGAAGCCTGTGGTGGTTCTGGTATATGTCCTGAATGCAAAGGTGAAGGCTTTGTCCTTAAGAGACTGTCAGATGAAAGTGCTGAGCGGGCAAGATTAGCTTCTAAGAATGCAGCCACTCGATACACTGCAGGGCTTCCAAAGAAATGGAGCTACTGCACAAAGTGCTCTTCTGCCCGATCATGCCGTACCTGCGATGGTCGTGGGAAGATAGTTTTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.62

Weight (kDa)

9.56

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7895 PF25433 70 - 143 1.1e-40 Domain of unknown function (DUF7895)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 304
AciI CCGC 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 105
AdeI CACNNNGTG 1 cut(s) 381
AfaI GTAC 1 cut(s) 406
AflII CTTAAG 1 cut(s) 275
AluBI AGCT 5 cut(s) 158, 185, 197, 317, 369
AluI AGCT 5 cut(s) 158, 185, 197, 317, 369
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 274
ApeKI GCWGC 6 cut(s) 134, 152, 155, 185, 194, 329
AsuHPI GGTGA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 6 cut(s) 121, 164, 167, 172, 206, 341
BccI CCATC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 387
BcoDI GTCTC 1 cut(s) 274
BfmI CTRYAG 3 cut(s) 138, 186, 345
BfrI CTTAAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 416
BisI GCNGC 6 cut(s) 135, 153, 156, 186, 195, 330
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 6 cut(s) 136, 154, 157, 187, 196, 331
BmiI GGNNCC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 189, 291
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 6 cut(s) 121, 164, 167, 172, 206, 341
BsgI GTGCAG 2 cut(s) 171, 358
BshNI GGYRCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 274
BsmI GAATGC 2 cut(s) 257, 331
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 395
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 1 cut(s) 304
BspCNI CTCAG 2 cut(s) 190, 292
BspLI GGNNCC 1 cut(s) 204
BspMAI CTGCAG 2 cut(s) 190, 349
BspMI ACCTGC 1 cut(s) 416
BspQI GCTCTTC 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 202
BspTI CTTAAG 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 29
BssMI GATC 1 cut(s) 395
Bst4CI ACNGT 4 cut(s) 115, 142, 218, 285
Bst6I CTCTTC 2 cut(s) 73, 391
BstAFI CTTAAG 1 cut(s) 275
BstAPI GCANNNNNTGC 2 cut(s) 134, 381
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 198, 300, 321
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 395
BstMWI GCNNNNNNNGC 8 cut(s) 125, 134, 191, 194, 305, 314, 381, 408
BstSFI CTRYAG 3 cut(s) 138, 186, 345
BstV1I GCAGC 6 cut(s) 121, 164, 167, 172, 206, 341
BstXI CCANNNNNNTGG 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 120, 129, 342
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 405
CviAII CATG 1 cut(s) 399
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 3 cut(s) 198, 300, 321
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
DraIII CACNNNGTG 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 73, 391
EarI CTCTTC 2 cut(s) 73, 391
Eco57I CTGAAG 1 cut(s) 105
FaeI CATG 1 cut(s) 402
FaiI YATR 4 cut(s) 209, 242, 244, 400
FalI AAGNNNNNCTT 4 cut(s) 70, 102, 301, 333
FatI CATG 1 cut(s) 398
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 6 cut(s) 135, 153, 156, 186, 195, 330
Fsp4HI GCNGC 6 cut(s) 135, 153, 156, 186, 195, 330
GluI GCNGC 6 cut(s) 135, 153, 156, 186, 195, 330
Hin1II CATG 1 cut(s) 402
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 289, 440
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 49, 257
HpyCH4III ACNGT 4 cut(s) 115, 142, 218, 285
HpyCH4V TGCA 6 cut(s) 152, 188, 255, 329, 347, 375
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 134, 191, 194, 305, 314, 381, 408
HpyF3I CTNAG 3 cut(s) 198, 300, 321
Hsp92II CATG 1 cut(s) 402
Kzo9I GATC 1 cut(s) 395
LguI GCTCTTC 1 cut(s) 391
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 6 cut(s) 42, 222, 238, 261, 333, 421
Lsp1109I GCAGC 6 cut(s) 121, 164, 167, 172, 206, 341
MalI GATC 1 cut(s) 397
MbiI CCGCTC 1 cut(s) 304
MboI GATC 1 cut(s) 395
MboII GAAGA 5 cut(s) 87, 87, 90, 378, 436
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 1 cut(s) 129
MnlI CCTC 4 cut(s) 12, 165, 184, 193
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 275
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 2 cut(s) 257, 331
MwoI GCNNNNNNNGC 8 cut(s) 125, 134, 191, 194, 305, 314, 381, 408
NdeII GATC 1 cut(s) 395
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 391
PctI GAATGC 2 cut(s) 257, 331
PkrI GCNGC 6 cut(s) 136, 154, 157, 187, 196, 331
PspN4I GGNNCC 1 cut(s) 204
PstI CTGCAG 2 cut(s) 190, 349
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 391
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 6 cut(s) 135, 153, 156, 186, 195, 330
Sau3AI GATC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 386
SetI ASST 8 cut(s) 160, 187, 199, 204, 262, 319, 371, 410
SfcI CTRYAG 3 cut(s) 138, 186, 345
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 304
TaaI ACNGT 4 cut(s) 115, 142, 218, 285
TaqI TCGA 1 cut(s) 337
TasI AATT 1 cut(s) 129
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 3 cut(s) 120, 129, 349
TseI GCWGC 6 cut(s) 134, 152, 155, 185, 194, 329
TspDTI ATGAA 2 cut(s) 224, 306
TspRI CASTG 3 cut(s) 120, 129, 349
Vha464I CTTAAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.