Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007829

Physical Location & Seq

Genomic Coordinates Reverse (-)

7665240 .. 7668161

Gene Structure 2922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G107600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATGGAGCTGGCTGTGCACAAACTATCGTTTTCTTCCCTTCCTCAGATCAATGTAAAGCTGCAAGAGCAAAGAAGAAGACCATCCCTGGTATCTGCTGCTCTACCTGAAACAGCGGCTTCAATAGCGATTGCTGCTGCAGTTGTTGGTACAGCAGCTACCATTCTTGTGAGGAGAACCAAAGCTTCTGAGGCAGCTGAGGTTCCTATGAAAATCTGTGAAGCCTGTGGTGGTTCTGGTATATGTCCTGAATGCAAAGGCGAAGGCTTCGTTCTTAAGAGACTCTCAGATGAAAGTGCTGAGAGGGCAAGATTGGCTTCTAAGAATATGGCCACTCGATACACAGCAGGGCTTCCAAAGAAATGGAGCTACTGTACAAAATGCTCCTCTGCCCGATCATGCCTTACCTGCAGTGGCCGTGGAAAGATAGTTTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.52

Weight (kDa)

9.59

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45050 AT3G45050 AT3G45050 AT3G45050
fragaria_vesca	FvH4_3g31190 FvH4_3g31190 FvH4_3g31190 FvH4_3g31190
malus_domestica	MD03G1125100.v1.1 MD11G1142300.v1.1
prunus_persica	Prupe.6G107600_v2.0.a1 Prupe.6G107600_v2.0.a1 Prupe.6G107600_v2.0.a1
pyrus_communis	pycom11g11790
rosa_chinensis	RchiOBHm_Chr5g0057841
rosa_laevigata	RLG00000035182
rosa_multiflora	Rmu_sc0010457.1_g000005
rosa_roxburghii	Rroxscaffold_1G00022660
rosa_rugosa	Rorug05G0310000
rosa_samantha	Rh5AG378200 Rh5BG389400 Rh5CG413700 Rh5DG404300
rosa_wichuraiana	Rw5G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AciI	CCGC	1 cut(s)	116
AcoI	YGGCCR	2 cut(s)	330, 415
AfaI	GTAC	2 cut(s)	151, 376
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	6 cut(s)	10, 61, 158, 185, 197, 369
AluI	AGCT	6 cut(s)	10, 61, 158, 185, 197, 369
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	274
Alw44I	GTGCAC	1 cut(s)	17
AoxI	GGCC	2 cut(s)	330, 415
ApaLI	GTGCAC	1 cut(s)	17
ApeKI	GCWGC	6 cut(s)	61, 98, 134, 137, 155, 194
BaeGI	GKGCMC	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	6 cut(s)	48, 85, 121, 124, 167, 206
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	274
BfmI	CTRYAG	2 cut(s)	138, 409
BfrI	CTTAAG	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	7 cut(s)	62, 99, 117, 135, 138, 156, 195
BlsI	GCNGC	7 cut(s)	63, 100, 118, 136, 139, 157, 196
Bme1390I	CCNGG	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	87, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	87, 418
BseGI	GGATG	1 cut(s)	83
BseMII	CTCAG	5 cut(s)	59, 180, 189, 291, 300
BseRI	GAGGAG	2 cut(s)	187, 376
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	6 cut(s)	48, 85, 121, 124, 167, 206
BshFI	GGCC	2 cut(s)	332, 417
BsiHKAI	GWGCWC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	332, 417
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	48, 395
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	332, 417
BspCNI	CTCAG	5 cut(s)	58, 181, 190, 292, 299
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	2 cut(s)	142, 413
BspMI	ACCTGC	1 cut(s)	416
BspTI	CTTAAG	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	87, 418
BssMI	GATC	2 cut(s)	48, 395
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	374
BstAFI	CTTAAG	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	6 cut(s)	45, 189, 198, 286, 300, 321
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	51, 398
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	48, 395
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 67, 125, 134, 191, 305, 314, 408
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	2 cut(s)	138, 409
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	6 cut(s)	48, 85, 121, 124, 167, 206
BstV2I	GAAGAC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	332, 417
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	150, 375
CviAII	CATG	1 cut(s)	399
CviQI	GTAC	2 cut(s)	150, 375
DdeI	CTNAG	6 cut(s)	45, 189, 198, 286, 300, 321
DpnI	GATC	2 cut(s)	50, 397
DpnII	GATC	2 cut(s)	48, 395
EaeI	YGGCCR	2 cut(s)	330, 415
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	402
FaiI	YATR	5 cut(s)	209, 242, 244, 329, 400
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FatI	CATG	1 cut(s)	398
Fnu4HI	GCNGC	7 cut(s)	62, 99, 117, 135, 138, 156, 195
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	7 cut(s)	62, 99, 117, 135, 138, 156, 195
GluI	GCNGC	7 cut(s)	62, 99, 117, 135, 138, 156, 195
HaeIII	GGCC	2 cut(s)	332, 417
Hin1II	CATG	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	1 cut(s)	282
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	48, 190, 289
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	50, 257
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	5 cut(s)	19, 64, 140, 255, 411
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 67, 125, 134, 191, 305, 314, 408
HpyF3I	CTNAG	6 cut(s)	45, 189, 198, 286, 300, 321
Hsp92II	CATG	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	48, 395
LmnI	GCTCC	3 cut(s)	7, 366, 389
LpnPI	CCDG	8 cut(s)	74, 101, 120, 222, 238, 261, 333, 421
Lsp1109I	GCAGC	6 cut(s)	48, 85, 121, 124, 167, 206
MalI	GATC	2 cut(s)	50, 397
MboI	GATC	2 cut(s)	48, 395
MboII	GAAGA	3 cut(s)	27, 87, 90
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	332
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	54, 165, 184, 193, 297, 397
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	116, 197
MspCI	CTTAAG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	8 cut(s)	16, 67, 125, 134, 191, 305, 314, 408
NdeII	GATC	2 cut(s)	48, 395
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	257
PkrI	GCNGC	7 cut(s)	63, 100, 118, 136, 139, 157, 196
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	204
PstI	CTGCAG	2 cut(s)	142, 413
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	151, 376
RsaNI	GTAC	2 cut(s)	150, 375
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	7 cut(s)	62, 99, 117, 135, 138, 156, 195
Sau3AI	GATC	2 cut(s)	48, 395
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	9 cut(s)	12, 63, 109, 160, 187, 199, 204, 371, 410
SfcI	CTRYAG	2 cut(s)	138, 409
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	337
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	6 cut(s)	61, 98, 134, 137, 155, 194
TspDTI	ATGAA	2 cut(s)	224, 306
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.