FvH4_3g31190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007829
Physical Location & Seq
Forward (+)
24998654 .. 25006352
7699 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31190.t2

Sequence Viewer

Length: 441 bp
ATGATGGAGTTGGCTGTGAGGAAACTACCAGTTCTCTCCTTCACCAGGATTGATATAAAGCCACACAAACAAAGAAGAAGAGTATCTTTTGTATCGTCTGCTCTACCTGAGACAGTGGCTTCAGTGGCAATTGCTGCTACAGTTGTTGGGGCAGCAGCTACCATTCTTGTGAGAAGAAACAAAGCTGCGGAGGCAGCTGAGGTGCCTATGAAAGATTGTGAATCCTGTGGTGGCTCTGGTATATGTCCTGAATGCAAAGGTGAAGGCTTTGTACTTAAGAGACTGTCAGACGAAAGTGCTGAGCGAGCTAGATTAGCTTCTAAAAATGCAGCTACTCGATACACAGCAGGGCTTCCAAAGAAATGGAGCTACTGTTCAAAGTGTTCTTCCGCCCGATCATGCAGTAGCTGCGGTGGCCGTGGAAAGATAGTTTTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.54

Weight (kDa)

9.76

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7895 PF25433 2 - 74 5e-40 Domain of unknown function (DUF7895)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AciI CCGC 3 cut(s) 188, 390, 411
AcoI YGGCCR 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 45
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 378
AjnI CCWGG 1 cut(s) 44
AloI GAACNNNNNNTCC 2 cut(s) 358, 390
AluBI AGCT 8 cut(s) 158, 185, 197, 308, 317, 332, 369, 408
AluI AGCT 8 cut(s) 158, 185, 197, 308, 317, 332, 369, 408
Alw26I GTCTC 2 cut(s) 104, 274
AlwNI CAGNNNCTG 1 cut(s) 408
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 7 cut(s) 134, 152, 155, 185, 194, 329, 408
AsuHPI GGTGA 2 cut(s) 34, 272
BanI GGYRCC 1 cut(s) 202
BarI GAAGNNNNNNTAC 2 cut(s) 255, 287
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 7 cut(s) 121, 164, 167, 172, 206, 341, 395
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 104, 274
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 7 cut(s) 135, 153, 156, 186, 195, 330, 409
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 7 cut(s) 136, 154, 157, 187, 196, 331, 410
Bme1390I CCNGG 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 418
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMII CTCAG 3 cut(s) 99, 189, 291
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 7 cut(s) 121, 164, 167, 172, 206, 341, 395
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 104, 274
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 417
Bsp143I GATC 1 cut(s) 395
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 3 cut(s) 188, 390, 411
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 3 cut(s) 100, 190, 292
BspLI GGNNCC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 202
BspTI CTTAAG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 4 cut(s) 115, 142, 285, 374
Bst6I CTCTTC 1 cut(s) 73
BstAFI CTTAAG 1 cut(s) 275
BstAPI GCANNNNNTGC 2 cut(s) 134, 408
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 108, 198, 300
BstDSI CCRYGG 1 cut(s) 418
BstENI CCTNNNNNAGG 1 cut(s) 43
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 2 cut(s) 104, 274
BstMBI GATC 1 cut(s) 395
BstMWI GCNNNNNNNGC 8 cut(s) 125, 134, 191, 194, 305, 314, 408, 414
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 7 cut(s) 121, 164, 167, 172, 206, 341, 395
BstXI CCANNNNNNTGG 1 cut(s) 363
BsuRI GGCC 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 418
BtsIMutI CAGTG 2 cut(s) 120, 129
Cac8I GCNNGC 1 cut(s) 306
CaiI CAGNNNCTG 1 cut(s) 408
Csp6I GTAC 1 cut(s) 272
CviAII CATG 1 cut(s) 399
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 3 cut(s) 108, 198, 300
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EciI GGCGGA 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 402
FaiI YATR 5 cut(s) 56, 209, 242, 244, 400
FalI AAGNNNNNCTT 2 cut(s) 70, 102
FatI CATG 1 cut(s) 398
Fnu4HI GCNGC 7 cut(s) 135, 153, 156, 186, 195, 330, 409
Fsp4HI GCNGC 7 cut(s) 135, 153, 156, 186, 195, 330, 409
FspBI CTAG 1 cut(s) 309
GluI GCNGC 7 cut(s) 135, 153, 156, 186, 195, 330, 409
HaeIII GGCC 1 cut(s) 417
Hin1II CATG 1 cut(s) 402
HinfI GANTC 1 cut(s) 221
HphI GGTGA 2 cut(s) 34, 272
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 49, 257
HpyCH4III ACNGT 4 cut(s) 115, 142, 285, 374
HpyCH4V TGCA 3 cut(s) 255, 329, 402
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 134, 191, 194, 305, 314, 408, 414
HpyF3I CTNAG 3 cut(s) 108, 198, 300
Hsp92II CATG 1 cut(s) 402
Kzo9I GATC 1 cut(s) 395
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 8 cut(s) 31, 42, 58, 120, 222, 238, 261, 333
Lsp1109I GCAGC 7 cut(s) 121, 164, 167, 172, 206, 341, 395
MaeI CTAG 1 cut(s) 309
MalI GATC 1 cut(s) 397
MboI GATC 1 cut(s) 395
MboII GAAGA 4 cut(s) 87, 90, 186, 378
MfeI CAATTG 1 cut(s) 129
MluCI AATT 1 cut(s) 129
MnlI CCTC 3 cut(s) 12, 184, 193
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 46
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 8 cut(s) 125, 134, 191, 194, 305, 314, 408, 414
NdeII GATC 1 cut(s) 395
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 204
PctI GAATGC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 7 cut(s) 136, 154, 157, 187, 196, 331, 410
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 7 cut(s) 135, 153, 156, 186, 195, 330, 409
Sau3AI GATC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 129
SsiI CCGC 3 cut(s) 188, 390, 411
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 4 cut(s) 115, 142, 285, 374
TaqI TCGA 1 cut(s) 337
TasI AATT 1 cut(s) 129
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 2 cut(s) 120, 129
TseI GCWGC 7 cut(s) 134, 152, 155, 185, 194, 329, 408
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 2 cut(s) 120, 129
Vha464I CTTAAG 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 43
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.