AT3G45770

Zinc-binding dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011303
Physical Location & Seq
Reverse (-)
16805473 .. 16807950
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45770.1

Sequence Viewer

Length: 1128 bp
ATGGCGGCGTTGATGGAGTCAGTCGTCGGCCGAGCTCTAAAATTCTCATCGACGGCGAATTTCAGGTCAATCCGACGCGGCGAAACACCAACACTCTGTATCAAATCATTCTCCACCATTATGTCACCACCGTCAAAAGCCATCGTCTACGAAGAACACGGCTCTCCCGATTCCGTCACCAGATTGGTGAATCTCCCGCCGGTGGAAGTGAAAGAAAACGACGTTTGTGTTAAAATGATCGCCGCTCCGATCAACCCCTCCGATATCAATCGAATTGAAGGTGTGTATCCGGTGAGGCCACCGGTACCAGCGGTTGGTGGTTATGAAGGTGTTGGTGAAGTTTATGCAGTTGGCTCCAATGTTAATGGTTTTTCTCCTGGTGATTGGGTCATTCCATCTCCACCTTCTTCAGGGACTTGGCAGACTTATGTTGTGAAGGAAGAGAGTGTGTGGCACAAAATCGATAAAGAGTGTCCAATGGAGTATGCAGCGACGATTACTGTTAATCCATTGACGGCTTTGAGGATGCTTGAGGACTTTGTGAACTTGAATTCTGGGGATTCTGTTGTACAGAATGGTGCAACAAGTATTGTGGGTCAGTGTGTCATTCAGTTGGCAAGACTCCGTGGCATCAGTACCATCAACCTTATTCGTGACAGGGCTGGGTCGGATGAAGCAAGAGAGCAGCTGAAAGCTCTAGGTGCAGATGAAGTCTTTTCAGAGAGTCAACTGAATGTAAAGAATGTGAAAAGTCTTTTGGGTAACTTACCTGAACCAGCTCTGGGATTCAACTGTGTTGGTGGCAATGCTGCCTCTCTTGTCCTCAAATATCTCAGGGAAGGAGGAACCATGGTAACATATGGTGGGATGTCTAAGAAGCCAATCACTGTGTCAACAACATCTTTCATCTTTAAGGATTTGGCCTTAAGAGGATTTTGGCTGCAGAGTTGGTTGAGTATGGGTAAAGTAAAAGAATGCAGAGAGATGATAGACTATCTCCTCGGGCTTGCACGAGACGGGAAGCTAAAATACGAAACGGAATTGGTTCCCTTCGAAGAGTTCCCTGTTGCTCTCGATAAAGCTCTCGGGAAGCTAGGAAGGCAACCTAAACAAGTCATCACATTCTGA

Protein Analysis

375

Amino Acids

40.82

Weight (kDa)

6.77

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 72 - 148 1.6e-12 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 198 - 330 1.6e-16 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45770 AT3G45770
fragaria_vesca FvH4_3g34120
malus_domestica MD03G1107400.v1.1
prunus_persica Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1
pyrus_communis pycom03g08690
rosa_chinensis RchiOBHm_Chr5g0061771
rosa_laevigata RLG00000035504
rosa_multiflora Rmu_sc0003709.1_g000010
rosa_roxburghii Rroxscaffold_1G00018960
rosa_rugosa Rorug05G0343400 Rorug05G0343500 Rorug05G0343600
rosa_samantha Rh5AG404500 Rh5BG417600 Rh5CG442000 Rh5DG431700
rosa_wichuraiana Rw5G038000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 78
AciI CCGC 5 cut(s) 5, 78, 197, 243, 311
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 3 cut(s) 41, 58, 550
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 3 cut(s) 306, 570, 637
AfiI CCNNNNNNNGG 4 cut(s) 202, 314, 410, 782
AflII CTTAAG 1 cut(s) 925
AgeI ACCGGT 1 cut(s) 301
AgsI TTSAA 3 cut(s) 278, 550, 790
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 7 cut(s) 35, 688, 695, 779, 1024, 1082, 1093
AluI AGCT 7 cut(s) 35, 688, 695, 779, 1024, 1082, 1093
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 1008
Ama87I CYCGRG 2 cut(s) 1001, 1085
AoxI GGCC 3 cut(s) 28, 296, 921
ApeKI GCWGC 4 cut(s) 488, 685, 809, 940
ApoI RAATTY 3 cut(s) 41, 58, 550
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AsiGI ACCGGT 1 cut(s) 301
Asp700I GAANNNNTTC 1 cut(s) 1044
Asp718I GGTACC 1 cut(s) 304
AsuHPI GGTGA 6 cut(s) 117, 169, 199, 304, 347, 392
AsuII TTCGAA 1 cut(s) 1053
AvaI CYCGRG 2 cut(s) 1001, 1085
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 1013, 1045
BauI CACGAG 1 cut(s) 1011
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 4 cut(s) 500, 697, 796, 927
BccI CCATC 4 cut(s) 7, 149, 403, 647
BceAI ACGGC 3 cut(s) 69, 175, 531
BciT130I CCWGG 1 cut(s) 378
BciVI GTATCC 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 1008
BfaI CTAG 2 cut(s) 698, 1094
BfmI CTRYAG 1 cut(s) 941
BfrI CTTAAG 1 cut(s) 925
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 7 cut(s) 6, 79, 243, 489, 686, 810, 941
BlsI GCNGC 7 cut(s) 7, 80, 244, 490, 687, 811, 942
Bme1390I CCNGG 1 cut(s) 378
BmeT110I CYCGRG 2 cut(s) 1001, 1085
BmiI GGNNCC 4 cut(s) 306, 355, 847, 1047
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 516, 639
Bpu14I TTCGAA 1 cut(s) 1053
BpuEI CTTGAG 1 cut(s) 551
Bsa29I ATCGAT 1 cut(s) 462
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 625, 849, 1000
BsaWI WCCGGW 2 cut(s) 289, 301
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 314, 410, 782
Bse118I RCCGGY 2 cut(s) 199, 301
Bse3DI GCAATG 1 cut(s) 811
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 378
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 3 cut(s) 625, 849, 1000
BseGI GGATG 3 cut(s) 531, 676, 873
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 4 cut(s) 202, 314, 410, 782
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 1 cut(s) 847
BseRI GAGGAG 1 cut(s) 989
BseX3I CGGCCG 1 cut(s) 28
BseXI GCAGC 4 cut(s) 500, 697, 796, 927
BseYI CCCAGC 1 cut(s) 662
BsgI GTGCAG 1 cut(s) 723
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 3 cut(s) 30, 298, 923
BshNI GGYRCC 1 cut(s) 304
BshTI ACCGGT 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 462
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 37
BsiHKCI CYCGRG 2 cut(s) 1001, 1085
BsiSI CCGG 3 cut(s) 200, 290, 302
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 4 cut(s) 202, 314, 410, 782
BsmAI GTCTC 1 cut(s) 1008
BsmBI CGTCTC 1 cut(s) 1008
BsmFI GGGAC 1 cut(s) 427
BsmI GAATGC 1 cut(s) 980
BsnI GGCC 3 cut(s) 30, 298, 923
BsoBI CYCGRG 2 cut(s) 1001, 1085
Bsp119I TTCGAA 1 cut(s) 1053
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 2 cut(s) 237, 249
Bsp19I CCATGG 1 cut(s) 849
BspACI CCGC 5 cut(s) 5, 78, 197, 243, 311
BspANI GGCC 3 cut(s) 30, 298, 923
BspCNI CTCAG 1 cut(s) 846
BspDI ATCGAT 1 cut(s) 462
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 4 cut(s) 306, 355, 847, 1047
BspMAI CTGCAG 1 cut(s) 945
BspT104I TTCGAA 1 cut(s) 1053
BspT107I GGYRCC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 925
BsrBI CCGCTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 811
BsrFI RCCGGY 2 cut(s) 199, 301
BsrGI TGTACA 1 cut(s) 568
BssAI RCCGGY 2 cut(s) 199, 301
BssECI CCNNGG 3 cut(s) 625, 849, 1000
BssMI GATC 2 cut(s) 237, 249
BssSI CACGAG 1 cut(s) 1011
BssT1I CCWWGG 1 cut(s) 849
Bst2BI CACGAG 1 cut(s) 1011
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 4 cut(s) 132, 502, 794, 889
Bst6I CTCTTC 2 cut(s) 435, 1050
BstAFI CTTAAG 1 cut(s) 925
BstAUI TGTACA 1 cut(s) 568
BstBI TTCGAA 1 cut(s) 1053
BstC8I GCNNGC 1 cut(s) 1008
BstDEI CTNAG 2 cut(s) 833, 873
BstDSI CCRYGG 2 cut(s) 625, 849
BstENI CCTNNNNNAGG 1 cut(s) 408
BstF5I GGATG 3 cut(s) 531, 676, 873
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 2 cut(s) 240, 252
BstMAI GTCTC 1 cut(s) 1008
BstMBI GATC 2 cut(s) 237, 249
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 701, 1099
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 941
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 4 cut(s) 500, 697, 796, 927
BstZI CGGCCG 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 462
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 30, 298, 923
BsuTUI ATCGAT 1 cut(s) 462
BtgI CCRYGG 2 cut(s) 625, 849
BtsCI GGATG 3 cut(s) 531, 676, 873
BtsIMutI CAGTG 2 cut(s) 605, 885
Cac8I GCNNGC 1 cut(s) 1008
Cfr10I RCCGGY 2 cut(s) 199, 301
ClaI ATCGAT 1 cut(s) 462
CseI GACGC 1 cut(s) 84
Csp6I GTAC 3 cut(s) 305, 569, 636
CspAI ACCGGT 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviAII CATG 1 cut(s) 850
CviQI GTAC 3 cut(s) 305, 569, 636
DdeI CTNAG 2 cut(s) 833, 873
DpnI GATC 2 cut(s) 239, 251
DpnII GATC 2 cut(s) 237, 249
EaeI YGGCCR 1 cut(s) 28
EagI CGGCCG 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 435, 1050
EarI CTCTTC 2 cut(s) 435, 1050
Ecl136II GAGCTC 1 cut(s) 35
EclXI CGGCCG 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 849
Eco24I GRGCYC 1 cut(s) 37
Eco32I GATATC 1 cut(s) 265
Eco52I CGGCCG 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 393
Eco88I CYCGRG 2 cut(s) 1001, 1085
EcoICRI GAGCTC 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 376
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 849
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 849
Esp3I CGTCTC 1 cut(s) 1008
FaeI CATG 1 cut(s) 853
FaiI YATR 9 cut(s) 122, 324, 345, 429, 486, 851, 859, 861, 959
FaqI GGGAC 1 cut(s) 427
FatI CATG 1 cut(s) 849
FauI CCCGC 1 cut(s) 204
FauNDI CATATG 1 cut(s) 859
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 7 cut(s) 6, 79, 243, 489, 686, 810, 941
FokI GGATG 3 cut(s) 538, 683, 880
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 7 cut(s) 6, 79, 243, 489, 686, 810, 941
FspBI CTAG 2 cut(s) 698, 1094
GluI GCNGC 7 cut(s) 6, 79, 243, 489, 686, 810, 941
GsaI CCCAGC 1 cut(s) 666
HaeIII GGCC 3 cut(s) 30, 298, 923
HapII CCGG 3 cut(s) 200, 290, 302
HgaI GACGC 1 cut(s) 84
Hin1II CATG 1 cut(s) 853
HincII GTYRAC 2 cut(s) 728, 894
HindII GTYRAC 2 cut(s) 728, 894
HinfI GANTC 7 cut(s) 17, 170, 190, 560, 621, 724, 786
HpaII CCGG 3 cut(s) 200, 290, 302
HphI GGTGA 6 cut(s) 117, 169, 199, 304, 347, 392
Hpy166II GTNNAC 4 cut(s) 148, 544, 728, 894
Hpy188I TCNGA 6 cut(s) 74, 249, 262, 670, 721, 1127
Hpy188III TCNNGA 4 cut(s) 167, 653, 1073, 1087
Hpy8I GTNNAC 4 cut(s) 148, 544, 728, 894
Hpy99I CGWCG 5 cut(s) 29, 55, 78, 224, 496
HpyAV CCTTC 7 cut(s) 272, 320, 414, 430, 833, 1060, 1092
HpyCH4III ACNGT 4 cut(s) 132, 502, 794, 889
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 7 cut(s) 347, 488, 581, 704, 943, 978, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 701, 1099
HpyF3I CTNAG 2 cut(s) 833, 873
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 853
KpnI GGTACC 1 cut(s) 308
Kzo9I GATC 2 cut(s) 237, 249
LmnI GCTCC 2 cut(s) 250, 359
Lsp1109I GCAGC 4 cut(s) 500, 697, 796, 927
LweI GCATC 2 cut(s) 516, 639
MaeI CTAG 2 cut(s) 698, 1094
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 5 cut(s) 123, 175, 653, 761, 853
MalI GATC 2 cut(s) 239, 251
MbiI CCGCTC 1 cut(s) 245
MboI GATC 2 cut(s) 237, 249
MboII GAAGA 4 cut(s) 164, 399, 452, 1067
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 5 cut(s) 41, 58, 273, 550, 1040
MlyI GAGTC 3 cut(s) 26, 615, 733
MmeI TCCRAC 2 cut(s) 97, 648
MnlI CCTC 9 cut(s) 268, 288, 516, 526, 823, 833, 836, 923, 1010
MroXI GAANNNNTTC 1 cut(s) 1044
MseI TTAA 5 cut(s) 231, 363, 504, 912, 926
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 2 cut(s) 311, 688
MspCI CTTAAG 1 cut(s) 925
MspI CCGG 3 cut(s) 200, 290, 302
MspR9I CCNGG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 980
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 701, 1099
NcoI CCATGG 1 cut(s) 849
NdeI CATATG 1 cut(s) 859
NdeII GATC 2 cut(s) 237, 249
NlaIII CATG 1 cut(s) 853
NlaIV GGNNCC 4 cut(s) 306, 355, 847, 1047
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 3 cut(s) 123, 175, 653
NspV TTCGAA 1 cut(s) 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 980
PdmI GAANNNNTTC 1 cut(s) 1044
PfeI GAWTC 4 cut(s) 170, 190, 560, 786
PflMI CCANNNNNTGG 1 cut(s) 314
PinAI ACCGGT 1 cut(s) 301
PkrI GCNGC 7 cut(s) 7, 80, 244, 490, 687, 811, 942
PleI GAGTC 3 cut(s) 25, 615, 732
PpsI GAGTC 3 cut(s) 25, 615, 732
Psp124BI GAGCTC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 4 cut(s) 306, 355, 847, 1047
PstI CTGCAG 1 cut(s) 945
PvuII CAGCTG 1 cut(s) 688
RsaI GTAC 3 cut(s) 306, 570, 637
RsaNI GTAC 3 cut(s) 305, 569, 636
RseI CAYNNNNRTG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 37
SaqAI TTAA 5 cut(s) 231, 363, 504, 912, 926
SatI GCNGC 7 cut(s) 6, 79, 243, 489, 686, 810, 941
Sau3AI GATC 2 cut(s) 237, 249
SchI GAGTC 3 cut(s) 26, 615, 733
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 2 cut(s) 516, 639
SfcI CTRYAG 1 cut(s) 941
SfuI TTCGAA 1 cut(s) 1053
SgrAI CRCCGGYG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 530, 925
SmoI CTYRAG 2 cut(s) 530, 925
Sse9I AATT 5 cut(s) 41, 58, 273, 550, 1040
SsiI CCGC 5 cut(s) 5, 78, 197, 243, 311
SspMI CTAG 2 cut(s) 698, 1094
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 4 cut(s) 132, 502, 794, 889
TaiI ACGT 1 cut(s) 225
TaqI TCGA 5 cut(s) 50, 271, 462, 1053, 1074
TasI AATT 5 cut(s) 41, 58, 273, 550, 1040
TatI WGTACW 1 cut(s) 568
TauI GCSGC 3 cut(s) 8, 81, 245
TfiI GAWTC 4 cut(s) 170, 190, 560, 786
Tru1I TTAA 5 cut(s) 231, 363, 504, 912, 926
Tru9I TTAA 5 cut(s) 231, 363, 504, 912, 926
TscAI CASTG 2 cut(s) 605, 892
TseFI GTSAC 3 cut(s) 123, 175, 653
TseI GCWGC 4 cut(s) 488, 685, 809, 940
Tsp45I GTSAC 3 cut(s) 123, 175, 653
TspDTI ATGAA 4 cut(s) 339, 687, 723, 895
TspGWI ACGGA 3 cut(s) 163, 614, 1052
TspRI CASTG 2 cut(s) 605, 892
Van91I CCANNNNNTGG 1 cut(s) 314
Vha464I CTTAAG 1 cut(s) 925
XagI CCTNNNNNAGG 1 cut(s) 408
XapI RAATTY 3 cut(s) 41, 58, 550
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 1044
XspI CTAG 2 cut(s) 698, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.