Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011303

Physical Location & Seq

Genomic Coordinates Reverse (-)

42157563 .. 42158144

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0343500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGACTTGGTTAGAAGAGTTTAAGAGTGCTAGGCAGATCGATTCAAAGTCAAAGCAAGCCCCGCAGAAACAAACATGGAGCCTTGTGCCTCAAGGTATGTGGAAACTCAATGTGGATGGAAGTTTCTTACCTAATAGGACGATTGGACGATTGGGAGGAGTCCTCCGAGATGACGCTAGGCGTTTCAAGGCAGCTTTTGCGCTGCAAGTCCCGCATGCAGCAACAGCCAAGCAAGTTGAACTCTTGGCGCTAAGAGAGGGTATGAAGCTACTGCAGCATCTACAGATACAAAATGTAGTCTTGGAAACATACTGTTTAGAGGCTACAAAGGATATCCGTGAGTCAAACCATACTTTCATGGCTGAAGGAGGACTGATCGACGACATCAAAGTATGTTTAAGTAGTAGCCAACTGTATCAATTTCTTATGCTCCTAGATCCTGCAATAAAGTGGCTCATAGACTGGCCAATGTGGCTTATGAAGACCGGCCTGAATCAGTCTGGTATGACAGGGCTCCAGAATGCATTCTGGATGTCCTTGCTCTTGATTGTAATATGCCCAGTTAAGGGCACTTTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009536 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 map00062 map01100 map01212

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

193

Amino Acids

21.89

Weight (kDa)

9.03

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	37 - 136	1.1e-11	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45770 AT3G45770
fragaria_vesca	FvH4_3g34120
malus_domestica	MD03G1107400.v1.1
prunus_persica	Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1
pyrus_communis	pycom03g08690
rosa_chinensis	RchiOBHm_Chr5g0061771
rosa_laevigata	RLG00000035504
rosa_multiflora	Rmu_sc0003709.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018960
rosa_rugosa	Rorug05G0343400 Rorug05G0343500 Rorug05G0343600
rosa_samantha	Rh5AG404500 Rh5BG417600 Rh5CG442000 Rh5DG431700
rosa_wichuraiana	Rw5G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 212
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	565, 566
AgsI	TTSAA	3 cut(s)	45, 187, 239
AluBI	AGCT	2 cut(s)	194, 268
AluI	AGCT	2 cut(s)	194, 268
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	464, 487
ApeKI	GCWGC	4 cut(s)	191, 202, 218, 274
Asp700I	GAANNNNTTC	1 cut(s)	524
AspLEI	GCGC	2 cut(s)	202, 250
BaeGI	GKGCMC	1 cut(s)	572
BalI	TGGCCA	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	488
BbvI	GCAGC	4 cut(s)	189, 203, 230, 286
BccI	CCATC	1 cut(s)	110
BfaI	CTAG	3 cut(s)	30, 177, 434
BfmI	CTRYAG	2 cut(s)	272, 281
BfoI	RGCGCY	1 cut(s)	251
BglI	GCCNNNNNGGC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	192, 203, 219, 275
BlsI	GCNGC	4 cut(s)	193, 204, 220, 276
BmiI	GGNNCC	2 cut(s)	80, 515
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 566
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	467, 560
BseCI	ATCGAT	1 cut(s)	39
BseGI	GGATG	2 cut(s)	121, 537
BseLI	CCNNNNNNNGG	2 cut(s)	565, 566
BseNI	ACTGG	2 cut(s)	467, 560
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	4 cut(s)	189, 203, 230, 286
BshFI	GGCC	2 cut(s)	466, 489
BshVI	ATCGAT	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	565, 566
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	2 cut(s)	524, 526
BsnI	GGCC	2 cut(s)	466, 489
Bsp1286I	GDGCHC	2 cut(s)	516, 572
Bsp143I	GATC	3 cut(s)	36, 375, 436
BspACI	CCGC	2 cut(s)	62, 212
BspANI	GGCC	2 cut(s)	466, 489
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	80, 515
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	2 cut(s)	467, 560
BssAI	RCCGGY	1 cut(s)	485
BssMI	GATC	3 cut(s)	36, 375, 436
Bst4CI	ACNGT	2 cut(s)	314, 414
Bst6I	CTCTTC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	57, 216
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	121, 537
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	202, 250
BstKTI	GATC	3 cut(s)	39, 378, 439
BstMBI	GATC	3 cut(s)	36, 375, 436
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 197, 211, 224, 274, 472
BstNSI	RCATGY	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	272, 281
BstSLI	GKGCMC	1 cut(s)	572
BstV1I	GCAGC	4 cut(s)	189, 203, 230, 286
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	466, 489
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	121, 537
Cac8I	GCNNGC	2 cut(s)	57, 216
CfoI	GCGC	2 cut(s)	202, 250
Cfr10I	RCCGGY	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	39
CseI	GACGC	1 cut(s)	182
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	3 cut(s)	75, 215, 358
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	38, 377, 438
DpnII	GATC	3 cut(s)	36, 375, 436
EaeI	YGGCCR	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	516
Eco32I	GATATC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	516
FaeI	CATG	3 cut(s)	78, 218, 361
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	3 cut(s)	74, 214, 357
FauI	CCCGC	2 cut(s)	69, 219
Fnu4HI	GCNGC	4 cut(s)	192, 203, 219, 275
FokI	GGATG	2 cut(s)	128, 544
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	4 cut(s)	192, 203, 219, 275
FspBI	CTAG	3 cut(s)	30, 177, 434
GlaI	GCGC	2 cut(s)	201, 249
GluI	GCNGC	4 cut(s)	192, 203, 219, 275
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	466, 489
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	202, 250
Hin1II	CATG	3 cut(s)	78, 218, 361
Hin6I	GCGC	2 cut(s)	200, 248
HinP1I	GCGC	2 cut(s)	200, 248
HinfI	GANTC	4 cut(s)	41, 159, 341, 493
HpaII	CCGG	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	3 cut(s)	517, 529, 544
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	314, 414
HpyCH4V	TGCA	5 cut(s)	205, 218, 274, 443, 524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 197, 211, 224, 274, 472
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	3 cut(s)	78, 218, 361
HspAI	GCGC	2 cut(s)	200, 248
Kzo9I	GATC	3 cut(s)	36, 375, 436
LmnI	GCTCC	3 cut(s)	78, 435, 519
LpnPI	CCDG	9 cut(s)	448, 453, 486, 495, 499, 503, 514, 530, 573
Lsp1109I	GCAGC	4 cut(s)	189, 203, 230, 286
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	3 cut(s)	30, 177, 434
MalI	GATC	3 cut(s)	38, 377, 438
MboI	GATC	3 cut(s)	36, 375, 436
MboII	GAAGA	2 cut(s)	26, 493
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	2 cut(s)	516, 572
MlsI	TGGCCA	1 cut(s)	466
MluCI	AATT	1 cut(s)	419
MluNI	TGGCCA	1 cut(s)	466
MlyI	GAGTC	2 cut(s)	168, 350
MnlI	CCTC	6 cut(s)	99, 149, 173, 250, 313, 362
Mox20I	TGGCCA	1 cut(s)	466
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	466
MseI	TTAA	3 cut(s)	21, 398, 564
Msp20I	TGGCCA	1 cut(s)	466
MspI	CCGG	1 cut(s)	486
Mva1269I	GAATGC	2 cut(s)	524, 526
MwoI	GCNNNNNNNGC	6 cut(s)	61, 197, 211, 224, 274, 472
NdeII	GATC	3 cut(s)	36, 375, 436
NlaIII	CATG	3 cut(s)	78, 218, 361
NlaIV	GGNNCC	2 cut(s)	80, 515
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PctI	GAATGC	2 cut(s)	524, 526
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	41, 493
PkrI	GCNGC	4 cut(s)	193, 204, 220, 276
PleI	GAGTC	2 cut(s)	167, 349
PpsI	GAGTC	2 cut(s)	167, 349
PspN4I	GGNNCC	2 cut(s)	80, 515
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	21, 398, 564
SatI	GCNGC	4 cut(s)	192, 203, 219, 275
Sau3AI	GATC	3 cut(s)	36, 375, 436
SchI	GAGTC	2 cut(s)	168, 350
SduI	GDGCHC	2 cut(s)	516, 572
SetI	ASST	4 cut(s)	97, 133, 196, 270
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	2 cut(s)	272, 281
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	2 cut(s)	62, 212
SspMI	CTAG	3 cut(s)	30, 177, 434
TaaI	ACNGT	2 cut(s)	314, 414
TaqI	TCGA	2 cut(s)	39, 378
TasI	AATT	1 cut(s)	419
TfiI	GAWTC	2 cut(s)	41, 493
Tru1I	TTAA	3 cut(s)	21, 398, 564
Tru9I	TTAA	3 cut(s)	21, 398, 564
TseI	GCWGC	4 cut(s)	191, 202, 218, 274
TspDTI	ATGAA	3 cut(s)	278, 346, 494
TspGWI	ACGGA	1 cut(s)	326
XceI	RCATGY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	3 cut(s)	30, 177, 434
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.