Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011303

Physical Location & Seq

Genomic Coordinates Reverse (-)

70146348 .. 70150039

Gene Structure 3692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG404500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTCGTCGGTTCGATCACCGGCTCTCAGAGCTCTGAAACCACTCTTCAATTTCACACTCCACGACACCTTTAACCCTAGACCCCGAACCCTAAGCCTTCGGGCCTTCTCCACCGCCTTGTCTCCGCCGTCTAAGGCGGTGGTCTACGAGCAACACGGCCCTCCCGATAGCGTTACCAGAGTGATAAATTTACCGCCGGTTGAAGTGAAAGAGAACGATGTCTGTGTCAGAATGCTGGCTTCTCCTATAAACCCTTCTGATATTAACAGGATTGAAGGGGTATACCCTGTGAGGCCACAAGTGCCAGCGGTTGGAGGATATGAAGGTGTGGGAGAGGTACACTCTGTCGGCTCTGCGGTTAAAGGACTATCGCCTGGAGATTTGGTCATCCCATCTCCACCTTCTTCCGGGATGTGGCAAACTTATGTTGTGAAAGATCAGAGTGTATGGTACAAGATTAATAAAGATTCACCCTTGGAATATGCTGCTACCATTACTGTAAATCCATTGACTGCTCTAAGAATGCTTGAAGACTTCACCACTTTAAAGTCAGGAGATGCTGTTGTTCAAAATGGAGCCACCAGCATCGTGGGGCAGTGCATTATTCAGCTTGCAAAGAATCGTGGCATTCACAGCGTTAATATTATAAGAGACAGGGCTGGGTCAGATGAAGTAAAGGAAAAGCTTAAAAAACTTGGTGCTGATGAAGTTTTTACTGAGAGCGAACTGCAAGTCAAGGATGTCAAGGGTCTTCTGGCTGGCATACCCGAACCTGCATTGGGATTTAACTGCGTTGGCGGCAATGCTGCTTCTTTGGTTCTTAGATTTTTGGGGCGTGGCGGCACTATGGTGACTTATGGTGGCATGTCTAAGAAACCAATTACTGTATCAACTTCATATTTCATTTTTAAGGTGATTCATGCTTTTTTCCCTCTTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009536 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 map00062 map01100 map01212

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

315

Amino Acids

33.93

Weight (kDa)

9.15

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	72 - 132	5.8e-12	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	198 - 307	5.8e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45770 AT3G45770
fragaria_vesca	FvH4_3g34120
malus_domestica	MD03G1107400.v1.1
prunus_persica	Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1
pyrus_communis	pycom03g08690
rosa_chinensis	RchiOBHm_Chr5g0061771
rosa_laevigata	RLG00000035504
rosa_multiflora	Rmu_sc0003709.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018960
rosa_rugosa	Rorug05G0343400 Rorug05G0343500 Rorug05G0343600
rosa_samantha	Rh5AG404500 Rh5BG417600 Rh5CG442000 Rh5DG431700
rosa_wichuraiana	Rw5G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	784
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	2 cut(s)	147, 285
AciI	CCGC	8 cut(s)	117, 128, 140, 197, 311, 359, 801, 843
AcsI	RAATTY	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	342, 455
AfiI	CCNNNNNNNGG	4 cut(s)	314, 410, 417, 782
AgsI	TTSAA	5 cut(s)	52, 206, 278, 533, 572
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	851
AluBI	AGCT	3 cut(s)	35, 613, 688
AluI	AGCT	3 cut(s)	35, 613, 688
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	129, 648
AoxI	GGCC	3 cut(s)	105, 160, 296
ApeKI	GCWGC	2 cut(s)	488, 809
ApoI	RAATTY	1 cut(s)	190
ArsI	GACNNNNNNTTYG	2 cut(s)	720, 752
AseI	ATTAAT	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	105, 161
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	5 cut(s)	12, 465, 532, 865, 928
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	540, 746
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	475, 796
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	2 cut(s)	115, 175
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	129, 648
BfaI	CTAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	784
BisI	GCNGC	4 cut(s)	489, 802, 810, 844
BlsI	GCNGC	4 cut(s)	490, 803, 811, 845
Bme1390I	CCNGG	2 cut(s)	378, 412
BmgT120I	GGNCC	2 cut(s)	105, 161
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	2 cut(s)	378, 412
BmsI	GCATC	2 cut(s)	550, 597
BpiI	GAAGAC	2 cut(s)	540, 746
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	477
BsaXI	ACNNNNNCTCC	4 cut(s)	372, 402, 549, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 410, 417, 782
Bse118I	RCCGGY	2 cut(s)	22, 199
Bse3DI	GCAATG	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	3 cut(s)	390, 420, 748
BseLI	CCNNNNNNNGG	4 cut(s)	314, 410, 417, 782
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	2 cut(s)	43, 711
BseXI	GCAGC	2 cut(s)	475, 796
BseYI	CCCAGC	1 cut(s)	662
BshFI	GGCC	3 cut(s)	107, 162, 298
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	23, 200, 411
BslI	CCNNNNNNNGG	4 cut(s)	314, 410, 417, 782
BsmAI	GTCTC	2 cut(s)	129, 648
BsmI	GAATGC	3 cut(s)	240, 531, 630
BsnI	GGCC	3 cut(s)	107, 162, 298
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	17, 439
BspACI	CCGC	8 cut(s)	117, 128, 140, 197, 311, 359, 801, 843
BspANI	GGCC	3 cut(s)	107, 162, 298
BspCNI	CTCAG	2 cut(s)	42, 712
BspLI	GGNNCC	1 cut(s)	580
BspMI	ACCTGC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	811
BsrFI	RCCGGY	2 cut(s)	22, 199
BssAI	RCCGGY	2 cut(s)	22, 199
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	2 cut(s)	17, 439
BssNAI	GTATAC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	502, 889
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	4 cut(s)	240, 309, 615, 763
BstDEI	CTNAG	7 cut(s)	29, 95, 135, 521, 720, 824, 873
BstF5I	GGATG	3 cut(s)	390, 420, 748
BstKTI	GATC	2 cut(s)	20, 442
BstMAI	GTCTC	2 cut(s)	129, 648
BstMBI	GATC	2 cut(s)	17, 439
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 304, 636, 801
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	871
BstSCI	CCNGG	2 cut(s)	376, 410
BstV1I	GCAGC	2 cut(s)	475, 796
BstV2I	GAAGAC	2 cut(s)	540, 746
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	107, 162, 298
BtsCI	GGATG	3 cut(s)	390, 420, 748
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	605
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	4 cut(s)	240, 309, 615, 763
Cfr10I	RCCGGY	2 cut(s)	22, 199
Cfr13I	GGNCC	2 cut(s)	105, 161
Csp6I	GTAC	2 cut(s)	341, 454
CviAII	CATG	2 cut(s)	868, 923
CviQI	GTAC	2 cut(s)	341, 454
DdeI	CTNAG	7 cut(s)	29, 95, 135, 521, 720, 824, 873
DpnI	GATC	2 cut(s)	19, 441
DpnII	GATC	2 cut(s)	17, 439
DraI	TTTAAA	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	2 cut(s)	871, 926
FatI	CATG	2 cut(s)	867, 922
FblI	GTMKAC	2 cut(s)	147, 285
Fnu4HI	GCNGC	4 cut(s)	489, 802, 810, 844
FokI	GGATG	3 cut(s)	377, 427, 755
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	4 cut(s)	489, 802, 810, 844
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	4 cut(s)	489, 802, 810, 844
GsaI	CCCAGC	1 cut(s)	666
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	3 cut(s)	107, 162, 298
HapII	CCGG	3 cut(s)	23, 200, 411
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	871, 926
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	3 cut(s)	470, 622, 919
HpaII	CCGG	3 cut(s)	23, 200, 411
HphI	GGTGA	5 cut(s)	12, 465, 532, 865, 928
Hpy166II	GTNNAC	3 cut(s)	148, 286, 343
Hpy188I	TCNGA	6 cut(s)	32, 39, 233, 262, 444, 670
Hpy188III	TCNNGA	2 cut(s)	167, 555
Hpy8I	GTNNAC	3 cut(s)	148, 286, 343
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	6 cut(s)	110, 118, 267, 272, 320, 414
HpyCH4III	ACNGT	2 cut(s)	502, 889
HpyCH4V	TGCA	4 cut(s)	603, 617, 733, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 304, 636, 801
HpyF3I	CTNAG	7 cut(s)	29, 95, 135, 521, 720, 824, 873
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	871, 926
Kzo9I	GATC	2 cut(s)	17, 439
LmnI	GCTCC	1 cut(s)	578
Lsp1109I	GCAGC	2 cut(s)	475, 796
LweI	GCATC	2 cut(s)	550, 597
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	175, 853
MalI	GATC	2 cut(s)	19, 441
MboI	GATC	2 cut(s)	17, 439
MboII	GAAGA	4 cut(s)	40, 399, 545, 746
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	3 cut(s)	52, 190, 882
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	5 cut(s)	174, 288, 311, 331, 945
MseI	TTAA	9 cut(s)	75, 267, 363, 462, 548, 642, 690, 789, 912
MslI	CAYNNNNRTG	1 cut(s)	851
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	3 cut(s)	23, 200, 411
MspR9I	CCNGG	2 cut(s)	378, 412
Mva1269I	GAATGC	3 cut(s)	240, 531, 630
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	32, 304, 636, 801
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	2 cut(s)	17, 439
NlaIII	CATG	2 cut(s)	871, 926
NlaIV	GGNNCC	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	1 cut(s)	871
OliI	CACNNNNGTG	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	3 cut(s)	240, 531, 630
PfeI	GAWTC	3 cut(s)	470, 622, 919
PflMI	CCANNNNNTGG	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	490, 803, 811, 845
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	105, 161
RsaI	GTAC	2 cut(s)	342, 455
RsaNI	GTAC	2 cut(s)	341, 454
RseI	CAYNNNNRTG	1 cut(s)	851
SacI	GAGCTC	1 cut(s)	37
SaqAI	TTAA	9 cut(s)	75, 267, 363, 462, 548, 642, 690, 789, 912
SatI	GCNGC	4 cut(s)	489, 802, 810, 844
Sau3AI	GATC	2 cut(s)	17, 439
Sau96I	GGNCC	2 cut(s)	105, 161
ScrFI	CCNGG	2 cut(s)	378, 412
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	9 cut(s)	37, 74, 331, 342, 406, 615, 690, 778, 918
SfaNI	GCATC	2 cut(s)	550, 597
SmiMI	CAYNNNNRTG	1 cut(s)	851
Sse9I	AATT	3 cut(s)	52, 190, 882
SsiI	CCGC	8 cut(s)	117, 128, 140, 197, 311, 359, 801, 843
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	1 cut(s)	81
SstI	GAGCTC	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	376, 410
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	502, 889
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	52, 190, 882
TauI	GCSGC	2 cut(s)	804, 846
TfiI	GAWTC	3 cut(s)	470, 622, 919
Tru1I	TTAA	9 cut(s)	75, 267, 363, 462, 548, 642, 690, 789, 912
Tru9I	TTAA	9 cut(s)	75, 267, 363, 462, 548, 642, 690, 789, 912
TscAI	CASTG	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	2 cut(s)	488, 809
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	7 cut(s)	339, 687, 723, 888, 895, 911, 930
TspRI	CASTG	1 cut(s)	605
Van91I	CCANNNNNTGG	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	1 cut(s)	871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	2 cut(s)	147, 285
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.