Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011303

Physical Location & Seq

Genomic Coordinates Reverse (-)

69044306 .. 69047466

Gene Structure 3161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG431700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAAGGGGTATACCCTGTGAGGCCACAAGTGCCAGCGGTTGGAGGATATGAAGGTGTGGGAGAGGTACACTCTGTCGGCTCTGCGGTTAAAGGACTATCGCCTGGAGATTTGGTCATCCCATCTCCACCTTCTTCCGGGATGTGGCAAACTTATGTTGTGAAAGATCAGAGTGTATGGTACAAGATTAATAAAGATTCACCCTTGGAATATGCTGCTACCATTACTGTAAATCCATTGACTGCTCTAAGAATGCTTGAAGACTTCACCACTTTAAAGTCAGGAGATGCTGTTGTTCAAAATGGAGCCACCAGCATCGTGGGGCAGTGCATTATTCAGCTTGCAAAGAATCGTGGCATTCACAGCGTTAATATTATAAGAGACAGGGCTGGGTCAGATGAAGTCAAGGAAAAGCTTAAAAAACTTGGTGCTGATGAAGTTTTTACTGAGAGCGAACTGCAAGTCAAGGATGTCAAGGGTCTTCTGGCTGGCCTACCCGAACCTGCATTGGGATTTAACTGCGTTGGCGGCAATGCTGCTTCTTTGGTTCTTAGATTTTTGGGGCGTGGCGGCACTATGGTGACTTATGGTGGCATGTCTAAGAAACCAATTACTGTATCAACTTCATATTTCATTTTTAAGGATCTTTCCTTGAGGGGATTCTGGTTGCAGAGTTGGATGAGTACAGAGAAGGCAGCAGAGTGTAGAGTTCTGATAGATCACCTCCTTGACCTAGCACGGGAAGGGAAATTAAAATATGAGATGGAGCTGGTTCCTTTCGACAGTTTCCACACTGCACTAGACAAAGCACTCGGGAAACAAGGGAGCCAACCGAAGCAAGTAATCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009536 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 map00062 map01100 map01212

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

284

Amino Acids

30.81

Weight (kDa)

8.8

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	3 - 41	5.6e-06	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	107 - 233	2e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45770 AT3G45770
fragaria_vesca	FvH4_3g34120
malus_domestica	MD03G1107400.v1.1
prunus_persica	Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1
pyrus_communis	pycom03g08690
rosa_chinensis	RchiOBHm_Chr5g0061771
rosa_laevigata	RLG00000035504
rosa_multiflora	Rmu_sc0003709.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018960
rosa_rugosa	Rorug05G0343400 Rorug05G0343500 Rorug05G0343600
rosa_samantha	Rh5AG404500 Rh5BG417600 Rh5CG442000 Rh5DG431700
rosa_wichuraiana	Rw5G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	4 cut(s)	38, 86, 528, 570
AclWI	GGATC	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	848
AfaI	GTAC	3 cut(s)	69, 182, 685
AfiI	CCNNNNNNNGG	5 cut(s)	41, 137, 144, 509, 739
AgsI	TTSAA	2 cut(s)	260, 299
AjnI	CCWGG	1 cut(s)	103
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	3 cut(s)	340, 415, 769
AluI	AGCT	3 cut(s)	340, 415, 769
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	651
Ama87I	CYCGRG	1 cut(s)	812
AoxI	GGCC	2 cut(s)	23, 490
ApeKI	GCWGC	3 cut(s)	215, 536, 695
ApoI	RAATTY	1 cut(s)	848
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
AseI	ATTAAT	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	192, 259, 592, 713
AvaI	CYCGRG	1 cut(s)	812
BbsI	GAAGAC	2 cut(s)	267, 473
BbvI	GCAGC	3 cut(s)	202, 523, 707
BccI	CCATC	2 cut(s)	130, 757
BciT130I	CCWGG	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	734, 800
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	5 cut(s)	216, 529, 537, 571, 696
BlsI	GCNGC	5 cut(s)	217, 530, 538, 572, 697
Bme1390I	CCNGG	2 cut(s)	105, 139
BmeT110I	CYCGRG	1 cut(s)	812
BmiI	GGNNCC	3 cut(s)	307, 774, 827
BmrFI	CCNGG	2 cut(s)	105, 139
BmsI	GCATC	2 cut(s)	277, 324
BpiI	GAAGAC	2 cut(s)	267, 473
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	673
BpuMI	CCSGG	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 276, 306
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 137, 144, 509, 739
Bse3DI	GCAATG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	4 cut(s)	117, 147, 475, 684
BseLI	CCNNNNNNNGG	5 cut(s)	41, 137, 144, 509, 739
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	438
BseXI	GCAGC	3 cut(s)	202, 523, 707
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	780
BshFI	GGCC	2 cut(s)	25, 492
BsiHKCI	CYCGRG	1 cut(s)	812
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	5 cut(s)	41, 137, 144, 509, 739
BsmAI	GTCTC	1 cut(s)	375
BsmI	GAATGC	2 cut(s)	258, 357
BsnI	GGCC	2 cut(s)	25, 492
BsoBI	CYCGRG	1 cut(s)	812
Bsp143I	GATC	3 cut(s)	166, 643, 718
BspACI	CCGC	4 cut(s)	38, 86, 528, 570
BspANI	GGCC	2 cut(s)	25, 492
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	3 cut(s)	307, 774, 827
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	166, 643, 718
BssNAI	GTATAC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	229, 616, 785
BstC8I	GCNNGC	3 cut(s)	36, 342, 490
BstDEI	CTNAG	4 cut(s)	248, 447, 551, 600
BstF5I	GGATG	4 cut(s)	117, 147, 475, 684
BstKTI	GATC	3 cut(s)	169, 646, 721
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	166, 643, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 363, 528
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	2 cut(s)	103, 137
BstV1I	GCAGC	3 cut(s)	202, 523, 707
BstV2I	GAAGAC	2 cut(s)	267, 473
BstX2I	RGATCY	1 cut(s)	643
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	643
BstZ17I	GTATAC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	25, 492
BtsCI	GGATG	4 cut(s)	117, 147, 475, 684
BtsI	GCAGTG	2 cut(s)	332, 792
BtsIMutI	CAGTG	2 cut(s)	332, 792
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	3 cut(s)	36, 342, 490
Csp6I	GTAC	3 cut(s)	68, 181, 684
CviAII	CATG	1 cut(s)	595
CviQI	GTAC	3 cut(s)	68, 181, 684
DdeI	CTNAG	4 cut(s)	248, 447, 551, 600
DpnI	GATC	3 cut(s)	168, 645, 720
DpnII	GATC	3 cut(s)	166, 643, 718
DraI	TTTAAA	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	812
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	598
FatI	CATG	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	216, 529, 537, 571, 696
FokI	GGATG	4 cut(s)	104, 154, 482, 691
Fsp4HI	GCNGC	5 cut(s)	216, 529, 537, 571, 696
FspBI	CTAG	2 cut(s)	734, 800
GluI	GCNGC	5 cut(s)	216, 529, 537, 571, 696
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	25, 492
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	197, 349, 660
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	4 cut(s)	192, 259, 592, 713
Hpy166II	GTNNAC	2 cut(s)	13, 70
Hpy188I	TCNGA	4 cut(s)	171, 397, 714, 854
Hpy188III	TCNNGA	2 cut(s)	282, 814
Hpy8I	GTNNAC	2 cut(s)	13, 70
HpyAV	CCTTC	4 cut(s)	47, 141, 685, 737
HpyCH4III	ACNGT	3 cut(s)	229, 616, 785
HpyCH4V	TGCA	6 cut(s)	330, 344, 460, 506, 670, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 363, 528
HpyF3I	CTNAG	4 cut(s)	248, 447, 551, 600
Hsp92II	CATG	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	166, 643, 718
LmnI	GCTCC	3 cut(s)	305, 766, 825
Lsp1109I	GCAGC	3 cut(s)	202, 523, 707
LweI	GCATC	2 cut(s)	277, 324
MaeI	CTAG	2 cut(s)	734, 800
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	3 cut(s)	168, 645, 720
MboI	GATC	3 cut(s)	166, 643, 718
MboII	GAAGA	3 cut(s)	126, 272, 473
MflI	RGATCY	1 cut(s)	643
MluCI	AATT	3 cut(s)	609, 749, 848
MmeI	TCCRAC	2 cut(s)	22, 656
MnlI	CCTC	5 cut(s)	15, 38, 58, 648, 734
MseI	TTAA	8 cut(s)	90, 189, 275, 369, 417, 516, 639, 752
MslI	CAYNNNNRTG	1 cut(s)	578
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	105, 139
Mva1269I	GAATGC	2 cut(s)	258, 357
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	31, 363, 528
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	166, 643, 718
NlaIII	CATG	1 cut(s)	598
NlaIV	GGNNCC	3 cut(s)	307, 774, 827
NmuCI	GTSAC	1 cut(s)	580
NspI	RCATGY	1 cut(s)	598
OliI	CACNNNNGTG	1 cut(s)	578
PctI	GAATGC	2 cut(s)	258, 357
PfeI	GAWTC	3 cut(s)	197, 349, 660
PflMI	CCANNNNNTGG	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	217, 530, 538, 572, 697
PshBI	ATTAAT	1 cut(s)	189
PsiI	TTATAA	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	3 cut(s)	307, 774, 827
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	3 cut(s)	69, 182, 685
RsaNI	GTAC	3 cut(s)	68, 181, 684
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	8 cut(s)	90, 189, 275, 369, 417, 516, 639, 752
SatI	GCNGC	5 cut(s)	216, 529, 537, 571, 696
Sau3AI	GATC	3 cut(s)	166, 643, 718
ScrFI	CCNGG	2 cut(s)	105, 139
SetI	ASST	9 cut(s)	58, 69, 133, 342, 417, 505, 726, 735, 771
SfaNI	GCATC	2 cut(s)	277, 324
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
Sse9I	AATT	3 cut(s)	609, 749, 848
SsiI	CCGC	4 cut(s)	38, 86, 528, 570
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	734, 800
StyD4I	CCNGG	2 cut(s)	103, 137
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	229, 616, 785
TaqI	TCGA	1 cut(s)	780
TasI	AATT	3 cut(s)	609, 749, 848
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	2 cut(s)	531, 573
TfiI	GAWTC	3 cut(s)	197, 349, 660
Tru1I	TTAA	8 cut(s)	90, 189, 275, 369, 417, 516, 639, 752
Tru9I	TTAA	8 cut(s)	90, 189, 275, 369, 417, 516, 639, 752
TscAI	CASTG	2 cut(s)	332, 799
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	3 cut(s)	215, 536, 695
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	6 cut(s)	17, 66, 414, 450, 615, 622
TspRI	CASTG	2 cut(s)	332, 799
Van91I	CCANNNNNTGG	1 cut(s)	41
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	1 cut(s)	848
XceI	RCATGY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	2 cut(s)	734, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.