Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011303

Physical Location & Seq

Genomic Coordinates Forward (+)

6175236 .. 6178900

Gene Structure 3665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G090200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGTCTCTGGTTCGATCGGCGACTCTCAGATTTCTCAAACCACTCGGCAATCTCACGCTAAACTACGCCGTTAACCACCCGCGAACCCAAACCCTAAGCTTCCGGGCTTTCTCGACGACCTTGTCGCCGCCGTCAAAGGCTGTGGTGTACGAGCAACACGGTCCTCCCGATAGGGTCACCAGAGTGATACAGTTGCCACCAGTTGAAGTGAAAGAGAACGATGTGTGCGTGAAAATGTTGGCTGCCCCAATCAACCCTTCTGATATTAATCGAATTGAAGGGGTATACCCTGTGAGGCCACAAGTGCCAGCTGTTGGAGGATATGAAGGTGTAGGAGAAGTACATTCGGTCGGGGCTGCAGTTAAGGGTTTCTTGCCCGGGGATTTAGTCATCCCATCTCCGCCTTCTTTTGGGACATGGCAGACTTATATTGTGAAGGATCAGAATGTATGGTACAAAATAAATAAGAAATCACCCCTGGAATATGCCGCCACTATTACGGTTAATCCTTTGACTGCTCTAAGAATGCTTGAAGACTTCGTTACTTTAAACAAAGGAGATGCTATTGTTCAAAATGGAGCCACAAGCATTGTAGGGCAGTGCATTATTCAGCTTGCGCACCATCGTGGCATCCATAACATTAATATAATAAGGGACAGGACTGGGTCTGATGAAGTAAAAGAGAAACTCAAAAACCTTGGTGCTGATGAAGTTTTTACTGAGAGTCAACTGGAAGTCAAGAATGTCAAGGGTCTTCTGTCTGGTATACCTGAACCTGCATTAGGATTTAACTGCGTTGGAGGCAATGCTGCTTCTTTGGTTCTTAAATTTTTGGGGCGGGGCGGAACTATGGTGACATATGGTGGAATGTCTAAGAAACCCATTACCGTATCAACATCATCTTTCATTTTTAAGGATCTTTCCTTGAGGGGATTCTGGTTGCAGAATTGGATGAGTACAGAGAAGGCAAAAGGGTGTAGAGTTTTGATAGATTCCCTCCTGGACCTAGCACGGGAAGGGAAGTTAAAATATGAGATGGAGCTGGTTCCATTTGACAATTTCAATGCTGCAATAGATAAGGCCCTTGGGAAGCAAGGGAGCCAACCAAAACAAGTTATCAATTTTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009536 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 map00062 map01100 map01212

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

379

Amino Acids

41.3

Weight (kDa)

9.26

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45770 AT3G45770
fragaria_vesca	FvH4_3g34120
malus_domestica	MD03G1107400.v1.1
prunus_persica	Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1
pyrus_communis	pycom03g08690
rosa_chinensis	RchiOBHm_Chr5g0061771
rosa_laevigata	RLG00000035504
rosa_multiflora	Rmu_sc0003709.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018960
rosa_rugosa	Rorug05G0343400 Rorug05G0343500 Rorug05G0343600
rosa_samantha	Rh5AG404500 Rh5BG417600 Rh5CG442000 Rh5DG431700
rosa_wichuraiana	Rw5G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
Acc16I	TGCGCA	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	787
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	2 cut(s)	288, 769
AccII	CGCG	1 cut(s)	85
AciI	CCGC	6 cut(s)	83, 131, 404, 492, 841, 846
AclWI	GGATC	2 cut(s)	450, 927
AcsI	RAATTY	1 cut(s)	830
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	152, 345, 458, 961
AfiI	CCNNNNNNNGG	4 cut(s)	317, 413, 785, 1015
AgsI	TTSAA	6 cut(s)	209, 281, 536, 575, 1066, 1130
AjnI	CCWGG	2 cut(s)	480, 1002
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AleI	CACNNNNGTG	2 cut(s)	185, 627
AluBI	AGCT	4 cut(s)	102, 314, 616, 1045
AluI	AGCT	4 cut(s)	102, 314, 616, 1045
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	450, 927
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	299, 1083
ApeKI	GCWGC	4 cut(s)	245, 359, 812, 1070
ApoI	RAATTY	1 cut(s)	830
AseI	ATTAAT	2 cut(s)	270, 645
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	3 cut(s)	164, 1006, 1084
AsuC2I	CCSGG	3 cut(s)	107, 381, 382
AsuHPI	GGTGA	3 cut(s)	172, 468, 868
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	164, 1006
BbsI	GAAGAC	2 cut(s)	543, 749
BbvI	GCAGC	4 cut(s)	232, 346, 799, 1057
BccI	CCATC	3 cut(s)	406, 633, 1033
BceAI	ACGGC	2 cut(s)	56, 118
BciT130I	CCWGG	2 cut(s)	482, 1004
BcnI	CCSGG	3 cut(s)	107, 381, 382
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	1010
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	787
BisI	GCNGC	6 cut(s)	131, 246, 360, 492, 813, 1071
BlsI	GCNGC	6 cut(s)	132, 247, 361, 493, 814, 1072
Bme1390I	CCNGG	5 cut(s)	107, 381, 382, 482, 1004
Bme18I	GGWCC	2 cut(s)	164, 1006
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	3 cut(s)	164, 1006, 1084
BmiI	GGNNCC	3 cut(s)	583, 1050, 1103
BmrFI	CCNGG	5 cut(s)	107, 381, 382, 482, 1004
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	553, 642
BmuI	ACTGGG	1 cut(s)	675
BpiI	GAAGAC	2 cut(s)	543, 749
Bpu10I	CCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	949
BpuMI	CCSGG	3 cut(s)	107, 381, 382
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	5 cut(s)	380, 381, 480, 700, 1087
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 413, 785, 1015
Bse1I	ACTGG	3 cut(s)	203, 670, 738
Bse3DI	GCAATG	1 cut(s)	814
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	482, 1004
BseDI	CCNNGG	5 cut(s)	380, 381, 480, 700, 1087
BseGI	GGATG	3 cut(s)	393, 633, 960
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	4 cut(s)	317, 413, 785, 1015
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	2 cut(s)	43, 714
BseNI	ACTGG	3 cut(s)	203, 670, 738
BseXI	GCAGC	4 cut(s)	232, 346, 799, 1057
Bsh1236I	CGCG	1 cut(s)	85
Bsh1285I	CGRYCG	2 cut(s)	20, 354
BshFI	GGCC	2 cut(s)	301, 1085
BsiEI	CGRYCG	2 cut(s)	20, 354
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	106, 381
BslFI	GGGAC	2 cut(s)	430, 671
BslI	CCNNNNNNNGG	4 cut(s)	317, 413, 785, 1015
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	430, 671
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	2 cut(s)	301, 1085
BsoBI	CYCGRG	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	17, 442, 919
BspACI	CCGC	6 cut(s)	83, 131, 404, 492, 841, 846
BspANI	GGCC	2 cut(s)	301, 1085
BspCNI	CTCAG	2 cut(s)	42, 715
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	3 cut(s)	583, 1050, 1103
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	787
BspPI	GGATC	2 cut(s)	450, 927
BsrDI	GCAATG	1 cut(s)	814
BsrI	ACTGG	3 cut(s)	203, 670, 738
BssECI	CCNNGG	5 cut(s)	380, 381, 480, 700, 1087
BssMI	GATC	3 cut(s)	17, 442, 919
BssNAI	GTATAC	2 cut(s)	289, 770
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	700, 1087
Bst1107I	GTATAC	2 cut(s)	289, 770
Bst2UI	CCWGG	2 cut(s)	482, 1004
Bst4CI	ACNGT	4 cut(s)	164, 195, 505, 892
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	312, 618
BstDEI	CTNAG	5 cut(s)	29, 98, 524, 723, 876
BstEII	GGTNACC	1 cut(s)	178
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstF5I	GGATG	3 cut(s)	393, 633, 960
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	3 cut(s)	20, 445, 922
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	17, 442, 919
BstMCI	CGRYCG	2 cut(s)	20, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 804
BstNI	CCWGG	2 cut(s)	482, 1004
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	5 cut(s)	105, 379, 380, 480, 1002
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	232, 346, 799, 1057
BstV2I	GAAGAC	2 cut(s)	543, 749
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
BstZ17I	GTATAC	2 cut(s)	289, 770
BsuRI	GGCC	2 cut(s)	301, 1085
BtsCI	GGATG	3 cut(s)	393, 633, 960
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	1 cut(s)	608
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	2 cut(s)	312, 618
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	3 cut(s)	164, 1006, 1084
Cfr9I	CCCGGG	1 cut(s)	380
Csp6I	GTAC	4 cut(s)	151, 344, 457, 960
CspCI	CAANNNNNGTGG	4 cut(s)	126, 161, 574, 609
CviAII	CATG	1 cut(s)	420
CviQI	GTAC	4 cut(s)	151, 344, 457, 960
DdeI	CTNAG	5 cut(s)	29, 98, 524, 723, 876
DpnI	GATC	3 cut(s)	19, 444, 921
DpnII	GATC	3 cut(s)	17, 442, 919
DraI	TTTAAA	1 cut(s)	552
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	2 cut(s)	393, 861
Eco130I	CCWWGG	2 cut(s)	700, 1087
Eco47I	GGWCC	2 cut(s)	164, 1006
Eco88I	CYCGRG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoO65I	GGTNACC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	480, 1002
EcoT14I	CCWWGG	2 cut(s)	700, 1087
ErhI	CCWWGG	2 cut(s)	700, 1087
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	423
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	2 cut(s)	430, 671
FatI	CATG	1 cut(s)	419
FauI	CCCGC	2 cut(s)	90, 834
FauNDI	CATATG	1 cut(s)	862
FblI	GTMKAC	2 cut(s)	288, 769
Fnu4HI	GCNGC	6 cut(s)	131, 246, 360, 492, 813, 1071
FokI	GGATG	3 cut(s)	380, 620, 967
Fsp4HI	GCNGC	6 cut(s)	131, 246, 360, 492, 813, 1071
FspBI	CTAG	1 cut(s)	1010
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	6 cut(s)	131, 246, 360, 492, 813, 1071
HaeIII	GGCC	2 cut(s)	301, 1085
HapII	CCGG	2 cut(s)	106, 381
HhaI	GCGC	1 cut(s)	622
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	423
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	2 cut(s)	76, 731
HindII	GTYRAC	2 cut(s)	76, 731
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	4 cut(s)	25, 727, 936, 995
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	106, 381
HphI	GGTGA	3 cut(s)	172, 468, 868
Hpy166II	GTNNAC	5 cut(s)	76, 151, 289, 731, 770
Hpy188I	TCNGA	4 cut(s)	32, 265, 447, 673
Hpy188III	TCNNGA	3 cut(s)	115, 170, 742
Hpy8I	GTNNAC	5 cut(s)	76, 151, 289, 731, 770
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	7 cut(s)	270, 275, 323, 417, 433, 961, 1013
HpyCH4III	ACNGT	4 cut(s)	164, 195, 505, 892
HpyCH4V	TGCA	5 cut(s)	362, 606, 782, 946, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 804
HpyF3I	CTNAG	5 cut(s)	29, 98, 524, 723, 876
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	423
HspAI	GCGC	1 cut(s)	620
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	17, 442, 919
LmnI	GCTCC	3 cut(s)	581, 1042, 1101
Lsp1109I	GCAGC	4 cut(s)	232, 346, 799, 1057
LweI	GCATC	2 cut(s)	553, 642
MaeI	CTAG	1 cut(s)	1010
MaeIII	GTNAC	3 cut(s)	178, 544, 856
MalI	GATC	3 cut(s)	19, 444, 921
MboI	GATC	3 cut(s)	17, 442, 919
MboII	GAAGA	2 cut(s)	548, 749
MflI	RGATCY	1 cut(s)	919
MluCI	AATT	5 cut(s)	276, 830, 949, 1060, 1123
MlyI	GAGTC	2 cut(s)	19, 736
MmeI	TCCRAC	2 cut(s)	298, 781
MnlI	CCTC	6 cut(s)	177, 291, 314, 797, 924, 1010
MslI	CAYNNNNRTG	2 cut(s)	185, 627
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	2 cut(s)	106, 381
MspR9I	CCNGG	5 cut(s)	107, 381, 382, 482, 1004
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	2 cut(s)	482, 1004
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	307, 804
NciI	CCSGG	3 cut(s)	107, 381, 382
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	3 cut(s)	17, 442, 919
NlaIII	CATG	1 cut(s)	423
NlaIV	GGNNCC	3 cut(s)	583, 1050, 1103
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	178, 856
NsbI	TGCGCA	1 cut(s)	621
OliI	CACNNNNGTG	2 cut(s)	185, 627
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 228
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	936, 995
PflFI	GACNNNGTC	2 cut(s)	124, 667
PflMI	CCANNNNNTGG	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	1002
PkrI	GCNGC	6 cut(s)	132, 247, 361, 493, 814, 1072
Ple19I	CGATCG	1 cut(s)	20
PleI	GAGTC	2 cut(s)	19, 735
PpsI	GAGTC	2 cut(s)	19, 735
PshBI	ATTAAT	2 cut(s)	270, 645
Psp6I	CCWGG	2 cut(s)	480, 1002
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	2 cut(s)	480, 1002
PspN4I	GGNNCC	3 cut(s)	583, 1050, 1103
PspPI	GGNCC	3 cut(s)	164, 1006, 1084
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	919
PsyI	GACNNNGTC	2 cut(s)	124, 667
PvuI	CGATCG	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	4 cut(s)	152, 345, 458, 961
RsaNI	GTAC	4 cut(s)	151, 344, 457, 960
RseI	CAYNNNNRTG	2 cut(s)	185, 627
SatI	GCNGC	6 cut(s)	131, 246, 360, 492, 813, 1071
Sau3AI	GATC	3 cut(s)	17, 442, 919
Sau96I	GGNCC	3 cut(s)	164, 1006, 1084
SchI	GAGTC	2 cut(s)	19, 736
ScrFI	CCNGG	5 cut(s)	107, 381, 382, 482, 1004
SfaNI	GCATC	2 cut(s)	553, 642
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	164, 1006
SmaI	CCCGGG	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	185, 627
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
Sse9I	AATT	5 cut(s)	276, 830, 949, 1060, 1123
SsiI	CCGC	6 cut(s)	83, 131, 404, 492, 841, 846
SspMI	CTAG	1 cut(s)	1010
StyD4I	CCNGG	5 cut(s)	105, 379, 380, 480, 1002
StyI	CCWWGG	2 cut(s)	700, 1087
TaaI	ACNGT	4 cut(s)	164, 195, 505, 892
TaqI	TCGA	3 cut(s)	16, 116, 274
TaqII	GACCGA	1 cut(s)	340
TasI	AATT	5 cut(s)	276, 830, 949, 1060, 1123
TatI	WGTACW	2 cut(s)	343, 959
TauI	GCSGC	2 cut(s)	133, 494
TfiI	GAWTC	2 cut(s)	936, 995
TscAI	CASTG	1 cut(s)	608
TseFI	GTSAC	2 cut(s)	178, 856
TseI	GCWGC	4 cut(s)	245, 359, 812, 1070
Tsp45I	GTSAC	2 cut(s)	178, 856
TspDTI	ATGAA	4 cut(s)	342, 690, 726, 898
TspMI	CCCGGG	1 cut(s)	380
TspRI	CASTG	1 cut(s)	608
Tth111I	GACNNNGTC	2 cut(s)	124, 667
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	164, 1006
VspI	ATTAAT	2 cut(s)	270, 645
XagI	CCTNNNNNAGG	1 cut(s)	783
XapI	RAATTY	1 cut(s)	830
XmaI	CCCGGG	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	288, 769
XspI	CTAG	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.