FvH4_3g34120

trans-2-enoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011303
Physical Location & Seq
Reverse (-)
29517366 .. 29520789
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34120.t1

Sequence Viewer

Length: 1128 bp
ATGGCGTCGGCGGTTCGACCACCGGCTCTCAGAGCTCTGAAACCACTCTTCAATTTCACCCTCCACGACGCCTTAAACCCTAGAGCCCAAACCCTAAGCCTTCGGGCCTTCTCCTCCGCCATGTCTCCGCCGTCTAAGGCCGTGGTCTACGAGCAACACGGCCCTCCCGATAGCGTTACCAGAGTGATAAATTTACCGCCGGTTGAAGTGAAAGAGAACGATGTCTGTGTCAAAATGCTGGCTTCTCCTATTAACCCTTCTGACATTAACCGGATTGAAGGGGTATACCCTGTGAGGCCACAAGTGCCGGCGGTGGGAGGATACGAAGGTGTGGGAGAGGTACATTCTGTCGGCTCTGCGGTTAAAGGACTATCGCCCGGAGATTTGGTTATTCCGTCTCCACCTTCTTCCGGGATGTGGCAAACTTATGTTGTGAAAGATCAGAGTGTCTGGTACAAGATTAATAAAGATTCACCTGTGGAATATGCTGCTACTGTTACTGTAAATCCATTGACTGCTCTTAGAATGCTCGAAGACTTCACCACTTTAAAGTCAGGAGATACTGTTGTTCAAAATGGAGCCACCAGCATCGTGGGGCAGTGCATTATTCAGCTTGCAAAGAATCGTGGCATTCATAGTGTTAATATTATAAGAGACAGGGCTGGGTCAGATGAAGTAAAGGAAAAGCTTAAAAAACTTGGTGCCGATCAGGTTTTTACTGAGAGCGAACTGCAAGTCAAGGATGTCAAGGGTCTTCTGGCTGGCATACCTGAACCTGCATTAGGATTTAACTGCGTCGGAGGCAATGCTGCTTCTTTGGTTCTTAAGTTTTTGGGGCGTGGCGGCACTATGGTGACTTATGGTGGCATGTCTAAGAAACCAATTACTGTATCAACTTCATATTTCATTTTTAAGGATCTTTCCTTGAGGGGATTCTGGTTGCAGAGTTGGATGAGTACAGAGAAGGCAGCAGAGTGCAGAGTTCTGATAGATCACCTCCTTGACCTAGCTCGGGAGAGGAAGTTAAAATATGAGATGGAGCTGGTTCCTTTTGACAATTTCCACACTGCACTTGACAAAGCACTTGGGAAACAAGGGAGCCGACCTAAGCAGGTCATCAAATTCTGA

Protein Analysis

376

Amino Acids

40.8

Weight (kDa)

9.17

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 72 - 132 7.1e-12 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 198 - 324 4.5e-16 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45770 AT3G45770
fragaria_vesca FvH4_3g34120
malus_domestica MD03G1107400.v1.1
prunus_persica Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1
pyrus_communis pycom03g08690
rosa_chinensis RchiOBHm_Chr5g0061771
rosa_laevigata RLG00000035504
rosa_multiflora Rmu_sc0003709.1_g000010
rosa_roxburghii Rroxscaffold_1G00018960
rosa_rugosa Rorug05G0343400 Rorug05G0343500 Rorug05G0343600
rosa_samantha Rh5AG404500 Rh5BG417600 Rh5CG442000 Rh5DG431700
rosa_wichuraiana Rw5G038000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
Acc36I ACCTGC 2 cut(s) 784, 1102
AccB1I GGYRCC 1 cut(s) 701
AccI GTMKAC 2 cut(s) 147, 285
AciI CCGC 7 cut(s) 11, 117, 128, 197, 311, 359, 843
AclWI GGATC 1 cut(s) 924
AcsI RAATTY 2 cut(s) 190, 1121
AcyI GRCGYC 2 cut(s) 5, 69
AfaI GTAC 3 cut(s) 342, 455, 958
AfiI CCNNNNNNNGG 5 cut(s) 314, 410, 417, 782, 1012
AflII CTTAAG 1 cut(s) 824
AgsI TTSAA 4 cut(s) 52, 206, 278, 572
AleI CACNNNNGTG 1 cut(s) 851
AluBI AGCT 5 cut(s) 35, 613, 688, 1010, 1042
AluI AGCT 5 cut(s) 35, 613, 688, 1010, 1042
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 3 cut(s) 129, 402, 648
AlwI GGATC 1 cut(s) 924
Ama87I CYCGRG 1 cut(s) 1011
AoxI GGCC 4 cut(s) 105, 138, 160, 296
ApeKI GCWGC 3 cut(s) 488, 809, 968
ApoI RAATTY 2 cut(s) 190, 1121
ArsI GACNNNNNNTTYG 2 cut(s) 720, 752
AseI ATTAAT 1 cut(s) 462
AspS9I GGNCC 2 cut(s) 105, 161
AsuC2I CCSGG 2 cut(s) 378, 412
AsuHPI GGTGA 5 cut(s) 49, 465, 532, 865, 986
AvaI CYCGRG 1 cut(s) 1011
BaeI ACNNNNGTAYC 4 cut(s) 313, 346, 552, 585
BanI GGYRCC 1 cut(s) 701
BanII GRGCYC 2 cut(s) 37, 88
BbsI GAAGAC 2 cut(s) 540, 746
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 475, 796, 980
BccI CCATC 1 cut(s) 1030
BceAI ACGGC 3 cut(s) 115, 125, 175
BciVI GTATCC 1 cut(s) 314
BcnI CCSGG 2 cut(s) 378, 412
BcoDI GTCTC 3 cut(s) 129, 402, 648
BfaI CTAG 2 cut(s) 81, 1007
BfrI CTTAAG 1 cut(s) 824
BfuAI ACCTGC 2 cut(s) 784, 1102
BfuI GTATCC 1 cut(s) 314
BisI GCNGC 4 cut(s) 489, 810, 844, 969
BlsI GCNGC 4 cut(s) 490, 811, 845, 970
Bme1390I CCNGG 2 cut(s) 378, 412
BmeT110I CYCGRG 1 cut(s) 1011
BmgT120I GGNCC 2 cut(s) 105, 161
BmiI GGNNCC 4 cut(s) 580, 703, 1047, 1100
BmrFI CCNGG 2 cut(s) 378, 412
BmsI GCATC 1 cut(s) 597
BpiI GAAGAC 2 cut(s) 540, 746
Bpu10I CCTNAGC 2 cut(s) 95, 1107
BpuEI CTTGAG 1 cut(s) 946
BpuMI CCSGG 2 cut(s) 378, 412
BsaHI GRCGYC 2 cut(s) 5, 69
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 6 cut(s) 372, 402, 549, 579, 1007, 1037
Bsc4I CCNNNNNNNGG 5 cut(s) 314, 410, 417, 782, 1012
Bse118I RCCGGY 3 cut(s) 22, 199, 307
Bse3DI GCAATG 1 cut(s) 811
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 420, 748, 957
BseLI CCNNNNNNNGG 5 cut(s) 314, 410, 417, 782, 1012
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 2 cut(s) 43, 711
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 3 cut(s) 475, 796, 980
BseYI CCCAGC 1 cut(s) 662
BsgI GTGCAG 2 cut(s) 997, 1053
BshFI GGCC 4 cut(s) 107, 140, 162, 298
BshNI GGYRCC 1 cut(s) 701
BsiHKAI GWGCWC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 1011
BsiSI CCGG 6 cut(s) 23, 200, 271, 308, 378, 411
BslI CCNNNNNNNGG 5 cut(s) 314, 410, 417, 782, 1012
BsmAI GTCTC 3 cut(s) 129, 402, 648
BsmBI CGTCTC 1 cut(s) 402
BsmI GAATGC 2 cut(s) 531, 630
BsnI GGCC 4 cut(s) 107, 140, 162, 298
BsoBI CYCGRG 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 37, 88
Bsp143I GATC 4 cut(s) 439, 706, 916, 991
BspACI CCGC 7 cut(s) 11, 117, 128, 197, 311, 359, 843
BspANI GGCC 4 cut(s) 107, 140, 162, 298
BspCNI CTCAG 2 cut(s) 42, 712
BspLI GGNNCC 4 cut(s) 580, 703, 1047, 1100
BspMI ACCTGC 2 cut(s) 784, 1102
BspPI GGATC 1 cut(s) 924
BspT107I GGYRCC 1 cut(s) 701
BspTI CTTAAG 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 811
BsrFI RCCGGY 3 cut(s) 22, 199, 307
BssAI RCCGGY 3 cut(s) 22, 199, 307
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 4 cut(s) 439, 706, 916, 991
BssNAI GTATAC 1 cut(s) 286
BssNI GRCGYC 2 cut(s) 5, 69
Bst1107I GTATAC 1 cut(s) 286
Bst4CI ACNGT 4 cut(s) 496, 502, 565, 889
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 2 cut(s) 5, 69
BstAFI CTTAAG 1 cut(s) 824
BstC8I GCNNGC 4 cut(s) 240, 309, 615, 763
BstDEI CTNAG 7 cut(s) 29, 95, 135, 521, 720, 873, 1107
BstDSI CCRYGG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 3 cut(s) 420, 748, 957
BstKTI GATC 4 cut(s) 442, 709, 919, 994
BstMAI GTCTC 3 cut(s) 129, 402, 648
BstMBI GATC 4 cut(s) 439, 706, 916, 991
BstMWI GCNNNNNNNGC 3 cut(s) 32, 304, 801
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 2 cut(s) 376, 410
BstV1I GCAGC 3 cut(s) 475, 796, 980
BstV2I GAAGAC 2 cut(s) 540, 746
BstX2I RGATCY 1 cut(s) 916
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 1 cut(s) 916
BstZ17I GTATAC 1 cut(s) 286
BsuI GTATCC 1 cut(s) 314
BsuRI GGCC 4 cut(s) 107, 140, 162, 298
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 420, 748, 957
BtsI GCAGTG 2 cut(s) 605, 1065
BtsIMutI CAGTG 2 cut(s) 605, 1065
BveI ACCTGC 2 cut(s) 784, 1102
Cac8I GCNNGC 4 cut(s) 240, 309, 615, 763
Cfr10I RCCGGY 3 cut(s) 22, 199, 307
Cfr13I GGNCC 2 cut(s) 105, 161
CseI GACGC 2 cut(s) 77, 784
Csp6I GTAC 3 cut(s) 341, 454, 957
CviAII CATG 2 cut(s) 121, 868
CviQI GTAC 3 cut(s) 341, 454, 957
DdeI CTNAG 7 cut(s) 29, 95, 135, 521, 720, 873, 1107
DpnI GATC 4 cut(s) 441, 708, 918, 993
DpnII GATC 4 cut(s) 439, 706, 916, 991
DraI TTTAAA 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 2 cut(s) 106, 117
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 2 cut(s) 37, 88
Eco53kI GAGCTC 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 1011
EcoICRI GAGCTC 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoT38I GRGCYC 2 cut(s) 37, 88
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 2 cut(s) 124, 871
FatI CATG 2 cut(s) 120, 867
FblI GTMKAC 2 cut(s) 147, 285
Fnu4HI GCNGC 4 cut(s) 489, 810, 844, 969
FokI GGATG 3 cut(s) 427, 755, 964
FriOI GRGCYC 2 cut(s) 37, 88
Fsp4HI GCNGC 4 cut(s) 489, 810, 844, 969
FspBI CTAG 2 cut(s) 81, 1007
GluI GCNGC 4 cut(s) 489, 810, 844, 969
GsaI CCCAGC 1 cut(s) 666
HaeIII GGCC 4 cut(s) 107, 140, 162, 298
HapII CCGG 6 cut(s) 23, 200, 271, 308, 378, 411
HgaI GACGC 2 cut(s) 77, 784
Hin1I GRCGYC 2 cut(s) 5, 69
Hin1II CATG 2 cut(s) 124, 871
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 3 cut(s) 470, 622, 933
HpaII CCGG 6 cut(s) 23, 200, 271, 308, 378, 411
HphI GGTGA 5 cut(s) 49, 465, 532, 865, 986
Hpy166II GTNNAC 2 cut(s) 148, 286
Hpy188I TCNGA 8 cut(s) 32, 39, 262, 444, 670, 800, 987, 1127
Hpy188III TCNNGA 3 cut(s) 167, 555, 1013
Hpy8I GTNNAC 2 cut(s) 148, 286
Hpy99I CGWCG 3 cut(s) 10, 71, 800
HpyAV CCTTC 7 cut(s) 110, 118, 267, 272, 320, 414, 958
HpyCH4III ACNGT 4 cut(s) 496, 502, 565, 889
HpyCH4V TGCA 7 cut(s) 603, 617, 733, 779, 943, 978, 1070
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 304, 801
HpyF3I CTNAG 7 cut(s) 29, 95, 135, 521, 720, 873, 1107
Hsp92I GRCGYC 2 cut(s) 5, 69
Hsp92II CATG 2 cut(s) 124, 871
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 4 cut(s) 439, 706, 916, 991
LmnI GCTCC 3 cut(s) 578, 1039, 1098
Lsp1109I GCAGC 3 cut(s) 475, 796, 980
LweI GCATC 1 cut(s) 597
MaeI CTAG 2 cut(s) 81, 1007
MaeIII GTNAC 3 cut(s) 175, 496, 853
MalI GATC 4 cut(s) 441, 708, 918, 993
MboI GATC 4 cut(s) 439, 706, 916, 991
MboII GAAGA 4 cut(s) 40, 399, 545, 746
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 2 cut(s) 37, 88
MluCI AATT 5 cut(s) 52, 190, 882, 1057, 1121
MmeI TCCRAC 2 cut(s) 778, 929
MroNI GCCGGC 1 cut(s) 307
MslI CAYNNNNRTG 1 cut(s) 851
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 6 cut(s) 23, 200, 271, 308, 378, 411
MspR9I CCNGG 2 cut(s) 378, 412
Mva1269I GAATGC 2 cut(s) 531, 630
MwoI GCNNNNNNNGC 3 cut(s) 32, 304, 801
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 2 cut(s) 378, 412
NdeII GATC 4 cut(s) 439, 706, 916, 991
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 2 cut(s) 124, 871
NlaIV GGNNCC 4 cut(s) 580, 703, 1047, 1100
NmuCI GTSAC 1 cut(s) 853
NspI RCATGY 1 cut(s) 871
OliI CACNNNNGTG 1 cut(s) 851
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 2 cut(s) 531, 630
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 470, 622, 933
PfoI TCCNGGA 1 cut(s) 410
PkrI GCNGC 4 cut(s) 490, 811, 845, 970
PshBI ATTAAT 1 cut(s) 462
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 662
PspN4I GGNNCC 4 cut(s) 580, 703, 1047, 1100
PspPI GGNCC 2 cut(s) 105, 161
PsuI RGATCY 1 cut(s) 916
RsaI GTAC 3 cut(s) 342, 455, 958
RsaNI GTAC 3 cut(s) 341, 454, 957
RseI CAYNNNNRTG 1 cut(s) 851
SacI GAGCTC 1 cut(s) 37
SatI GCNGC 4 cut(s) 489, 810, 844, 969
Sau3AI GATC 4 cut(s) 439, 706, 916, 991
Sau96I GGNCC 2 cut(s) 105, 161
ScrFI CCNGG 2 cut(s) 378, 412
SduI GDGCHC 2 cut(s) 37, 88
SfaNI GCATC 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 851
SmlI CTYRAG 2 cut(s) 824, 925
SmoI CTYRAG 2 cut(s) 824, 925
Sse9I AATT 5 cut(s) 52, 190, 882, 1057, 1121
SsiI CCGC 7 cut(s) 11, 117, 128, 197, 311, 359, 843
SspI AATATT 1 cut(s) 646
SspMI CTAG 2 cut(s) 81, 1007
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 2 cut(s) 376, 410
TaaI ACNGT 4 cut(s) 496, 502, 565, 889
TaqI TCGA 2 cut(s) 16, 531
TasI AATT 5 cut(s) 52, 190, 882, 1057, 1121
TatI WGTACW 1 cut(s) 956
TauI GCSGC 1 cut(s) 846
TfiI GAWTC 3 cut(s) 470, 622, 933
TscAI CASTG 2 cut(s) 605, 1072
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 3 cut(s) 488, 809, 968
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 4 cut(s) 623, 687, 888, 895
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 2 cut(s) 605, 1072
Vha464I CTTAAG 1 cut(s) 824
VspI ATTAAT 1 cut(s) 462
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 2 cut(s) 190, 1121
XceI RCATGY 1 cut(s) 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmiI GTMKAC 2 cut(s) 147, 285
XspI CTAG 2 cut(s) 81, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.