Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011303

Physical Location & Seq

Genomic Coordinates Forward (+)

9257248 .. 9261006

Gene Structure 3759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1107400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCGTCTCTGGTTCGATCAGCTACTCTCAGAGCACTGAAACCACTTTGCAATGTCACCCTAAATGACGCCGTCCTCCGCCGGTCCCAAACCCTGAGCGTGCGGGCTTTCTCCACGACCTTATCGCCGCCGTCTAAGGCGGTGGTATACGAGCAACACGGTCCTCCCGACAGGGTCACCAGAGTGATAGAATTACCGCCGGTTGAAGTGAAGGAGAACGATGTGTGTGTGAAAATGTTGGCTGCTCCTATCAACCCTTCTGATATTAATCGAATTGAAGGGGTGTACCCTGTGAGGCCACAAGTTCCAGCAGTTGGAGGATATGAAGGCGTAGGAGAGGTACAATCAGTCGGGTCTGCGGTTAAAGGTCTCTCGCCTGGCGATTTGGTCATCCCATCTCCGCCTTCTTTCGGGACATGGCAGACTTATATTGTGAAAGATCAGAGTGTATGGCATAAGATCAATAAAGATTCACCCTTGGAATATGCTGCCACTGTTACGGTTAATCCTTTGACTGCTCTAAGAATGCTAGAAGAATTCACCACTTTAAAGAAAGGAGATGCTATTGTTCAAAATGGAGCTACAAGCATCGTGGGGCAGTGCATTATTCAGCTTGCACAGCATCGTGGTATCCATAACATTAACATAATAAGGGACAGGGCTGGATCCGATGAAGTAAAAGAAAAACTCAAAAACCTTGGTGCTGATGAAATGTTTACAGAGAGTCAGCTGGAAGTTAAGAATGTCAAGGGTCTTCTGGGTGGTATACCTGAACCTTCATTGGGATTCAACTGTGTTGGAGGCAATGCTGCTTCTCTGGTTCTTAAGTTTTTGGGGCGTGGTGGAACTATGGTAACATATGGTGGAATGTCTAAGAAACCTATTACTGTATCAACTTCATCTTTTATTTTTAAGGATCTTTCCTTGAGGGGATTCTGGTTGCAGAAATGGATGAGTACAGAAAAGGCATTTGAGTGTAGAGTTTTGATAGATCACCTCCTCGACCTAGCACGGGAAGGGAAGTTAAAATACGAAATGGAGCTGGTTCCTTTTGACAAATTCAGTGCTGCACTCGACAACGCGCTTGGGAAACAAGGAAGCCAACCGAAACAAGTTATCAATTTTCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009536 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 map00062 map01100 map01212

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

378

Amino Acids

41.07

Weight (kDa)

8.94

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	72 - 131	7.2e-12	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	198 - 324	2.1e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45770 AT3G45770
fragaria_vesca	FvH4_3g34120
malus_domestica	MD03G1107400.v1.1
prunus_persica	Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1
pyrus_communis	pycom03g08690
rosa_chinensis	RchiOBHm_Chr5g0061771
rosa_laevigata	RLG00000035504
rosa_multiflora	Rmu_sc0003709.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018960
rosa_rugosa	Rorug05G0343400 Rorug05G0343500 Rorug05G0343600
rosa_samantha	Rh5AG404500 Rh5BG417600 Rh5CG442000 Rh5DG431700
rosa_wichuraiana	Rw5G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	2 cut(s)	147, 766
AccII	CGCG	1 cut(s)	1082
AciI	CCGC	7 cut(s)	79, 103, 128, 140, 197, 359, 401
AclWI	GGATC	3 cut(s)	660, 673, 924
AcsI	RAATTY	2 cut(s)	536, 1058
AcyI	GRCGYC	2 cut(s)	5, 69
AfaI	GTAC	3 cut(s)	287, 342, 958
AfiI	CCNNNNNNNGG	4 cut(s)	314, 410, 782, 1012
AflII	CTTAAG	1 cut(s)	824
AgsI	TTSAA	4 cut(s)	206, 278, 572, 790
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	6 cut(s)	23, 581, 613, 730, 1042, 1129
AluI	AGCT	6 cut(s)	23, 581, 613, 730, 1042, 1129
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	12, 374
AlwI	GGATC	3 cut(s)	660, 673, 924
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	4 cut(s)	242, 488, 809, 1067
ApoI	RAATTY	2 cut(s)	536, 1058
AseI	ATTAAT	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	1084
AspS9I	GGNCC	2 cut(s)	84, 161
AsuHPI	GGTGA	5 cut(s)	49, 169, 465, 532, 986
AvaII	GGWCC	2 cut(s)	84, 161
BamHI	GGATCC	1 cut(s)	665
BarI	GAAGNNNNNNTAC	2 cut(s)	1013, 1045
BbsI	GAAGAC	1 cut(s)	746
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	229, 475, 796, 1054
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	2 cut(s)	56, 115
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	1 cut(s)	641
BcoDI	GTCTC	2 cut(s)	12, 374
BfaI	CTAG	2 cut(s)	530, 1007
BfrI	CTTAAG	1 cut(s)	824
BfuI	GTATCC	1 cut(s)	641
BisI	GCNGC	5 cut(s)	128, 243, 489, 810, 1068
BlsI	GCNGC	5 cut(s)	129, 244, 490, 811, 1069
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	84, 161
BmgT120I	GGNCC	2 cut(s)	84, 161
BmiI	GGNNCC	3 cut(s)	86, 667, 1047
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	3 cut(s)	550, 597, 631
BpiI	GAAGAC	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	946
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	5, 69
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	477, 697
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 410, 782, 1012
Bse118I	RCCGGY	2 cut(s)	81, 199
Bse3DI	GCAATG	2 cut(s)	58, 811
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	477, 697
BseGI	GGATG	2 cut(s)	390, 957
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	4 cut(s)	314, 410, 782, 1012
BseMI	GCAATG	2 cut(s)	58, 811
BseMII	CTCAG	2 cut(s)	43, 86
BseRI	GAGGAG	1 cut(s)	989
BseXI	GCAGC	4 cut(s)	229, 475, 796, 1054
BsgI	GTGCAG	1 cut(s)	1053
Bsh1236I	CGCG	1 cut(s)	1082
BshFI	GGCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	82, 200
BslFI	GGGAC	3 cut(s)	70, 427, 668
BslI	CCNNNNNNNGG	4 cut(s)	314, 410, 782, 1012
BsmAI	GTCTC	2 cut(s)	12, 374
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	3 cut(s)	70, 427, 668
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	6 cut(s)	17, 439, 459, 665, 916, 991
BspACI	CCGC	7 cut(s)	79, 103, 128, 140, 197, 359, 401
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	2 cut(s)	42, 87
BspFNI	CGCG	1 cut(s)	1082
BspLI	GGNNCC	3 cut(s)	86, 667, 1047
BspPI	GGATC	3 cut(s)	660, 673, 924
BspTI	CTTAAG	1 cut(s)	824
BspTNI	GGTCTC	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	58, 811
BsrFI	RCCGGY	2 cut(s)	81, 199
BssAI	RCCGGY	2 cut(s)	81, 199
BssECI	CCNNGG	2 cut(s)	477, 697
BssMI	GATC	6 cut(s)	17, 439, 459, 665, 916, 991
BssNAI	GTATAC	2 cut(s)	148, 767
BssNI	GRCGYC	2 cut(s)	5, 69
BssT1I	CCWWGG	2 cut(s)	477, 697
Bst1107I	GTATAC	2 cut(s)	148, 767
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	5 cut(s)	161, 496, 502, 794, 889
BstACI	GRCGYC	2 cut(s)	5, 69
BstAFI	CTTAAG	1 cut(s)	824
BstC8I	GCNNGC	3 cut(s)	101, 105, 615
BstDEI	CTNAG	5 cut(s)	29, 95, 135, 521, 873
BstEII	GGTNACC	1 cut(s)	175
BstF5I	GGATG	2 cut(s)	390, 957
BstFNI	CGCG	1 cut(s)	1082
BstHHI	GCGC	1 cut(s)	1084
BstKTI	GATC	6 cut(s)	20, 442, 462, 668, 919, 994
BstMAI	GTCTC	2 cut(s)	12, 374
BstMBI	GATC	6 cut(s)	17, 439, 459, 665, 916, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNI	CCWGG	1 cut(s)	378
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	376
BstUI	CGCG	1 cut(s)	1082
BstV1I	GCAGC	4 cut(s)	229, 475, 796, 1054
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	2 cut(s)	665, 916
BstYI	RGATCY	2 cut(s)	665, 916
BstZ17I	GTATAC	2 cut(s)	148, 767
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	390, 957
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	4 cut(s)	35, 492, 605, 1069
Cac8I	GCNNGC	3 cut(s)	101, 105, 615
CfoI	GCGC	1 cut(s)	1084
Cfr10I	RCCGGY	2 cut(s)	81, 199
Cfr13I	GGNCC	2 cut(s)	84, 161
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	286, 341, 957
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	1 cut(s)	417
CviQI	GTAC	3 cut(s)	286, 341, 957
DdeI	CTNAG	5 cut(s)	29, 95, 135, 521, 873
DpnI	GATC	6 cut(s)	19, 441, 461, 667, 918, 993
DpnII	GATC	6 cut(s)	17, 439, 459, 665, 916, 991
DraI	TTTAAA	1 cut(s)	549
EciI	GGCGGA	2 cut(s)	68, 390
Eco130I	CCWWGG	2 cut(s)	477, 697
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	2 cut(s)	84, 161
Eco91I	GGTNACC	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	477, 697
ErhI	CCWWGG	2 cut(s)	477, 697
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	420
FaqI	GGGAC	3 cut(s)	70, 427, 668
FatI	CATG	1 cut(s)	416
FauI	CCCGC	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	859
FblI	GTMKAC	2 cut(s)	147, 766
Fnu4HI	GCNGC	5 cut(s)	128, 243, 489, 810, 1068
FokI	GGATG	2 cut(s)	377, 964
Fsp4HI	GCNGC	5 cut(s)	128, 243, 489, 810, 1068
FspBI	CTAG	2 cut(s)	530, 1007
GlaI	GCGC	1 cut(s)	1083
GluI	GCNGC	5 cut(s)	128, 243, 489, 810, 1068
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	2 cut(s)	82, 200
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	1084
Hin1I	GRCGYC	2 cut(s)	5, 69
Hin1II	CATG	1 cut(s)	420
Hin6I	GCGC	1 cut(s)	1082
HinP1I	GCGC	1 cut(s)	1082
HinfI	GANTC	4 cut(s)	470, 724, 786, 933
HpaII	CCGG	2 cut(s)	82, 200
HphI	GGTGA	5 cut(s)	49, 169, 465, 532, 986
Hpy166II	GTNNAC	4 cut(s)	148, 286, 717, 767
Hpy188I	TCNGA	4 cut(s)	32, 262, 444, 670
Hpy188III	TCNNGA	2 cut(s)	167, 412
Hpy8I	GTNNAC	4 cut(s)	148, 286, 717, 767
HpyAV	CCTTC	7 cut(s)	205, 267, 272, 320, 414, 786, 1010
HpyCH4III	ACNGT	5 cut(s)	161, 496, 502, 794, 889
HpyCH4V	TGCA	5 cut(s)	51, 603, 617, 943, 1070
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	5 cut(s)	29, 95, 135, 521, 873
Hsp92I	GRCGYC	2 cut(s)	5, 69
Hsp92II	CATG	1 cut(s)	420
HspAI	GCGC	1 cut(s)	1082
Kzo9I	GATC	6 cut(s)	17, 439, 459, 665, 916, 991
LmnI	GCTCC	3 cut(s)	250, 578, 1039
Lsp1109I	GCAGC	4 cut(s)	229, 475, 796, 1054
LweI	GCATC	3 cut(s)	550, 597, 631
MaeI	CTAG	2 cut(s)	530, 1007
MaeIII	GTNAC	4 cut(s)	55, 175, 496, 853
MalI	GATC	6 cut(s)	19, 441, 461, 667, 918, 993
MboI	GATC	6 cut(s)	17, 439, 459, 665, 916, 991
MboII	GAAGA	2 cut(s)	545, 746
MflI	RGATCY	2 cut(s)	665, 916
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	5 cut(s)	191, 273, 536, 1058, 1120
MlyI	GAGTC	1 cut(s)	733
MmeI	TCCRAC	2 cut(s)	295, 778
MnlI	CCTC	9 cut(s)	86, 174, 288, 311, 331, 794, 921, 1007, 1010
MslI	CAYNNNNRTG	2 cut(s)	182, 973
MspA1I	CMGCKG	1 cut(s)	730
MspCI	CTTAAG	1 cut(s)	824
MspI	CCGG	2 cut(s)	82, 200
MspR9I	CCNGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	1 cut(s)	619
NdeI	CATATG	1 cut(s)	859
NdeII	GATC	6 cut(s)	17, 439, 459, 665, 916, 991
NlaIII	CATG	1 cut(s)	420
NlaIV	GGNNCC	3 cut(s)	86, 667, 1047
NmuCI	GTSAC	2 cut(s)	55, 175
OliI	CACNNNNGTG	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	470, 786, 933
PflFI	GACNNNGTC	2 cut(s)	71, 173
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	5 cut(s)	129, 244, 490, 811, 1069
PleI	GAGTC	1 cut(s)	732
PpsI	GAGTC	1 cut(s)	732
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	376
PspEI	GGTNACC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	86, 667, 1047
PspPI	GGNCC	2 cut(s)	84, 161
PsuI	RGATCY	2 cut(s)	665, 916
PsyI	GACNNNGTC	2 cut(s)	71, 173
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	3 cut(s)	287, 342, 958
RsaNI	GTAC	3 cut(s)	286, 341, 957
RseI	CAYNNNNRTG	2 cut(s)	182, 973
SatI	GCNGC	5 cut(s)	128, 243, 489, 810, 1068
Sau3AI	GATC	6 cut(s)	17, 439, 459, 665, 916, 991
Sau96I	GGNCC	2 cut(s)	84, 161
SchI	GAGTC	1 cut(s)	733
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	3 cut(s)	550, 597, 631
SinI	GGWCC	2 cut(s)	84, 161
SmiMI	CAYNNNNRTG	2 cut(s)	182, 973
SmlI	CTYRAG	2 cut(s)	824, 925
SmoI	CTYRAG	2 cut(s)	824, 925
Sse9I	AATT	5 cut(s)	191, 273, 536, 1058, 1120
SsiI	CCGC	7 cut(s)	79, 103, 128, 140, 197, 359, 401
SspMI	CTAG	2 cut(s)	530, 1007
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	477, 697
TaaI	ACNGT	5 cut(s)	161, 496, 502, 794, 889
TaqI	TCGA	4 cut(s)	16, 271, 1002, 1074
TasI	AATT	5 cut(s)	191, 273, 536, 1058, 1120
TatI	WGTACW	1 cut(s)	956
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	470, 786, 933
TscAI	CASTG	4 cut(s)	42, 499, 605, 1069
TseFI	GTSAC	2 cut(s)	55, 175
TseI	GCWGC	4 cut(s)	242, 488, 809, 1067
Tsp45I	GTSAC	2 cut(s)	55, 175
TspDTI	ATGAA	5 cut(s)	339, 687, 723, 768, 888
TspRI	CASTG	4 cut(s)	42, 499, 605, 1069
Tth111I	GACNNNGTC	2 cut(s)	71, 173
Van91I	CCANNNNNTGG	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	84, 161
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	2 cut(s)	536, 1058
XmiI	GTMKAC	2 cut(s)	147, 766
XspI	CTAG	2 cut(s)	530, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.