Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011303

Physical Location & Seq

Genomic Coordinates Reverse (-)

67712790 .. 67715549

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG417600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCGTCGTCGGTTCGATCACCGGCTCTCAGAGCTCTGAAACCACTCTTCAATTTCACACTCCACGACACCTTAAACCCTAGACCCCGAACCCTAAGCCTTCGGGCCTTCTCCACCGCCTTGTCTCCGCCGTCTAAGGCGGTGGTCTACGAGCAACACGGCCCTCCCGATAGCGTTACCAGAGTGATGAATTTACCGCCGGTTGAAGTGAAAGAGAACGATGTCTGTGTCAAAATGCTGGCTTCTCCTATAAACCCTTCTGATATTAACAGGATTGAAGGGGTATACCCTGTGAGGCCACAAGTGCCAGCGGTTGGAGGATATGAAGGTGTGGGAGAGGTACACTCTGTCGGCTCTGCGGTTAAAGGACTATCGCCTGGTGATTTGGTCATCCCATCTCCACCTTCTTCCGGGATGTGGCAAACTTATGTTGTGAAAGATCAGAGTGTATGGTACAAGATTAATAAAGATTCACCCTTGGAATATGCTGCTACCATTACTGTAAATCCATTGACTGCTCTAAGAATGCTTGAAGACTTCACCACTTTAAAGTCAGGAGATGCTGTTGTTCAAAATGGAGCCACCAGCATCGTGGGGCAGTGCATTATTCAGCTTGCAAAGAATCGTGGCATTCACAGCGTTAATATTATAAGAGACAGGGCTGGGTCAGATGAAGTCAAGGAAAAGCTTAAAAAACTTGGTGCTGATGAAGTTTTTACTGAGAGCGAACTGCAAGTCAAGGATGTCAAGGGTCTTCTGGCTGGCCTACCCGAGCCTGCATTGGGATTTAACTGCGTCGGCGGCAATGCTGCTTCTTTGGTTCTTAGATTTTTGGGGCGTGGCGGCACTATGGTGACTTATGGTGGCATGTCTAAGAAACCAATTACTGTATCAACTTCATATTTCATTTTTAAGGATCTTTCCTTGAGGGGATTCTGGTTGCAGAGTTGGATGAGTACAGAGAAGGCAGCAGAGTGTAGAGTTCTGATAGATCACCTCCTTGACCTAGCACGGGAAGGGAAATTAAAATATGAGATGGAGCTGGTTCCTTTCGACAGTTTCCACAATGCACTAGACAAAGCACTCGGGAAACAAGGGAGCCAACCGAAGCAAGTAATCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009536 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 map00062 map01100 map01212

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

375

Amino Acids

40.79

Weight (kDa)

8.98

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	72 - 132	7.1e-12	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	198 - 324	3.9e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45770 AT3G45770
fragaria_vesca	FvH4_3g34120
malus_domestica	MD03G1107400.v1.1
prunus_persica	Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1 Prupe.6G090200_v2.0.a1
pyrus_communis	pycom03g08690
rosa_chinensis	RchiOBHm_Chr5g0061771
rosa_laevigata	RLG00000035504
rosa_multiflora	Rmu_sc0003709.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018960
rosa_rugosa	Rorug05G0343400 Rorug05G0343500 Rorug05G0343600
rosa_samantha	Rh5AG404500 Rh5BG417600 Rh5CG442000 Rh5DG431700
rosa_wichuraiana	Rw5G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	2 cut(s)	147, 285
AciI	CCGC	8 cut(s)	117, 128, 140, 197, 311, 359, 801, 843
AclWI	GGATC	1 cut(s)	924
AcsI	RAATTY	2 cut(s)	190, 1121
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	342, 455, 958
AfiI	CCNNNNNNNGG	5 cut(s)	314, 410, 417, 782, 1012
AgsI	TTSAA	5 cut(s)	52, 206, 278, 533, 572
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	851
AluBI	AGCT	4 cut(s)	35, 613, 688, 1042
AluI	AGCT	4 cut(s)	35, 613, 688, 1042
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	129, 648
AlwI	GGATC	1 cut(s)	924
Ama87I	CYCGRG	2 cut(s)	770, 1085
AoxI	GGCC	4 cut(s)	105, 160, 296, 763
ApeKI	GCWGC	3 cut(s)	488, 809, 968
ApoI	RAATTY	2 cut(s)	190, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	720, 752
AseI	ATTAAT	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	105, 161
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	6 cut(s)	12, 392, 465, 532, 865, 986
AvaI	CYCGRG	2 cut(s)	770, 1085
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	540, 746
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	475, 796, 980
BccI	CCATC	2 cut(s)	403, 1030
BceAI	ACGGC	2 cut(s)	115, 175
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	129, 648
BfaI	CTAG	3 cut(s)	81, 1007, 1073
BisI	GCNGC	5 cut(s)	489, 802, 810, 844, 969
BlsI	GCNGC	5 cut(s)	490, 803, 811, 845, 970
Bme1390I	CCNGG	2 cut(s)	378, 412
BmeT110I	CYCGRG	2 cut(s)	770, 1085
BmgT120I	GGNCC	2 cut(s)	105, 161
BmiI	GGNNCC	3 cut(s)	580, 1047, 1100
BmrFI	CCNGG	2 cut(s)	378, 412
BmsI	GCATC	2 cut(s)	550, 597
BpiI	GAAGAC	2 cut(s)	540, 746
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	946
BpuMI	CCSGG	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	5 cut(s)	314, 410, 417, 782, 1012
Bse118I	RCCGGY	2 cut(s)	22, 199
Bse3DI	GCAATG	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	4 cut(s)	390, 420, 748, 957
BseLI	CCNNNNNNNGG	5 cut(s)	314, 410, 417, 782, 1012
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	2 cut(s)	43, 711
BseXI	GCAGC	3 cut(s)	475, 796, 980
BseYI	CCCAGC	1 cut(s)	662
BshFI	GGCC	4 cut(s)	107, 162, 298, 765
BsiHKAI	GWGCWC	1 cut(s)	37
BsiHKCI	CYCGRG	2 cut(s)	770, 1085
BsiSI	CCGG	3 cut(s)	23, 200, 411
BslI	CCNNNNNNNGG	5 cut(s)	314, 410, 417, 782, 1012
BsmAI	GTCTC	2 cut(s)	129, 648
BsmI	GAATGC	2 cut(s)	531, 630
BsnI	GGCC	4 cut(s)	107, 162, 298, 765
BsoBI	CYCGRG	2 cut(s)	770, 1085
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	17, 439, 916, 991
BspACI	CCGC	8 cut(s)	117, 128, 140, 197, 311, 359, 801, 843
BspANI	GGCC	4 cut(s)	107, 162, 298, 765
BspCNI	CTCAG	2 cut(s)	42, 712
BspLI	GGNNCC	3 cut(s)	580, 1047, 1100
BspPI	GGATC	1 cut(s)	924
BsrDI	GCAATG	1 cut(s)	811
BsrFI	RCCGGY	2 cut(s)	22, 199
BssAI	RCCGGY	2 cut(s)	22, 199
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	4 cut(s)	17, 439, 916, 991
BssNAI	GTATAC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	502, 889, 1058
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	5 cut(s)	240, 309, 615, 763, 777
BstDEI	CTNAG	7 cut(s)	29, 95, 135, 521, 720, 824, 873
BstF5I	GGATG	4 cut(s)	390, 420, 748, 957
BstKTI	GATC	4 cut(s)	20, 442, 919, 994
BstMAI	GTCTC	2 cut(s)	129, 648
BstMBI	GATC	4 cut(s)	17, 439, 916, 991
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 304, 636, 801
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	871
BstSCI	CCNGG	2 cut(s)	376, 410
BstV1I	GCAGC	3 cut(s)	475, 796, 980
BstV2I	GAAGAC	2 cut(s)	540, 746
BstX2I	RGATCY	1 cut(s)	916
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	916
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	107, 162, 298, 765
BtsCI	GGATG	4 cut(s)	390, 420, 748, 957
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	5 cut(s)	240, 309, 615, 763, 777
Cfr10I	RCCGGY	2 cut(s)	22, 199
Cfr13I	GGNCC	2 cut(s)	105, 161
CseI	GACGC	1 cut(s)	784
Csp6I	GTAC	3 cut(s)	341, 454, 957
CviAII	CATG	1 cut(s)	868
CviQI	GTAC	3 cut(s)	341, 454, 957
DdeI	CTNAG	7 cut(s)	29, 95, 135, 521, 720, 824, 873
DpnI	GATC	4 cut(s)	19, 441, 918, 993
DpnII	GATC	4 cut(s)	17, 439, 916, 991
DraI	TTTAAA	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	35
Eco88I	CYCGRG	2 cut(s)	770, 1085
EcoICRI	GAGCTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	1 cut(s)	871
FatI	CATG	1 cut(s)	867
FblI	GTMKAC	2 cut(s)	147, 285
Fnu4HI	GCNGC	5 cut(s)	489, 802, 810, 844, 969
FokI	GGATG	4 cut(s)	377, 427, 755, 964
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	5 cut(s)	489, 802, 810, 844, 969
FspBI	CTAG	3 cut(s)	81, 1007, 1073
GluI	GCNGC	5 cut(s)	489, 802, 810, 844, 969
GsaI	CCCAGC	1 cut(s)	666
HaeIII	GGCC	4 cut(s)	107, 162, 298, 765
HapII	CCGG	3 cut(s)	23, 200, 411
HgaI	GACGC	1 cut(s)	784
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	871
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	3 cut(s)	470, 622, 933
HpaII	CCGG	3 cut(s)	23, 200, 411
HphI	GGTGA	6 cut(s)	12, 392, 465, 532, 865, 986
Hpy166II	GTNNAC	3 cut(s)	148, 286, 343
Hpy188I	TCNGA	7 cut(s)	32, 39, 262, 444, 670, 987, 1127
Hpy188III	TCNNGA	3 cut(s)	167, 555, 1087
Hpy8I	GTNNAC	3 cut(s)	148, 286, 343
Hpy99I	CGWCG	3 cut(s)	10, 13, 800
HpyAV	CCTTC	8 cut(s)	110, 118, 267, 272, 320, 414, 958, 1010
HpyCH4III	ACNGT	3 cut(s)	502, 889, 1058
HpyCH4V	TGCA	6 cut(s)	603, 617, 733, 779, 943, 1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 304, 636, 801
HpyF3I	CTNAG	7 cut(s)	29, 95, 135, 521, 720, 824, 873
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	871
Kzo9I	GATC	4 cut(s)	17, 439, 916, 991
LmnI	GCTCC	3 cut(s)	578, 1039, 1098
Lsp1109I	GCAGC	3 cut(s)	475, 796, 980
LweI	GCATC	2 cut(s)	550, 597
MaeI	CTAG	3 cut(s)	81, 1007, 1073
MaeIII	GTNAC	2 cut(s)	175, 853
MalI	GATC	4 cut(s)	19, 441, 918, 993
MboI	GATC	4 cut(s)	17, 439, 916, 991
MboII	GAAGA	4 cut(s)	40, 399, 545, 746
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	5 cut(s)	52, 190, 882, 1022, 1121
MmeI	TCCRAC	2 cut(s)	295, 929
MnlI	CCTC	6 cut(s)	174, 288, 311, 331, 921, 1007
MslI	CAYNNNNRTG	1 cut(s)	851
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	3 cut(s)	23, 200, 411
MspR9I	CCNGG	2 cut(s)	378, 412
Mva1269I	GAATGC	2 cut(s)	531, 630
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	32, 304, 636, 801
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	4 cut(s)	17, 439, 916, 991
NlaIII	CATG	1 cut(s)	871
NlaIV	GGNNCC	3 cut(s)	580, 1047, 1100
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	1 cut(s)	871
OliI	CACNNNNGTG	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	2 cut(s)	531, 630
PfeI	GAWTC	3 cut(s)	470, 622, 933
PflMI	CCANNNNNTGG	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	490, 803, 811, 845, 970
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	580, 1047, 1100
PspPI	GGNCC	2 cut(s)	105, 161
PsuI	RGATCY	1 cut(s)	916
RsaI	GTAC	3 cut(s)	342, 455, 958
RsaNI	GTAC	3 cut(s)	341, 454, 957
RseI	CAYNNNNRTG	1 cut(s)	851
SacI	GAGCTC	1 cut(s)	37
SatI	GCNGC	5 cut(s)	489, 802, 810, 844, 969
Sau3AI	GATC	4 cut(s)	17, 439, 916, 991
Sau96I	GGNCC	2 cut(s)	105, 161
ScrFI	CCNGG	2 cut(s)	378, 412
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	2 cut(s)	550, 597
SmiMI	CAYNNNNRTG	1 cut(s)	851
SmlI	CTYRAG	1 cut(s)	925
SmoI	CTYRAG	1 cut(s)	925
Sse9I	AATT	5 cut(s)	52, 190, 882, 1022, 1121
SsiI	CCGC	8 cut(s)	117, 128, 140, 197, 311, 359, 801, 843
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	3 cut(s)	81, 1007, 1073
SstI	GAGCTC	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	376, 410
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	502, 889, 1058
TaqI	TCGA	2 cut(s)	16, 1053
TasI	AATT	5 cut(s)	52, 190, 882, 1022, 1121
TatI	WGTACW	1 cut(s)	956
TauI	GCSGC	2 cut(s)	804, 846
TfiI	GAWTC	3 cut(s)	470, 622, 933
TscAI	CASTG	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	3 cut(s)	488, 809, 968
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	6 cut(s)	203, 339, 687, 723, 888, 895
TspRI	CASTG	1 cut(s)	605
Van91I	CCANNNNNTGG	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	2 cut(s)	190, 1121
XceI	RCATGY	1 cut(s)	871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	2 cut(s)	147, 285
XspI	CTAG	3 cut(s)	81, 1007, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.