Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005737

Physical Location & Seq

Genomic Coordinates Reverse (-)

16976631 .. 16978923

Gene Structure 2293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGATTGATAGAGAAGATGGAAGAACACCAAATCAGCTGAGACCTCTTGCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGTTGGTCACAAGGGGATACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAAAAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAGCCTAAATCCGGGCAGATTGGAAAAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGTGTTTTGACTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGATGGTTCTCTTCTACCATGTGCGATAAATGCAGCATGTGCAGCGCTTGTCGATGCAGGAATCCCTATGAAGCATCTGGCTGTTGCTATATGCTGTTGCCTGGCTGAGAATGGATATCTCGTACTCGATCCAAACAAGCTTGAAGAAAAGAAAATGACGGCCTTTGCTTATTTAGTCTTTCCAAATACAACTCTCTCTGTTCTTCCGGAAGGGTCATCAGTAGCGGAAGGCGAGCCAGTAGAGCATGGGATCATCACATCAATTACACATGGAGTAATGTCAGTGGACGATTATTTCCTGTGTGTAGAGAACGGCCGTGCTGCTACGGCTAGTTTATCTGCATTTTTTAGAAAGAACTTCCAACAAAGTTCATCCAAGGCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004536 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0042802 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH

Protein Analysis

239

Amino Acids

25.81

Weight (kDa)

6.59

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	13 - 133	1.1e-26	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210
fragaria_vesca	FvH4_2g35660 FvH4_2g35660 FvH4_2g35660
malus_domestica	MD01G1039900.v1.1 MD15G1311800.v1.1
prunus_persica	Prupe.1G449000_v2.0.a1 Prupe.1G449000_v2.0.a1
pyrus_communis	pycom01g06770 pycom15g27540
rosa_chinensis	RchiOBHm_Chr6g0305271 RchiOBHm_Chr6g0306141
rosa_laevigata	RLG00000010820
rosa_multiflora	Rmu_sc0003594.1_g000013 Rmu_ssc0000276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00162010
rosa_rugosa	Rorug06G0347100
rosa_samantha	Rh6AG459600 Rh6BG441400 Rh6DG460300
rosa_wichuraiana	Rw6G039290 Rw6G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	2 cut(s)	128, 557
AclWI	GGATC	2 cut(s)	455, 590
AcoI	YGGCCR	1 cut(s)	646
AfaI	GTAC	1 cut(s)	456
AfeI	AGCGCT	1 cut(s)	378
AfiI	CCNNNNNNNGG	3 cut(s)	146, 209, 714
AgsI	TTSAA	4 cut(s)	188, 230, 253, 476
AjnI	CCWGG	1 cut(s)	432
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	3 cut(s)	40, 125, 472
AluI	AGCT	3 cut(s)	40, 125, 472
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	455, 590
Aor13HI	TCCGGA	1 cut(s)	538
Aor51HI	AGCGCT	1 cut(s)	378
AoxI	GGCC	2 cut(s)	492, 646
ApeKI	GCWGC	4 cut(s)	125, 365, 374, 653
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BbvI	GCAGC	4 cut(s)	112, 377, 386, 640
BccI	CCATC	2 cut(s)	14, 329
BceAI	ACGGC	4 cut(s)	507, 633, 661, 675
BciT130I	CCWGG	1 cut(s)	434
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	3 cut(s)	93, 122, 663
BfoI	RGCGCY	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	126, 366, 375, 654
BlsI	GCNGC	4 cut(s)	127, 367, 376, 655
Bme1390I	CCNGG	2 cut(s)	211, 434
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	211, 434
BmsI	GCATC	2 cut(s)	376, 415
BpuMI	CCSGG	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 209, 714
Bse1I	ACTGG	1 cut(s)	569
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	1 cut(s)	704
BseLI	CCNNNNNNNGG	3 cut(s)	146, 209, 714
BseMII	CTCAG	4 cut(s)	32, 162, 321, 429
BseNI	ACTGG	1 cut(s)	569
BseX3I	CGGCCG	1 cut(s)	646
BseXI	GCAGC	4 cut(s)	112, 377, 386, 640
BseYI	CCCAGC	1 cut(s)	713
BsgI	GTGCAG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	649
BshFI	GGCC	2 cut(s)	494, 648
BsiEI	CGRYCG	1 cut(s)	649
BsiSI	CCGG	2 cut(s)	210, 539
BslI	CCNNNNNNNGG	3 cut(s)	146, 209, 714
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	494, 648
Bso31I	GGTCTC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	460, 582
BspACI	CCGC	2 cut(s)	128, 557
BspANI	GGCC	2 cut(s)	494, 648
BspCNI	CTCAG	4 cut(s)	33, 163, 320, 430
BspEI	TCCGGA	1 cut(s)	538
BspPI	GGATC	2 cut(s)	455, 590
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	2 cut(s)	460, 582
BssT1I	CCWWGG	1 cut(s)	708
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	4 cut(s)	41, 171, 307, 438
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	704
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	2 cut(s)	463, 585
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	460, 582
BstMCI	CGRYCG	1 cut(s)	649
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 362, 371, 374, 574, 659
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	209, 432
BstV1I	GCAGC	4 cut(s)	112, 377, 386, 640
BstZI	CGGCCG	1 cut(s)	646
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	494, 648
BtsCI	GGATG	1 cut(s)	704
BtsIMutI	CAGTG	2 cut(s)	315, 621
Cac8I	GCNNGC	1 cut(s)	566
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	6 cut(s)	83, 329, 351, 369, 578, 602
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	4 cut(s)	41, 171, 307, 438
DpnI	GATC	2 cut(s)	462, 584
DpnII	GATC	2 cut(s)	460, 582
EaeI	YGGCCR	1 cut(s)	646
EagI	CGGCCG	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EclXI	CGGCCG	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	708
Eco31I	GGTCTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	137
Eco47III	AGCGCT	1 cut(s)	378
Eco52I	CGGCCG	1 cut(s)	646
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	708
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	6 cut(s)	86, 332, 354, 372, 581, 605
FatI	CATG	6 cut(s)	82, 328, 350, 368, 577, 601
FauNDI	CATATG	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	126, 366, 375, 654
FokI	GGATG	1 cut(s)	691
Fsp4HI	GCNGC	4 cut(s)	126, 366, 375, 654
FspBI	CTAG	3 cut(s)	93, 122, 663
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	4 cut(s)	126, 366, 375, 654
GsaI	CCCAGC	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	494, 648
HapII	CCGG	2 cut(s)	210, 539
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	6 cut(s)	86, 332, 354, 372, 581, 605
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	393
HpaII	CCGG	2 cut(s)	210, 539
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	1 cut(s)	619
HpyAV	CCTTC	4 cut(s)	80, 169, 536, 554
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	5 cut(s)	328, 365, 374, 389, 674
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 362, 371, 374, 574, 659
HpyF3I	CTNAG	4 cut(s)	41, 171, 307, 438
Hsp92II	CATG	6 cut(s)	86, 332, 354, 372, 581, 605
HspAI	GCGC	1 cut(s)	377
Kpn2I	TCCGGA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	460, 582
Lsp1109I	GCAGC	4 cut(s)	112, 377, 386, 640
LweI	GCATC	2 cut(s)	376, 415
MaeI	CTAG	3 cut(s)	93, 122, 663
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	2 cut(s)	462, 584
MboI	GATC	2 cut(s)	460, 582
MboII	GAAGA	5 cut(s)	29, 36, 335, 488, 527
MluCI	AATT	2 cut(s)	315, 594
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	3 cut(s)	57, 90, 316
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	2 cut(s)	308, 333
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	2 cut(s)	210, 539
MspR9I	CCNGG	2 cut(s)	211, 434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	6 cut(s)	176, 362, 371, 374, 574, 659
NciI	CCSGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	194
NdeII	GATC	2 cut(s)	460, 582
NlaIII	CATG	6 cut(s)	86, 332, 354, 372, 581, 605
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	372
OliI	CACNNNNGTG	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	393
PkrI	GCNGC	4 cut(s)	127, 367, 376, 655
Psp6I	CCWGG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
RseI	CAYNNNNRTG	2 cut(s)	308, 333
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	4 cut(s)	126, 366, 375, 654
Sau3AI	GATC	2 cut(s)	460, 582
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	211, 434
SetI	ASST	7 cut(s)	42, 49, 127, 142, 308, 324, 474
SfaNI	GCATC	2 cut(s)	376, 415
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	308, 333
Sse9I	AATT	2 cut(s)	315, 594
SsiI	CCGC	2 cut(s)	128, 557
SspMI	CTAG	3 cut(s)	93, 122, 663
StyD4I	CCNGG	2 cut(s)	209, 432
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	384, 459
TasI	AATT	2 cut(s)	315, 594
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	315, 621
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	4 cut(s)	125, 365, 374, 653
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	3 cut(s)	62, 416, 693
TspRI	CASTG	2 cut(s)	315, 621
VpaK11BI	GGWCC	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	144
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	3 cut(s)	93, 122, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.