Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005737

Physical Location & Seq

Genomic Coordinates Forward (+)

31417651 .. 31420821

Gene Structure 3171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1311800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAATTGACAGAGTCGACGGACGCACGCCAAACCAGTTGAGACCATTGGCTTGTTCTCGCGGCTTCCTCAACCGCGCTCACGGCTCTGCAAGTTGGACTCAAGGAGATACGAAAGTTCTGGCTGCAGTTTATGGGCCTAAAGCAGGAACAAAGAAGAATGAAAATCCCGAAAAAGCTTGCATTGAGGTTGTTTGGAAACCTAAAACAGGCCTGAGTGGAAAATTGGAGAGGGAATACGAGATGATATTGAAGAGAACCTTGCAAAGCATCTGCATACTGACTCTAAACCCAAATACCACAACCTCGGTCATTGTTCAGGTTGTCAATGATGATGGTTCTCTTCTGCCATGTGCCATAAATGCAGCTTGTGCTGCCCTTGTTGATGCCGGGACTCCTCTAAAACATCTTGCTGTCGCTATATGTTGTTGCCTGGCAGAGAGCGGATACATCATATTGGACCCCAGCAAGCTGGAAGAGCAGAAAATGAAGGCGTTTGCGTATTTGGTCTTCCCAAACTCTCTCACAACCCTTCCAGAAGGAGGATTACTGGTGGGAGGTGAACCCATGGAGCATGGGATCATCACCTCAGTTACCCAGGGCGCAATGTCAGTGGACGACTATCTTCACAGTTTAGAACGAGGGTGCGCCGCCACTGCAAAGATGTCGGCATTTCTCCAAAAGAGATTGCAACCACTGCTTTCAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004536 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0042802 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH

Protein Analysis

238

Amino Acids

25.49

Weight (kDa)

6.43

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	13 - 133	1.4e-27	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210
fragaria_vesca	FvH4_2g35660 FvH4_2g35660 FvH4_2g35660
malus_domestica	MD01G1039900.v1.1 MD15G1311800.v1.1
prunus_persica	Prupe.1G449000_v2.0.a1 Prupe.1G449000_v2.0.a1
pyrus_communis	pycom01g06770 pycom15g27540
rosa_chinensis	RchiOBHm_Chr6g0305271 RchiOBHm_Chr6g0306141
rosa_laevigata	RLG00000010820
rosa_multiflora	Rmu_sc0003594.1_g000013 Rmu_ssc0000276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00162010
rosa_rugosa	Rorug06G0347100
rosa_samantha	Rh6AG459600 Rh6BG441400 Rh6DG460300
rosa_wichuraiana	Rw6G039290 Rw6G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	2 cut(s)	63, 78
AciI	CCGC	4 cut(s)	63, 76, 444, 651
AclWI	GGATC	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	146, 209, 542
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	432, 597
AluBI	AGCT	3 cut(s)	179, 368, 472
AluI	AGCT	3 cut(s)	179, 368, 472
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	587
AoxI	GGCC	2 cut(s)	137, 211
ApeKI	GCWGC	3 cut(s)	125, 365, 374
AspLEI	GCGC	3 cut(s)	80, 605, 650
AspS9I	GGNCC	2 cut(s)	137, 460
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	572, 577
AvaII	GGWCC	1 cut(s)	460
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BarI	GAAGNNNNNNTAC	4 cut(s)	494, 526, 531, 563
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	112, 361, 377
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	648, 682
BciT130I	CCWGG	2 cut(s)	434, 599
BciVI	GTATCC	1 cut(s)	440
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
BlsI	GCNGC	5 cut(s)	65, 127, 367, 376, 652
Bme1390I	CCNGG	3 cut(s)	391, 434, 599
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	137, 460
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	3 cut(s)	391, 434, 599
BmsI	GCATC	2 cut(s)	279, 376
BpiI	GAAGAC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	306, 567, 597, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 209, 542
Bse1I	ACTGG	2 cut(s)	37, 555
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	434, 599
BseDI	CCNNGG	4 cut(s)	306, 567, 597, 598
BseLI	CCNNNNNNNGG	3 cut(s)	146, 209, 542
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	206, 603
BseNI	ACTGG	2 cut(s)	37, 555
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	112, 361, 377
BseYI	CCCAGC	1 cut(s)	464
Bsh1236I	CGCG	2 cut(s)	63, 78
BshFI	GGCC	2 cut(s)	139, 213
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	3 cut(s)	146, 209, 542
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	2 cut(s)	139, 213
Bso31I	GGTCTC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	579
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	4 cut(s)	63, 76, 444, 651
BspANI	GGCC	2 cut(s)	139, 213
BspCNI	CTCAG	2 cut(s)	207, 602
BspFNI	CGCG	2 cut(s)	63, 78
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	1 cut(s)	587
BspQI	GCTCTTC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	37, 555
BssECI	CCNNGG	4 cut(s)	306, 567, 597, 598
BssMI	GATC	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	434, 599
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	3 cut(s)	248, 348, 471
BstAPI	GCANNNNNTGC	2 cut(s)	371, 697
BstC8I	GCNNGC	3 cut(s)	29, 181, 470
BstDEI	CTNAG	2 cut(s)	215, 589
BstDSI	CCRYGG	1 cut(s)	567
BstENI	CCTNNNNNAGG	2 cut(s)	144, 207
BstFNI	CGCG	2 cut(s)	63, 78
BstHHI	GCGC	3 cut(s)	80, 605, 650
BstKTI	GATC	1 cut(s)	582
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	579
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 656, 697
BstNI	CCWGG	2 cut(s)	434, 599
BstSCI	CCNGG	3 cut(s)	389, 432, 597
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	2 cut(s)	63, 78
BstV1I	GCAGC	3 cut(s)	112, 361, 377
BstV2I	GAAGAC	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	139, 213
BtgI	CCRYGG	1 cut(s)	567
BtsI	GCAGTG	2 cut(s)	654, 695
BtsIMutI	CAGTG	3 cut(s)	618, 654, 695
Cac8I	GCNNGC	3 cut(s)	29, 181, 470
CfoI	GCGC	3 cut(s)	80, 605, 650
Cfr13I	GGNCC	2 cut(s)	137, 460
CseI	GACGC	1 cut(s)	33
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	3 cut(s)	351, 568, 575
CviJI	RGCY	9 cut(s)	53, 66, 87, 125, 139, 179, 213, 368, 472
CviKI_1	RGCY	9 cut(s)	53, 66, 87, 125, 139, 179, 213, 368, 472
DdeI	CTNAG	2 cut(s)	215, 589
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
Eam1104I	CTCTTC	3 cut(s)	248, 348, 471
EarI	CTCTTC	3 cut(s)	248, 348, 471
Eco130I	CCWWGG	1 cut(s)	567
Eco147I	AGGCCT	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	460
EcoNI	CCTNNNNNAGG	2 cut(s)	144, 207
EcoRII	CCWGG	2 cut(s)	432, 597
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	3 cut(s)	354, 571, 578
FaiI	YATR	9 cut(s)	135, 278, 352, 359, 422, 424, 455, 569, 576
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	350, 567, 574
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
Fsp4HI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
GlaI	GCGC	3 cut(s)	79, 604, 649
GluI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	139, 213
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	3 cut(s)	80, 605, 650
Hin1II	CATG	3 cut(s)	354, 571, 578
Hin6I	GCGC	3 cut(s)	78, 603, 648
HinP1I	GCGC	3 cut(s)	78, 603, 648
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	4 cut(s)	15, 100, 283, 394
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	2 cut(s)	572, 577
Hpy166II	GTNNAC	3 cut(s)	19, 563, 616
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	2 cut(s)	170, 536
Hpy8I	GTNNAC	3 cut(s)	19, 563, 616
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	484, 533, 542
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4V	TGCA	8 cut(s)	92, 128, 183, 265, 276, 365, 659, 691
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 656, 697
HpyF3I	CTNAG	2 cut(s)	215, 589
Hsp92II	CATG	3 cut(s)	354, 571, 578
HspAI	GCGC	3 cut(s)	78, 603, 648
Kzo9I	GATC	1 cut(s)	579
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	3 cut(s)	112, 361, 377
LweI	GCATC	2 cut(s)	279, 376
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	1 cut(s)	581
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	1 cut(s)	579
MboII	GAAGA	6 cut(s)	169, 265, 335, 488, 502, 617
MluCI	AATT	2 cut(s)	6, 224
MlyI	GAGTC	4 cut(s)	24, 94, 277, 388
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	9 cut(s)	80, 181, 225, 316, 408, 536, 551, 598, 635
MseI	TTAA	1 cut(s)	712
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	3 cut(s)	391, 434, 599
MvaI	CCWGG	2 cut(s)	434, 599
MvnI	CGCG	2 cut(s)	63, 78
MwoI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 656, 697
NciI	CCSGG	1 cut(s)	391
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	1 cut(s)	579
NlaIII	CATG	3 cut(s)	354, 571, 578
NlaIV	GGNNCC	1 cut(s)	462
PasI	CCCWGGG	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	471
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	65, 127, 367, 376, 652
PleI	GAGTC	4 cut(s)	23, 94, 277, 388
PpsI	GAGTC	4 cut(s)	23, 94, 277, 388
Psp6I	CCWGG	2 cut(s)	432, 597
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	2 cut(s)	432, 597
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	137, 460
PstI	CTGCAG	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	712
SatI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
Sau3AI	GATC	1 cut(s)	579
Sau96I	GGNCC	2 cut(s)	137, 460
SchI	GAGTC	4 cut(s)	24, 94, 277, 388
ScrFI	CCNGG	3 cut(s)	391, 434, 599
SfaNI	GCATC	2 cut(s)	279, 376
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	460
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	6, 224
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	4 cut(s)	63, 76, 444, 651
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	389, 432, 597
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	632
TaqI	TCGA	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	6, 224
TauI	GCSGC	2 cut(s)	66, 653
Tru1I	TTAA	1 cut(s)	712
Tru9I	TTAA	1 cut(s)	712
TscAI	CASTG	3 cut(s)	618, 661, 702
TseI	GCWGC	3 cut(s)	125, 365, 374
TspDTI	ATGAA	2 cut(s)	177, 503
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	618, 661, 702
Tth111I	GACNNNGTC	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	460
XagI	CCTNNNNNAGG	2 cut(s)	144, 207
XmiI	GTMKAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.