Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005737

Physical Location & Seq

Genomic Coordinates Forward (+)

37904379 .. 37907568

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G449000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAGATAGATAGACTCGATGGTCGTACACCGAACCAGTTGAGGCCATTGGCTTGTTCTCGCAACGTCCTCAACCGTGCTCATGGCTCCGCCAGCTGGTGTCAAGGAGATACCAAAGTTCTTGTTGCGGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAACCCTGAAAAAGCTTGCATTGAGATTATTTGGAAGCCAAAAACAGGCCAGAGTGGAAAACTGGAAAGGGAATATGAGATGATACTAAAGAGGACATTGCAAAGCATCTGCATACTGACTCTCAATCCAAATACCACAACCTCAGTTATTATTCAGGTTGTCAATGATGATGGTGCTCTTCTGCCATGTGCCATAAATGCCGCATGTGCTGCCCTTGTTGATGCCGGGATTCCTCTAAAGCATCTTGCTGTTGCCATTTGTTGTTGCCTCGCAGAGAGTGGATACGTCGTATTGGACCCTAGCAAGCTGGAAGAGCAGAAAATGAAAGCGTTTGCATATTTGGTCTTTCCAAACTCAGTTCTTTCAATCCTTCCAGAAGAACAATTACAGGTTGGAGGTGAACCCGTGGAGCATGGGATCATCACCTCTGTTACCCAGGGTGCAATGTCAGTGGACGACTATCTTCACTGTTTAGAACGAGGGCGTGCTGCCACTGCAAAGATGTCTGCTTTTCTCAGGAAGAGCTTGCAACCACAGCTTCCAATCGATTCGTCTAAAGCCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004536 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0042802 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH

Protein Analysis

244

Amino Acids

26.27

Weight (kDa)

7.5

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210
fragaria_vesca	FvH4_2g35660 FvH4_2g35660 FvH4_2g35660
malus_domestica	MD01G1039900.v1.1 MD15G1311800.v1.1
prunus_persica	Prupe.1G449000_v2.0.a1 Prupe.1G449000_v2.0.a1
pyrus_communis	pycom01g06770 pycom15g27540
rosa_chinensis	RchiOBHm_Chr6g0305271 RchiOBHm_Chr6g0306141
rosa_laevigata	RLG00000010820
rosa_multiflora	Rmu_sc0003594.1_g000013 Rmu_ssc0000276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00162010
rosa_rugosa	Rorug06G0347100
rosa_samantha	Rh6AG459600 Rh6BG441400 Rh6DG460300
rosa_wichuraiana	Rw6G039290 Rw6G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	21
AciI	CCGC	3 cut(s)	90, 128, 366
AclWI	GGATC	1 cut(s)	590
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
AgsI	TTSAA	1 cut(s)	531
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	5 cut(s)	96, 179, 472, 690, 703
AluI	AGCT	5 cut(s)	96, 179, 472, 690, 703
Alw21I	GWGCWC	2 cut(s)	82, 343
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	2 cut(s)	44, 211
ApeKI	GCWGC	2 cut(s)	374, 653
AspS9I	GGNCC	2 cut(s)	137, 460
AsuC2I	CCSGG	2 cut(s)	391, 727
AsuHPI	GGTGA	2 cut(s)	575, 580
AvaII	GGWCC	2 cut(s)	137, 460
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
Bbv12I	GWGCWC	2 cut(s)	82, 343
BbvI	GCAGC	2 cut(s)	361, 640
BccI	CCATC	2 cut(s)	14, 329
BciT130I	CCWGG	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	440
BcnI	CCSGG	2 cut(s)	391, 727
BfaI	CTAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	366, 375, 654
BlsI	GCNGC	3 cut(s)	367, 376, 655
Bme1390I	CCNGG	3 cut(s)	391, 602, 727
Bme18I	GGWCC	2 cut(s)	137, 460
BmgT120I	GGNCC	2 cut(s)	137, 460
BmiI	GGNNCC	2 cut(s)	88, 462
BmrFI	CCNGG	3 cut(s)	391, 602, 727
BmsI	GCATC	3 cut(s)	279, 376, 415
BpuMI	CCSGG	2 cut(s)	391, 727
Bsa29I	ATCGAT	1 cut(s)	711
BsaJI	CCNNGG	3 cut(s)	570, 600, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 146, 209
Bse1I	ACTGG	2 cut(s)	37, 231
Bse3DI	GCAATG	2 cut(s)	260, 615
BseBI	CCWGG	1 cut(s)	602
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	3 cut(s)	570, 600, 601
BseLI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
BseMI	GCAATG	2 cut(s)	260, 615
BseMII	CTCAG	3 cut(s)	321, 534, 694
BseNI	ACTGG	2 cut(s)	37, 231
BseXI	GCAGC	2 cut(s)	361, 640
BshFI	GGCC	2 cut(s)	46, 213
BshVI	ATCGAT	1 cut(s)	711
BsiHKAI	GWGCWC	2 cut(s)	82, 343
BsiSI	CCGG	2 cut(s)	390, 726
BslI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
BsnI	GGCC	2 cut(s)	46, 213
Bsp1286I	GDGCHC	2 cut(s)	82, 343
Bsp143I	GATC	1 cut(s)	582
BspACI	CCGC	3 cut(s)	90, 128, 366
BspANI	GGCC	2 cut(s)	46, 213
BspCNI	CTCAG	3 cut(s)	320, 533, 693
BspDI	ATCGAT	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	88, 462
BspPI	GGATC	1 cut(s)	590
BspQI	GCTCTTC	3 cut(s)	348, 471, 680
BsrDI	GCAATG	2 cut(s)	260, 615
BsrI	ACTGG	2 cut(s)	37, 231
BssECI	CCNNGG	3 cut(s)	570, 600, 601
BssMI	GATC	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	77, 635
Bst6I	CTCTTC	3 cut(s)	348, 471, 680
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	5 cut(s)	94, 181, 470, 651, 692
BstDEI	CTNAG	3 cut(s)	307, 520, 680
BstDSI	CCRYGG	1 cut(s)	570
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	585
BstMBI	GATC	1 cut(s)	582
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 362, 371, 374, 478, 659, 700
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	3 cut(s)	389, 600, 725
BstV1I	GCAGC	2 cut(s)	361, 640
Bsu15I	ATCGAT	1 cut(s)	711
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	46, 213
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	570
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	3 cut(s)	621, 631, 657
Cac8I	GCNNGC	5 cut(s)	94, 181, 470, 651, 692
Cfr13I	GGNCC	2 cut(s)	137, 460
ClaI	ATCGAT	1 cut(s)	711
Csp6I	GTAC	1 cut(s)	27
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	4 cut(s)	83, 351, 369, 578
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	3 cut(s)	307, 520, 680
DpnI	GATC	1 cut(s)	584
DpnII	GATC	1 cut(s)	582
DrdI	GACNNNNNNGTC	1 cut(s)	21
DseDI	GACNNNNNNGTC	1 cut(s)	21
Eam1104I	CTCTTC	3 cut(s)	348, 471, 680
EarI	CTCTTC	3 cut(s)	348, 471, 680
EciI	GGCGGA	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	137, 460
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	600
FaeI	CATG	4 cut(s)	86, 354, 372, 581
FaiI	YATR	9 cut(s)	84, 135, 240, 278, 352, 359, 370, 502, 579
FatI	CATG	4 cut(s)	82, 350, 368, 577
Fnu4HI	GCNGC	3 cut(s)	366, 375, 654
Fsp4HI	GCNGC	3 cut(s)	366, 375, 654
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	3 cut(s)	366, 375, 654
HaeIII	GGCC	2 cut(s)	46, 213
HapII	CCGG	2 cut(s)	390, 726
Hin1II	CATG	4 cut(s)	86, 354, 372, 581
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	4 cut(s)	15, 283, 394, 713
HpaII	CCGG	2 cut(s)	390, 726
HphI	GGTGA	2 cut(s)	575, 580
Hpy166II	GTNNAC	3 cut(s)	29, 566, 619
Hpy188III	TCNNGA	2 cut(s)	539, 682
Hpy8I	GTNNAC	3 cut(s)	29, 566, 619
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	1 cut(s)	545
HpyCH4III	ACNGT	2 cut(s)	77, 635
HpyCH4IV	ACGT	2 cut(s)	66, 450
HpyCH4V	TGCA	7 cut(s)	183, 265, 276, 500, 608, 662, 694
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 362, 371, 374, 478, 659, 700
HpyF3I	CTNAG	3 cut(s)	307, 520, 680
HpySE526I	ACGT	2 cut(s)	66, 450
Hsp92II	CATG	4 cut(s)	86, 354, 372, 581
Kzo9I	GATC	1 cut(s)	582
LguI	GCTCTTC	3 cut(s)	348, 471, 680
LmnI	GCTCC	2 cut(s)	92, 574
Lsp1109I	GCAGC	2 cut(s)	361, 640
LweI	GCATC	3 cut(s)	279, 376, 415
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	2 cut(s)	66, 450
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	1 cut(s)	584
MboI	GATC	1 cut(s)	582
MboII	GAAGA	6 cut(s)	169, 335, 488, 554, 620, 697
MhlI	GDGCHC	2 cut(s)	82, 343
MluCI	AATT	1 cut(s)	548
MlyI	GAGTC	2 cut(s)	9, 277
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	9 cut(s)	36, 80, 249, 316, 408, 443, 554, 601, 638
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	2 cut(s)	390, 726
MspR9I	CCNGG	3 cut(s)	391, 602, 727
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	7 cut(s)	93, 362, 371, 374, 478, 659, 700
NciI	CCSGG	2 cut(s)	391, 727
NdeII	GATC	1 cut(s)	582
NlaIII	CATG	4 cut(s)	86, 354, 372, 581
NlaIV	GGNNCC	2 cut(s)	88, 462
NspI	RCATGY	1 cut(s)	372
PasI	CCCWGGG	1 cut(s)	601
PciSI	GCTCTTC	3 cut(s)	348, 471, 680
PfeI	GAWTC	2 cut(s)	394, 713
PkrI	GCNGC	3 cut(s)	367, 376, 655
PleI	GAGTC	2 cut(s)	9, 277
PpsI	GAGTC	2 cut(s)	9, 277
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	88, 462
PspPI	GGNCC	2 cut(s)	137, 460
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SapI	GCTCTTC	3 cut(s)	348, 471, 680
SatI	GCNGC	3 cut(s)	366, 375, 654
Sau3AI	GATC	1 cut(s)	582
Sau96I	GGNCC	2 cut(s)	137, 460
SchI	GAGTC	2 cut(s)	9, 277
ScrFI	CCNGG	3 cut(s)	391, 602, 727
SduI	GDGCHC	2 cut(s)	82, 343
SfaNI	GCATC	3 cut(s)	279, 376, 415
SinI	GGWCC	2 cut(s)	137, 460
Sse9I	AATT	1 cut(s)	548
SsiI	CCGC	3 cut(s)	90, 128, 366
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	3 cut(s)	389, 600, 725
TaaI	ACNGT	2 cut(s)	77, 635
TaiI	ACGT	2 cut(s)	69, 453
TaqI	TCGA	2 cut(s)	18, 711
TasI	AATT	1 cut(s)	548
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	394, 713
TscAI	CASTG	3 cut(s)	621, 638, 664
TseI	GCWGC	2 cut(s)	374, 653
TspDTI	ATGAA	2 cut(s)	177, 503
TspRI	CASTG	3 cut(s)	621, 638, 664
VpaK11BI	GGWCC	2 cut(s)	137, 460
XagI	CCTNNNNNAGG	1 cut(s)	144
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.