Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005737

Physical Location & Seq

Genomic Coordinates Forward (+)

49765959 .. 49767766

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0347100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGCTCAAGCTGCATGGACTTTCTGTGTCGACCAACACAGCTCGCGTAGTGGCTTGTCTCCATGAAAAAGATGTCGATTTCGAGCTTGTCCCGGTTGATCTTTTTGCCCGTGGAAACAAGGAGCCTTCTTTTCTTGCCAAGAATCCCTTTGGCCAGATTCCAGTATTAGAAGATGGTGGCATCACACTTTTTGAATCTAGGGCAATCACATCCTATGTGGCTGAAAAATTCAAGGAAACCGGAACTGATCTCATAAGGCACGAAAGCTTTGATGAAGCTGCATTGGTTAAGGTATGGACAGAAGTTGAATCCCAACAATACCACCCAGCAATCTGTCCCATTATATACGAGTTTTTTGGAAAACCAGTACAAGGCTTGGAACCAGACCAGGCAGTGATTGATGCAAATTTGGAGAAGCTACAGAAGGTGCTCAACGTTTACGAGGCCAAGCTGAGCAGCACCAAGTACCTTGCTGGTGATTTCTATAGCCTAGCCGATCTTCACCATTTCCCTTACACTTTTTATTTCATGAAGACTACTTGGGGCTCAGTGATCAGTGATCGTCCTCATGTTAAGGCCTGGTGGGATGACATTACGTCTAGGCCTGCTTTGAAGAAAGTTGCTGAGGGTATGACTTTTGGTGAGAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004536 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0042802 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH

Protein Analysis

218

Amino Acids

24.63

Weight (kDa)

5.37

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 76	1.2e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 80	1.1e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	11 - 76	4.8e-13	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	109 - 203	1.9e-18	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	138 - 207	4.9e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210
fragaria_vesca	FvH4_2g35660 FvH4_2g35660 FvH4_2g35660
malus_domestica	MD01G1039900.v1.1 MD15G1311800.v1.1
prunus_persica	Prupe.1G449000_v2.0.a1 Prupe.1G449000_v2.0.a1
pyrus_communis	pycom01g06770 pycom15g27540
rosa_chinensis	RchiOBHm_Chr6g0305271 RchiOBHm_Chr6g0306141
rosa_laevigata	RLG00000010820
rosa_multiflora	Rmu_sc0003594.1_g000013 Rmu_ssc0000276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00162010
rosa_rugosa	Rorug06G0347100
rosa_samantha	Rh6AG459600 Rh6BG441400 Rh6DG460300
rosa_wichuraiana	Rw6G039290 Rw6G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	48
AclI	AACGTT	1 cut(s)	438
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	230, 409
AfaI	GTAC	2 cut(s)	372, 470
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	197, 235, 311, 616
AhdI	GACNNNNNGTC	1 cut(s)	598
AjnI	CCWGG	2 cut(s)	390, 581
AluBI	AGCT	7 cut(s)	13, 44, 88, 270, 281, 421, 454
AluI	AGCT	7 cut(s)	13, 44, 88, 270, 281, 421, 454
Alw21I	GWGCWC	2 cut(s)	9, 435
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	4 cut(s)	154, 447, 579, 605
ApeKI	GCWGC	3 cut(s)	13, 281, 459
ApoI	RAATTY	2 cut(s)	230, 409
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	491, 497, 656
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	9, 435
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	268, 471
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	392, 583
BclI	TGATCA	1 cut(s)	555
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	3 cut(s)	201, 494, 603
BfmI	CTRYAG	2 cut(s)	422, 487
BisI	GCNGC	3 cut(s)	14, 282, 460
BlpI	GCTNAGC	1 cut(s)	455
BlsI	GCNGC	3 cut(s)	15, 283, 461
Bme1390I	CCNGG	3 cut(s)	95, 392, 583
BmeRI	GACNNNNNGTC	1 cut(s)	598
BmiI	GGNNCC	2 cut(s)	126, 384
BmrFI	CCNGG	3 cut(s)	95, 392, 583
BmsI	GCATC	2 cut(s)	192, 394
BpiI	GAAGAC	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	164, 368
BseBI	CCWGG	2 cut(s)	392, 583
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	212, 595
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	3 cut(s)	446, 564, 618
BseNI	ACTGG	2 cut(s)	164, 368
BseXI	GCAGC	2 cut(s)	268, 471
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	4 cut(s)	156, 449, 581, 607
BsiHKAI	GWGCWC	2 cut(s)	9, 435
BsiSI	CCGG	2 cut(s)	95, 243
BslFI	GGGAC	2 cut(s)	77, 324
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	77, 324
BsnI	GGCC	4 cut(s)	156, 449, 581, 607
Bsp1286I	GDGCHC	3 cut(s)	9, 435, 551
Bsp143I	GATC	5 cut(s)	100, 250, 499, 555, 562
Bsp1720I	GCTNAGC	1 cut(s)	455
BspANI	GGCC	4 cut(s)	156, 449, 581, 607
BspCNI	CTCAG	3 cut(s)	447, 563, 619
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	126, 384
BsrI	ACTGG	2 cut(s)	164, 368
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	5 cut(s)	100, 250, 499, 555, 562
Bst2UI	CCWGG	2 cut(s)	392, 583
BstC8I	GCNNGC	2 cut(s)	46, 609
BstDEI	CTNAG	3 cut(s)	455, 550, 627
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	212, 595
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	5 cut(s)	103, 253, 502, 558, 565
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	5 cut(s)	100, 250, 499, 555, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	392, 583
BstSCI	CCNGG	3 cut(s)	93, 390, 581
BstSFI	CTRYAG	2 cut(s)	422, 487
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	268, 471
BstV2I	GAAGAC	1 cut(s)	542
BsuRI	GGCC	4 cut(s)	156, 449, 581, 607
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	212, 595
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	402, 558, 565
Cac8I	GCNNGC	2 cut(s)	46, 609
CciI	TCATGA	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	371, 469
CviAII	CATG	4 cut(s)	17, 65, 532, 572
CviQI	GTAC	2 cut(s)	371, 469
DdeI	CTNAG	3 cut(s)	455, 550, 627
DpnI	GATC	5 cut(s)	102, 252, 501, 557, 564
DpnII	GATC	5 cut(s)	100, 250, 499, 555, 562
DriI	GACNNNNNGTC	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	154
Eam1105I	GACNNNNNGTC	1 cut(s)	598
Eco147I	AGGCCT	2 cut(s)	581, 607
Eco24I	GRGCYC	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	390, 581
EcoT38I	GRGCYC	1 cut(s)	551
FaeI	CATG	4 cut(s)	20, 68, 535, 575
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	77, 324
FatI	CATG	4 cut(s)	16, 64, 531, 571
FbaI	TGATCA	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	14, 282, 460
FokI	GGATG	2 cut(s)	199, 602
FriOI	GRGCYC	1 cut(s)	551
Fsp4HI	GCNGC	3 cut(s)	14, 282, 460
FspBI	CTAG	3 cut(s)	201, 494, 603
GluI	GCNGC	3 cut(s)	14, 282, 460
GsaI	CCCAGC	1 cut(s)	332
HaeIII	GGCC	4 cut(s)	156, 449, 581, 607
HapII	CCGG	2 cut(s)	95, 243
Hin1II	CATG	4 cut(s)	20, 68, 535, 575
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	5 cut(s)	145, 160, 197, 311, 649
HpaII	CCGG	2 cut(s)	95, 243
HphI	GGTGA	3 cut(s)	491, 497, 656
Hpy166II	GTNNAC	2 cut(s)	33, 442
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	2 cut(s)	33, 442
HpyAV	CCTTC	2 cut(s)	138, 421
HpyCH4IV	ACGT	2 cut(s)	438, 599
HpyCH4V	TGCA	3 cut(s)	16, 284, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	3 cut(s)	455, 550, 627
HpySE526I	ACGT	2 cut(s)	438, 599
Hsp92II	CATG	4 cut(s)	20, 68, 535, 575
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	100, 250, 499, 555, 562
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	2 cut(s)	268, 471
LweI	GCATC	2 cut(s)	192, 394
MaeI	CTAG	3 cut(s)	201, 494, 603
MaeII	ACGT	2 cut(s)	438, 599
MalI	GATC	5 cut(s)	102, 252, 501, 557, 564
MboI	GATC	5 cut(s)	100, 250, 499, 555, 562
MboII	GAAGA	4 cut(s)	185, 494, 547, 628
MhlI	GDGCHC	3 cut(s)	9, 435, 551
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	2 cut(s)	230, 409
MluNI	TGGCCA	1 cut(s)	156
MnlI	CCTC	3 cut(s)	439, 579, 622
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	2 cut(s)	291, 576
Msp20I	TGGCCA	1 cut(s)	156
MspI	CCGG	2 cut(s)	95, 243
MspR9I	CCNGG	3 cut(s)	95, 392, 583
MvaI	CCWGG	2 cut(s)	392, 583
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	5 cut(s)	100, 250, 499, 555, 562
NlaIII	CATG	4 cut(s)	20, 68, 535, 575
NlaIV	GGNNCC	2 cut(s)	126, 384
PagI	TCATGA	1 cut(s)	531
PceI	AGGCCT	2 cut(s)	581, 607
PfeI	GAWTC	5 cut(s)	145, 160, 197, 311, 649
PkrI	GCNGC	3 cut(s)	15, 283, 461
Psp1406I	AACGTT	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	390, 581
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	2 cut(s)	390, 581
PspN4I	GGNNCC	2 cut(s)	126, 384
RsaI	GTAC	2 cut(s)	372, 470
RsaNI	GTAC	2 cut(s)	371, 469
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	291, 576
SatI	GCNGC	3 cut(s)	14, 282, 460
Sau3AI	GATC	5 cut(s)	100, 250, 499, 555, 562
ScrFI	CCNGG	3 cut(s)	95, 392, 583
SduI	GDGCHC	3 cut(s)	9, 435, 551
SfaNI	GCATC	2 cut(s)	192, 394
SfcI	CTRYAG	2 cut(s)	422, 487
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	230, 409
SseBI	AGGCCT	2 cut(s)	581, 607
SspMI	CTAG	3 cut(s)	201, 494, 603
StuI	AGGCCT	2 cut(s)	581, 607
StyD4I	CCNGG	3 cut(s)	93, 390, 581
TaiI	ACGT	2 cut(s)	441, 602
TaqI	TCGA	3 cut(s)	32, 78, 84
TasI	AATT	2 cut(s)	230, 409
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	5 cut(s)	145, 160, 197, 311, 649
Tru1I	TTAA	2 cut(s)	291, 576
Tru9I	TTAA	2 cut(s)	291, 576
TscAI	CASTG	3 cut(s)	402, 558, 565
TseI	GCWGC	3 cut(s)	13, 281, 459
TspDTI	ATGAA	4 cut(s)	81, 291, 520, 548
TspRI	CASTG	3 cut(s)	402, 558, 565
XapI	RAATTY	2 cut(s)	230, 409
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	3 cut(s)	201, 494, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.