Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005737

Physical Location & Seq

Genomic Coordinates Reverse (-)

7259618 .. 7262791

Gene Structure 3174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAATTGACAGAGTCGACGGACGCACACCAAACCAGTTGAGACCATTGGCTTGTTCTCGCAGCGTCCTCAACCGCGCTCATGGCTCTGCAAGTTGGACTCAAGGAGATACGAAAGTTCTTGCTGCTGTTTATGGACCTAAAGCAGGAACAAGGAAGAATGAAAATCCCGAAAAAGCTTGCATAGAGGTTATTTGGAAGCCTAAAACAGGCCAGAGTGGAAAACTTGAAAGGGAATATGAGATGATATTGAAGAGGACCTTGCAAAGCATCTGCATACTGACTCTAAACCCAAATACCACAACCTCGGTCATTGTTCAGGTTGTCAATGATGATGGTGCTCTTCTCCCATGTGCCATAAATGCAGCGTGTGCTGCCCTTGTTGATGCTGGGGCTCCTCTAAAACATCTTGCTGTTGCCATATGTTGTTGCCTGGCAGAGAGCGGATATGTCATTTTGGACCCCAGCAAGCTGGAAGAGCAGAAAATGAAGGCGTTTGCGTACTTGGTCTTCCCAAACGCTCTCACAATCCTTCAAGAAGGAGGACCACAGGTGGGAGGTGAACCCATGGAGCACGGGATCATCACCTCGGTGACCCAGGGAGCAATGTCAGTCAACGACTATCTTCACTGTTTAGAACGAGGGCGTGCTGCCACTGCAAAGATGTCTGCATTTCTCCAAAAGAGCTTGCAACCACTGCTATCAGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004536 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0042802 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH

Protein Analysis

238

Amino Acids

25.43

Weight (kDa)

7.53

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210
fragaria_vesca	FvH4_2g35660 FvH4_2g35660 FvH4_2g35660
malus_domestica	MD01G1039900.v1.1 MD15G1311800.v1.1
prunus_persica	Prupe.1G449000_v2.0.a1 Prupe.1G449000_v2.0.a1
pyrus_communis	pycom01g06770 pycom15g27540
rosa_chinensis	RchiOBHm_Chr6g0305271 RchiOBHm_Chr6g0306141
rosa_laevigata	RLG00000010820
rosa_multiflora	Rmu_sc0003594.1_g000013 Rmu_ssc0000276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00162010
rosa_rugosa	Rorug06G0347100
rosa_samantha	Rh6AG459600 Rh6BG441400 Rh6DG460300
rosa_wichuraiana	Rw6G039290 Rw6G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	76, 444
AclWI	GGATC	1 cut(s)	587
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	3 cut(s)	146, 209, 554
AgsI	TTSAA	3 cut(s)	230, 253, 536
AjnI	CCWGG	2 cut(s)	432, 597
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	3 cut(s)	179, 472, 687
AluI	AGCT	3 cut(s)	179, 472, 687
Alw21I	GWGCWC	2 cut(s)	343, 576
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	587
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	5 cut(s)	63, 125, 365, 374, 650
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	4 cut(s)	137, 258, 460, 545
AsuHPI	GGTGA	3 cut(s)	572, 577, 604
AvaII	GGWCC	4 cut(s)	137, 258, 460, 545
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BanII	GRGCYC	1 cut(s)	397
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
BbsI	GAAGAC	1 cut(s)	502
Bbv12I	GWGCWC	2 cut(s)	343, 576
BbvI	GCAGC	5 cut(s)	75, 112, 361, 377, 637
BccI	CCATC	2 cut(s)	329, 701
BciT130I	CCWGG	2 cut(s)	434, 599
BcoDI	GTCTC	1 cut(s)	37
BisI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
BlsI	GCNGC	5 cut(s)	65, 127, 367, 376, 652
Bme1390I	CCNGG	2 cut(s)	434, 599
Bme18I	GGWCC	4 cut(s)	137, 258, 460, 545
BmgT120I	GGNCC	4 cut(s)	137, 258, 460, 545
BmiI	GGNNCC	2 cut(s)	396, 462
BmrFI	CCNGG	2 cut(s)	434, 599
BmsI	GCATC	2 cut(s)	279, 376
BpiI	GAAGAC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	5 cut(s)	306, 567, 588, 597, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 209, 554
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	434, 599
BseDI	CCNNGG	5 cut(s)	306, 567, 588, 597, 598
BseLI	CCNNNNNNNGG	3 cut(s)	146, 209, 554
BseMI	GCAATG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	5 cut(s)	75, 112, 361, 377, 637
BseYI	CCCAGC	2 cut(s)	389, 464
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	343, 576
BslI	CCNNNNNNNGG	3 cut(s)	146, 209, 554
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	343, 397, 576
Bsp143I	GATC	1 cut(s)	579
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	2 cut(s)	76, 444
BspANI	GGCC	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	396, 462
BspPI	GGATC	1 cut(s)	587
BspQI	GCTCTTC	2 cut(s)	348, 471
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	5 cut(s)	306, 567, 588, 597, 598
BssMI	GATC	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	434, 599
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	3 cut(s)	248, 348, 471
BstAPI	GCANNNNNTGC	2 cut(s)	371, 697
BstC8I	GCNNGC	4 cut(s)	181, 470, 648, 689
BstDSI	CCRYGG	1 cut(s)	567
BstEII	GGTNACC	1 cut(s)	592
BstENI	CCTNNNNNAGG	2 cut(s)	144, 207
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	582
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	579
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 656, 697
BstNI	CCWGG	2 cut(s)	434, 599
BstPI	GGTNACC	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	432, 597
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	5 cut(s)	75, 112, 361, 377, 637
BstV2I	GAAGAC	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	567
BtsI	GCAGTG	2 cut(s)	654, 695
BtsIMutI	CAGTG	3 cut(s)	628, 654, 695
Cac8I	GCNNGC	4 cut(s)	181, 470, 648, 689
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	137, 258, 460, 545
CseI	GACGC	2 cut(s)	33, 55
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	3 cut(s)	83, 351, 568
CviJI	RGCY	8 cut(s)	53, 87, 179, 202, 213, 395, 472, 687
CviKI_1	RGCY	8 cut(s)	53, 87, 179, 202, 213, 395, 472, 687
CviQI	GTAC	1 cut(s)	502
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
Eam1104I	CTCTTC	3 cut(s)	248, 348, 471
EarI	CTCTTC	3 cut(s)	248, 348, 471
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	4 cut(s)	137, 258, 460, 545
Eco91I	GGTNACC	1 cut(s)	592
EcoNI	CCTNNNNNAGG	2 cut(s)	144, 207
EcoO109I	RGGNCCY	1 cut(s)	258
EcoO65I	GGTNACC	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	432, 597
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	3 cut(s)	86, 354, 571
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	3 cut(s)	82, 350, 567
FauNDI	CATATG	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
GsaI	CCCAGC	2 cut(s)	393, 468
HaeIII	GGCC	1 cut(s)	213
HgaI	GACGC	2 cut(s)	33, 55
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	86, 354, 571
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	2 cut(s)	19, 616
HindII	GTYRAC	2 cut(s)	19, 616
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	3 cut(s)	15, 100, 283
HphI	GGTGA	3 cut(s)	572, 577, 604
Hpy166II	GTNNAC	3 cut(s)	19, 563, 616
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	2 cut(s)	170, 536
Hpy8I	GTNNAC	3 cut(s)	19, 563, 616
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	484, 533, 542
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4V	TGCA	8 cut(s)	92, 183, 265, 276, 365, 659, 671, 691
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 656, 697
Hsp92II	CATG	3 cut(s)	86, 354, 571
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	579
LguI	GCTCTTC	2 cut(s)	348, 471
LmnI	GCTCC	3 cut(s)	400, 571, 602
Lsp1109I	GCAGC	5 cut(s)	75, 112, 361, 377, 637
LweI	GCATC	2 cut(s)	279, 376
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	1 cut(s)	581
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	1 cut(s)	579
MboII	GAAGA	6 cut(s)	169, 265, 335, 488, 502, 617
MhlI	GDGCHC	3 cut(s)	343, 397, 576
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	3 cut(s)	24, 94, 277
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	9 cut(s)	80, 181, 249, 316, 408, 536, 551, 598, 635
MslI	CAYNNNNRTG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	434, 599
MvaI	CCWGG	2 cut(s)	434, 599
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 656, 697
NcoI	CCATGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	422
NdeII	GATC	1 cut(s)	579
NlaIII	CATG	3 cut(s)	86, 354, 571
NlaIV	GGNNCC	2 cut(s)	396, 462
NmuCI	GTSAC	1 cut(s)	592
OliI	CACNNNNGTG	1 cut(s)	590
PasI	CCCWGGG	1 cut(s)	598
PciSI	GCTCTTC	2 cut(s)	348, 471
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	65, 127, 367, 376, 652
PleI	GAGTC	3 cut(s)	23, 94, 277
PpsI	GAGTC	3 cut(s)	23, 94, 277
PpuMI	RGGWCCY	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	432, 597
PspEI	GGTNACC	1 cut(s)	592
PspFI	CCCAGC	2 cut(s)	389, 464
PspGI	CCWGG	2 cut(s)	432, 597
PspN4I	GGNNCC	2 cut(s)	396, 462
PspPI	GGNCC	4 cut(s)	137, 258, 460, 545
PspPPI	RGGWCCY	1 cut(s)	258
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	17
SapI	GCTCTTC	2 cut(s)	348, 471
SatI	GCNGC	5 cut(s)	64, 126, 366, 375, 651
Sau3AI	GATC	1 cut(s)	579
Sau96I	GGNCC	4 cut(s)	137, 258, 460, 545
SchI	GAGTC	3 cut(s)	24, 94, 277
ScrFI	CCNGG	2 cut(s)	434, 599
SduI	GDGCHC	3 cut(s)	343, 397, 576
SfaNI	GCATC	2 cut(s)	279, 376
SinI	GGWCC	4 cut(s)	137, 258, 460, 545
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	2 cut(s)	76, 444
StyD4I	CCNGG	2 cut(s)	432, 597
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	632
TaqI	TCGA	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	1 cut(s)	6
TscAI	CASTG	3 cut(s)	635, 661, 702
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	5 cut(s)	63, 125, 365, 374, 650
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	2 cut(s)	177, 503
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	635, 661, 702
Tth111I	GACNNNGTC	1 cut(s)	14
VpaK11BI	GGWCC	4 cut(s)	137, 258, 460, 545
XagI	CCTNNNNNAGG	2 cut(s)	144, 207
XmiI	GTMKAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.