Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000276.1

Orthogroup ID

OG0005737

Physical Location & Seq

Genomic Coordinates Forward (+)

37223 .. 37675

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000276.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggaaattgacagattggatggtcgtacaccgaaccagttgagaccactgtcctgtactcgcaacgttctcaaccgagctcatggctctgccagttggtgtcaaggggataccaaagttcttgctgcagtttatggacccaaagcggggacaaagaagaatgaaaaccctgaaaaggcttgcattgaggttatttggaagcctaaaacaggccagagtggtgagtttctgcaactatactttgtgctttgtgataatttgcctacaatagctctaagtttgctatctaagtttggtttgttctgttattgctatctaagttttgctagatttttgtgcatgatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004536 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0042802 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH

Protein Analysis

115

Amino Acids

12.9

Weight (kDa)

8.9

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210
fragaria_vesca	FvH4_2g35660 FvH4_2g35660 FvH4_2g35660
malus_domestica	MD01G1039900.v1.1 MD15G1311800.v1.1
prunus_persica	Prupe.1G449000_v2.0.a1 Prupe.1G449000_v2.0.a1
pyrus_communis	pycom01g06770 pycom15g27540
rosa_chinensis	RchiOBHm_Chr6g0305271 RchiOBHm_Chr6g0306141
rosa_laevigata	RLG00000010820
rosa_multiflora	Rmu_sc0003594.1_g000013 Rmu_ssc0000276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00162010
rosa_rugosa	Rorug06G0347100
rosa_samantha	Rh6AG459600 Rh6BG441400 Rh6DG460300
rosa_wichuraiana	Rw6G039290 Rw6G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AclI	AACGTT	1 cut(s)	66
AfaI	GTAC	2 cut(s)	28, 58
AfiI	CCNNNNNNNGG	4 cut(s)	146, 147, 175, 209
AluBI	AGCT	2 cut(s)	80, 272
AluI	AGCT	2 cut(s)	80, 272
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 147, 175, 209
Bse1I	ACTGG	2 cut(s)	37, 93
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	4 cut(s)	146, 147, 175, 209
BseNI	ACTGG	2 cut(s)	37, 93
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	4 cut(s)	146, 147, 175, 209
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	82
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	37, 93
Bst4CI	ACNGT	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	3 cut(s)	275, 288, 317
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	37
BstPAI	GACNNNNGTC	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	27, 57
CviAII	CATG	2 cut(s)	83, 340
CviJI	RGCY	6 cut(s)	80, 87, 179, 202, 213, 272
CviKI_1	RGCY	6 cut(s)	80, 87, 179, 202, 213, 272
CviQI	GTAC	2 cut(s)	27, 57
DdeI	CTNAG	3 cut(s)	275, 288, 317
Ecl136II	GAGCTC	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	137
Eco53kI	GAGCTC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	82
FaeI	CATG	2 cut(s)	86, 343
FaiI	YATR	5 cut(s)	84, 135, 238, 341, 346
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	82, 339
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	86, 343
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	128, 183, 232, 339
HpyF3I	CTNAG	3 cut(s)	275, 288, 317
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	86, 343
LpnPI	CCDG	6 cut(s)	50, 67, 106, 183, 195, 227
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	66
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	6, 256
MnlI	CCTC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	86, 343
NlaIV	GGNNCC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	28, 58
RsaNI	GTAC	2 cut(s)	27, 57
SacI	GAGCTC	1 cut(s)	82
SatI	GCNGC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	69, 82, 192, 274
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	137
Sse9I	AATT	2 cut(s)	6, 256
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	1 cut(s)	69
TasI	AATT	2 cut(s)	6, 256
TatI	WGTACW	1 cut(s)	56
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	207
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.