Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005737

Physical Location & Seq

Genomic Coordinates Forward (+)

63318036 .. 63325134

Gene Structure 7099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAAATTGACAGATTAGATGGTCGTACACCAAACCAGTTGAGACCACTGGCCTGTACTCGCAACGTTCTCAACCGAGCTCATGGCTCTGCCAGTTGGTGTCAAGGGGATACCAAAGTTCTTGCTGCAGTTTATGGACCCAAAGCGGGGACAAAGAAGAATGAAAACCCTGAAAAGGCTTGCATTGAGGTTATTTGGAAGCCTAAAACAGGCCAGAGTGGAAAAACAGAAAGGGAATATGAGATGATATTGAAAAGGACCTTGCAAAGCATCTATATACTGACTCTCAACCCAATTCAGTTGGTAGTCAATACAATGGAGCTTGGAAGCATGATTCGGCACGTGGCGGATTGTTGTTTATTCAAAAAAAGAAAAGAAAAAACAAGAACAAAGTATTCCACAATACAAACCAAAACCCCACATTTCTCTTTAATCACTTTCCAAGGTTCACATCTATTGCAGATGGAATTTGGAATTAATACAAAAGAAAAAGAAGGGTCGCCACAACGTCACCATCACTATGAGAGGGGACGTTGGCACCATGCTCAGTTTCCCTTGAGATGGCGTCATGTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004536 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0042802 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH

Protein Analysis

192

Amino Acids

22.27

Weight (kDa)

9.88

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	13 - 106	1e-12	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210
fragaria_vesca	FvH4_2g35660 FvH4_2g35660 FvH4_2g35660
malus_domestica	MD01G1039900.v1.1 MD15G1311800.v1.1
prunus_persica	Prupe.1G449000_v2.0.a1 Prupe.1G449000_v2.0.a1
pyrus_communis	pycom01g06770 pycom15g27540
rosa_chinensis	RchiOBHm_Chr6g0305271 RchiOBHm_Chr6g0306141
rosa_laevigata	RLG00000010820
rosa_multiflora	Rmu_sc0003594.1_g000013 Rmu_ssc0000276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00162010
rosa_rugosa	Rorug06G0347100
rosa_samantha	Rh6AG459600 Rh6BG441400 Rh6DG460300
rosa_wichuraiana	Rw6G039290 Rw6G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	537
AciI	CCGC	2 cut(s)	146, 347
AclI	AACGTT	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	467
AcvI	CACGTG	1 cut(s)	343
AcyI	GRCGYC	1 cut(s)	565
AfaI	GTAC	2 cut(s)	28, 58
AfiI	CCNNNNNNNGG	5 cut(s)	146, 147, 175, 209, 561
AgsI	TTSAA	2 cut(s)	253, 364
AluBI	AGCT	2 cut(s)	80, 322
AluI	AGCT	2 cut(s)	80, 322
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	2 cut(s)	51, 211
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	467
AseI	ATTAAT	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	137, 258
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	137, 258
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	82
BbrPI	CACGTG	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	4 cut(s)	14, 457, 522, 555
BciVI	GTATCC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme18I	GGWCC	2 cut(s)	137, 258
BmgT120I	GGNCC	2 cut(s)	137, 258
BmiI	GGNNCC	2 cut(s)	139, 539
BmsI	GCATC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	577
BsaAI	YACGTR	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	565
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 147, 175, 209, 561
Bse1I	ACTGG	3 cut(s)	37, 54, 93
BseDI	CCNNGG	1 cut(s)	442
BseLI	CCNNNNNNNGG	5 cut(s)	146, 147, 175, 209, 561
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	3 cut(s)	37, 54, 93
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	2 cut(s)	53, 213
BshNI	GGYRCC	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	163, 543
BslI	CCNNNNNNNGG	5 cut(s)	146, 147, 175, 209, 561
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	163, 543
BsnI	GGCC	2 cut(s)	53, 213
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	146, 347
BspANI	GGCC	2 cut(s)	53, 213
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	139, 539
BspMAI	CTGCAG	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	37, 54, 93
BssECI	CCNNGG	1 cut(s)	442
BssNI	GRCGYC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	442
BstACI	GRCGYC	1 cut(s)	565
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	546
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	53, 213
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	137, 258
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	27, 57
CviAII	CATG	4 cut(s)	83, 331, 542, 569
CviJI	RGCY	7 cut(s)	53, 80, 87, 179, 202, 213, 322
CviKI_1	RGCY	7 cut(s)	53, 80, 87, 179, 202, 213, 322
CviQI	GTAC	2 cut(s)	27, 57
DdeI	CTNAG	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	137, 258
Eco53kI	GAGCTC	1 cut(s)	80
Eco72I	CACGTG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	4 cut(s)	86, 334, 545, 572
FaiI	YATR	9 cut(s)	84, 135, 240, 276, 278, 332, 522, 543, 570
FaqI	GGGAC	2 cut(s)	163, 543
FatI	CATG	4 cut(s)	82, 330, 541, 568
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	126
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	53, 213
HgaI	GACGC	1 cut(s)	554
Hin1I	GRCGYC	1 cut(s)	565
Hin1II	CATG	4 cut(s)	86, 334, 545, 572
HinfI	GANTC	2 cut(s)	283, 334
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	29, 449
Hpy8I	GTNNAC	2 cut(s)	29, 449
HpyAV	CCTTC	1 cut(s)	488
HpyCH4IV	ACGT	4 cut(s)	66, 342, 508, 532
HpyCH4V	TGCA	4 cut(s)	128, 183, 265, 460
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	4 cut(s)	66, 342, 508, 532
Hsp92I	GRCGYC	1 cut(s)	565
Hsp92II	CATG	4 cut(s)	86, 334, 545, 572
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	7 cut(s)	35, 50, 67, 106, 183, 195, 227
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	279
MaeII	ACGT	4 cut(s)	66, 342, 508, 532
MaeIII	GTNAC	1 cut(s)	509
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	4 cut(s)	6, 294, 467, 474
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	2 cut(s)	181, 519
MseI	TTAA	2 cut(s)	431, 477
MslI	CAYNNNNRTG	1 cut(s)	519
NlaIII	CATG	4 cut(s)	86, 334, 545, 572
NlaIV	GGNNCC	2 cut(s)	139, 539
NmuCI	GTSAC	1 cut(s)	509
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	277
PmaCI	CACGTG	1 cut(s)	343
PmlI	CACGTG	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	343
PpuMI	RGGWCCY	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	258
PspCI	CACGTG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	139, 539
PspPI	GGNCC	2 cut(s)	137, 258
PspPPI	RGGWCCY	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	28, 58
RsaNI	GTAC	2 cut(s)	27, 57
RseI	CAYNNNNRTG	1 cut(s)	519
SacI	GAGCTC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	431, 477
SatI	GCNGC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	137, 258
SchI	GAGTC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	9 cut(s)	69, 82, 192, 263, 324, 345, 448, 511, 535
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	2 cut(s)	137, 258
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	4 cut(s)	6, 294, 467, 474
SsiI	CCGC	2 cut(s)	146, 347
SstI	GAGCTC	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	442
TaiI	ACGT	4 cut(s)	69, 345, 511, 535
TasI	AATT	4 cut(s)	6, 294, 467, 474
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	2 cut(s)	431, 477
Tru9I	TTAA	2 cut(s)	431, 477
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	137, 258
VspI	ATTAAT	1 cut(s)	477
XagI	CCTNNNNNAGG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.