Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005737

Physical Location & Seq

Genomic Coordinates Forward (+)

23025520 .. 23028367

Gene Structure 2848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAAATTGACAGAGTCGACGGACGCACGCCAAACCAGTTGAGACCATTGGCTTGTTCTCTCGGCGTCCTCAACCGCGCTCACGGCTCTGCAAGTTGGACTCAAGGAGATACGAAAGTTCTGGCTGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCCGAAAAAGCTTGCATTGAGGTTATTTGGAAACCTAAAACAGGCCAGAGTGGAAAATTGGAGAGGGAATATGAGATGATATTGAAGAGAACCTTGCAAAGCATCTGCATACTGACTCTAAACCCAAATACCACAACCTCGGTCATTGTTCAGGTTGTCAATGATGATGGTTCTCTTCTGCCATGTGCCATAAATGCAGCGTGTGCTGCCCTTGTTGATGCTGGGGCTCCTCTAAAACATCTTGCTGTTGCTATATGTTGTTGCCTGGCAGAGAGCGGATACGTCGTATTGGACCCCAGCAAGCTGGAAGAGCAGAAAATGAAGGCGTTTGCATATTTGGTCTTCCCAAACTCTCTTACAACCCTTCCAGAAGGAGGATTACGGGTGGGAGGTGAACCCATGGAGCATGGGATCGATCACCTCGGTTACCCAGGGCGCAATGTCAGTGGACGACTATCTTCACAGTTTAGAACGAGGGCGCGCCGCCACTGCAAAGATGTCGGGATTTCTCCAAAAAAGCTTGCAACCACTGCTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004536 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0042802 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH

Protein Analysis

237

Amino Acids

25.48

Weight (kDa)

9.06

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	13 - 133	2.2e-29	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210 AT3G46210
fragaria_vesca	FvH4_2g35660 FvH4_2g35660 FvH4_2g35660
malus_domestica	MD01G1039900.v1.1 MD15G1311800.v1.1
prunus_persica	Prupe.1G449000_v2.0.a1 Prupe.1G449000_v2.0.a1
pyrus_communis	pycom01g06770 pycom15g27540
rosa_chinensis	RchiOBHm_Chr6g0305271 RchiOBHm_Chr6g0306141
rosa_laevigata	RLG00000010820
rosa_multiflora	Rmu_sc0003594.1_g000013 Rmu_ssc0000276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00162010
rosa_rugosa	Rorug06G0347100
rosa_samantha	Rh6AG459600 Rh6BG441400 Rh6DG460300
rosa_wichuraiana	Rw6G039290 Rw6G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	2 cut(s)	78, 649
AciI	CCGC	3 cut(s)	76, 444, 652
AclWI	GGATC	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	66
AfiI	CCNNNNNNNGG	3 cut(s)	146, 209, 542
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	432, 598
AluBI	AGCT	3 cut(s)	179, 472, 688
AluI	AGCT	3 cut(s)	179, 472, 688
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	587
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	125, 365, 374
AscI	GGCGCGCC	1 cut(s)	647
AspLEI	GCGC	4 cut(s)	80, 606, 649, 651
AspS9I	GGNCC	2 cut(s)	137, 460
AsuHPI	GGTGA	2 cut(s)	572, 578
AvaII	GGWCC	2 cut(s)	137, 460
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BanII	GRGCYC	1 cut(s)	397
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	112, 361, 377
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	649, 683
BciT130I	CCWGG	2 cut(s)	434, 600
BciVI	GTATCC	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	4 cut(s)	126, 366, 375, 652
BlsI	GCNGC	4 cut(s)	127, 367, 376, 653
Bme1390I	CCNGG	2 cut(s)	434, 600
Bme18I	GGWCC	2 cut(s)	137, 460
BmgT120I	GGNCC	2 cut(s)	137, 460
BmiI	GGNNCC	2 cut(s)	396, 462
BmrFI	CCNGG	2 cut(s)	434, 600
BmsI	GCATC	2 cut(s)	279, 376
BpiI	GAAGAC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	582
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	5 cut(s)	306, 567, 589, 598, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 209, 542
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	434, 600
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	5 cut(s)	306, 567, 589, 598, 599
BseLI	CCNNNNNNNGG	3 cut(s)	146, 209, 542
BseMI	GCAATG	1 cut(s)	613
BseNI	ACTGG	1 cut(s)	37
BsePI	GCGCGC	1 cut(s)	647
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	112, 361, 377
BseYI	CCCAGC	2 cut(s)	389, 464
Bsh1236I	CGCG	2 cut(s)	78, 649
BshFI	GGCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	582
BslI	CCNNNNNNNGG	3 cut(s)	146, 209, 542
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	579, 583
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	3 cut(s)	76, 444, 652
BspANI	GGCC	1 cut(s)	213
BspDI	ATCGAT	1 cut(s)	582
BspFNI	CGCG	2 cut(s)	78, 649
BspLI	GGNNCC	2 cut(s)	396, 462
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	1 cut(s)	587
BspQI	GCTCTTC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	5 cut(s)	306, 567, 589, 598, 599
BssHII	GCGCGC	1 cut(s)	647
BssMI	GATC	2 cut(s)	579, 583
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	434, 600
Bst4CI	ACNGT	1 cut(s)	633
Bst6I	CTCTTC	3 cut(s)	248, 348, 471
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	2 cut(s)	371, 698
BstC8I	GCNNGC	5 cut(s)	29, 181, 470, 649, 690
BstDSI	CCRYGG	1 cut(s)	567
BstEII	GGTNACC	1 cut(s)	593
BstENI	CCTNNNNNAGG	2 cut(s)	144, 207
BstFNI	CGCG	2 cut(s)	78, 649
BstHHI	GCGC	4 cut(s)	80, 606, 649, 651
BstKTI	GATC	2 cut(s)	582, 586
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	579, 583
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 657, 698
BstNI	CCWGG	2 cut(s)	434, 600
BstPI	GGTNACC	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	432, 598
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	2 cut(s)	78, 649
BstV1I	GCAGC	3 cut(s)	112, 361, 377
BstV2I	GAAGAC	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	582
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	567
BtsI	GCAGTG	2 cut(s)	655, 696
BtsIMutI	CAGTG	3 cut(s)	619, 655, 696
Cac8I	GCNNGC	5 cut(s)	29, 181, 470, 649, 690
CfoI	GCGC	4 cut(s)	80, 606, 649, 651
Cfr13I	GGNCC	2 cut(s)	137, 460
ClaI	ATCGAT	1 cut(s)	582
CseI	GACGC	2 cut(s)	33, 55
CspCI	CAANNNNNGTGG	2 cut(s)	595, 630
CviAII	CATG	3 cut(s)	351, 568, 575
CviJI	RGCY	8 cut(s)	53, 87, 125, 179, 213, 395, 472, 688
CviKI_1	RGCY	8 cut(s)	53, 87, 125, 179, 213, 395, 472, 688
DpnI	GATC	2 cut(s)	581, 585
DpnII	GATC	2 cut(s)	579, 583
Eam1104I	CTCTTC	3 cut(s)	248, 348, 471
EarI	CTCTTC	3 cut(s)	248, 348, 471
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	137, 460
Eco91I	GGTNACC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	2 cut(s)	144, 207
EcoO65I	GGTNACC	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	432, 598
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	3 cut(s)	354, 571, 578
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	3 cut(s)	350, 567, 574
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	126, 366, 375, 652
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	4 cut(s)	126, 366, 375, 652
GlaI	GCGC	4 cut(s)	79, 605, 648, 650
GluI	GCNGC	4 cut(s)	126, 366, 375, 652
GsaI	CCCAGC	2 cut(s)	393, 468
HaeIII	GGCC	1 cut(s)	213
HgaI	GACGC	2 cut(s)	33, 55
HhaI	GCGC	4 cut(s)	80, 606, 649, 651
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	354, 571, 578
Hin6I	GCGC	4 cut(s)	78, 604, 647, 649
HinP1I	GCGC	4 cut(s)	78, 604, 647, 649
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	2 cut(s)	177, 686
HinfI	GANTC	3 cut(s)	15, 100, 283
HphI	GGTGA	2 cut(s)	572, 578
Hpy166II	GTNNAC	3 cut(s)	19, 563, 617
Hpy188I	TCNGA	1 cut(s)	707
Hpy188III	TCNNGA	3 cut(s)	170, 536, 670
Hpy8I	GTNNAC	3 cut(s)	19, 563, 617
Hpy99I	CGWCG	2 cut(s)	23, 455
HpyAV	CCTTC	3 cut(s)	484, 533, 542
HpyCH4III	ACNGT	1 cut(s)	633
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	9 cut(s)	92, 128, 183, 265, 276, 365, 500, 660, 692
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 657, 698
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	354, 571, 578
HspAI	GCGC	4 cut(s)	78, 604, 647, 649
Kzo9I	GATC	2 cut(s)	579, 583
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	400, 571
Lsp1109I	GCAGC	3 cut(s)	112, 361, 377
LweI	GCATC	2 cut(s)	279, 376
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	2 cut(s)	581, 585
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	2 cut(s)	579, 583
MboII	GAAGA	6 cut(s)	169, 265, 335, 488, 502, 618
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	6, 224
MlyI	GAGTC	3 cut(s)	24, 94, 277
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	9 cut(s)	80, 181, 225, 316, 408, 536, 551, 599, 636
MspR9I	CCNGG	2 cut(s)	434, 600
MvaI	CCWGG	2 cut(s)	434, 600
MvnI	CGCG	2 cut(s)	78, 649
MwoI	GCNNNNNNNGC	7 cut(s)	84, 362, 371, 374, 478, 657, 698
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	579, 583
NlaIII	CATG	3 cut(s)	354, 571, 578
NlaIV	GGNNCC	2 cut(s)	396, 462
NmeAIII	GCCGAG	1 cut(s)	42
PalAI	GGCGCGCC	1 cut(s)	647
PasI	CCCWGGG	1 cut(s)	599
PauI	GCGCGC	1 cut(s)	647
PciSI	GCTCTTC	1 cut(s)	471
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	127, 367, 376, 653
PleI	GAGTC	3 cut(s)	23, 94, 277
PpsI	GAGTC	3 cut(s)	23, 94, 277
Psp6I	CCWGG	2 cut(s)	432, 598
PspEI	GGTNACC	1 cut(s)	593
PspFI	CCCAGC	2 cut(s)	389, 464
PspGI	CCWGG	2 cut(s)	432, 598
PspN4I	GGNNCC	2 cut(s)	396, 462
PspPI	GGNCC	2 cut(s)	137, 460
PstI	CTGCAG	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	14
PteI	GCGCGC	1 cut(s)	647
SalI	GTCGAC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	471
SatI	GCNGC	4 cut(s)	126, 366, 375, 652
Sau3AI	GATC	2 cut(s)	579, 583
Sau96I	GGNCC	2 cut(s)	137, 460
SchI	GAGTC	3 cut(s)	24, 94, 277
ScrFI	CCNGG	2 cut(s)	434, 600
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	2 cut(s)	279, 376
SfcI	CTRYAG	1 cut(s)	126
SgsI	GGCGCGCC	1 cut(s)	647
SinI	GGWCC	2 cut(s)	137, 460
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	6, 224
SsiI	CCGC	3 cut(s)	76, 444, 652
StyD4I	CCNGG	2 cut(s)	432, 598
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	633
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	18, 582
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	6, 224
TauI	GCSGC	1 cut(s)	654
TscAI	CASTG	3 cut(s)	619, 662, 703
TseI	GCWGC	3 cut(s)	125, 365, 374
TspDTI	ATGAA	2 cut(s)	177, 503
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	619, 662, 703
Tth111I	GACNNNGTC	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	137, 460
XagI	CCTNNNNNAGG	2 cut(s)	144, 207
XmiI	GTMKAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.