Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014187

Physical Location & Seq

Genomic Coordinates Forward (+)

17148232 .. 17149597

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCGAACGGCACGGATCAGGCTCAACCACCACCGGAGAACCCGGCTACTCCGGTGGATTCGAAGTCACGGAAACGTGCGACGCCAGGGGATGATAATTGGCTTCCTCCTGATTGGAGAACCGAAATTAGGGTTCGAACCTCTGGCACTAAAGCTGGTACTGTTGATAAGTTCTACTACGAACCGATTACGGGTCGTAAGTTCCGGTCCAAGAACGAGGTTTTGTACTATTTGGAACACGGGACGCCTAAAAAGAAGTCCGTCAAGACAGCGGAAAACGGAGACTCACATTCCGAACATTCTGAAGGTAGAGGAAGCGCTAGGCGGCAGACAAAATCCAACAAAAAGGTTACTGAGCCACCGCCAAAGCCGTTGAACTTCGATTTTCTGAATGTGCCGGAGAAGGTTACTTGGACTGGGATAAACGGTTCAGAAGAAGCTTGGTTGCCTTTCATTGGGGACTACAAGATTCAAGAATCTGTCAGCCAAGATTGGGACAGAGTATTCACTCTTGTCACCTCCCAAAACGCTGGAAAAACGATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005730 GO:0005731 GO:0008327 GO:0010369 GO:0010370 GO:0019899 GO:0030874 GO:0031974 GO:0031981 GO:0032991 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043621 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

182

Amino Acids

20.56

Weight (kDa)

9.2

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	26 - 135	2.9e-21	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46580 AT5G59380
fragaria_vesca	FvH4_3g36180
malus_domestica	MD03G1092700.v1.1 MD11G1107500.v1.1
prunus_persica	Prupe.6G076700_v2.0.a1
pyrus_communis	pycom03g07410
rosa_chinensis	RchiOBHm_Chr5g0064931
rosa_laevigata	RLG00000035743
rosa_multiflora	Rmu_sc0003352.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016390
rosa_rugosa	Rorug05G0366700
rosa_samantha	Rh5AG425200 Rh5BG440000 Rh5CG462700 Rh5DG453200
rosa_wichuraiana	Rw5G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	272, 325, 362
AclWI	GGATC	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	2 cut(s)	83, 245
AfaI	GTAC	2 cut(s)	160, 227
AfeI	AGCGCT	1 cut(s)	319
AfiI	CCNNNNNNNGG	4 cut(s)	129, 191, 455, 493
AgsI	TTSAA	2 cut(s)	376, 473
AjnI	CCWGG	1 cut(s)	85
AloI	GAACNNNNNNTCC	2 cut(s)	412, 444
AluBI	AGCT	2 cut(s)	155, 440
AluI	AGCT	2 cut(s)	155, 440
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	24
Aor51HI	AGCGCT	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	508
AsuII	TTCGAA	2 cut(s)	62, 136
AvaII	GGWCC	1 cut(s)	207
BceAI	ACGGC	2 cut(s)	25, 355
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	2 cut(s)	321, 547
BfoI	RGCGCY	1 cut(s)	321
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	44, 87
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	44, 87
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
Bpu14I	TTCGAA	2 cut(s)	62, 136
BpuMI	CCSGG	1 cut(s)	44
BsaHI	GRCGYC	2 cut(s)	83, 245
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	3 cut(s)	34, 52, 204
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 191, 455, 493
Bse1I	ACTGG	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	4 cut(s)	129, 191, 455, 493
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	421
BsiSI	CCGG	5 cut(s)	35, 44, 53, 205, 398
BslFI	GGGAC	3 cut(s)	256, 473, 509
BslI	CCNNNNNNNGG	4 cut(s)	129, 191, 455, 493
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	3 cut(s)	256, 473, 509
Bsp119I	TTCGAA	2 cut(s)	62, 136
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	3 cut(s)	272, 325, 362
BspCNI	CTCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	24
BspT104I	TTCGAA	2 cut(s)	62, 136
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	2 cut(s)	83, 245
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	163, 428
BstACI	GRCGYC	2 cut(s)	83, 245
BstBI	TTCGAA	2 cut(s)	62, 136
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	42, 85
BstXI	CCANNNNNNTGG	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	97
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	2 cut(s)	91, 253
Csp6I	GTAC	2 cut(s)	159, 226
CviJI	RGCY	8 cut(s)	23, 47, 103, 155, 358, 370, 440, 486
CviKI_1	RGCY	8 cut(s)	23, 47, 103, 155, 358, 370, 440, 486
CviQI	GTAC	2 cut(s)	159, 226
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	85
FaqI	GGGAC	3 cut(s)	256, 473, 509
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	2 cut(s)	321, 547
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	321
HapII	CCGG	5 cut(s)	35, 44, 53, 205, 398
HgaI	GACGC	2 cut(s)	91, 253
HhaI	GCGC	1 cut(s)	320
Hin1I	GRCGYC	2 cut(s)	83, 245
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	4 cut(s)	59, 284, 469, 476
HpaII	CCGG	5 cut(s)	35, 44, 53, 205, 398
HphI	GGTGA	1 cut(s)	508
Hpy188I	TCNGA	4 cut(s)	295, 304, 390, 433
Hpy188III	TCNNGA	3 cut(s)	110, 265, 473
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	299, 397
HpyCH4III	ACNGT	2 cut(s)	163, 428
HpyCH4IV	ACGT	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	76
Hsp92I	GRCGYC	2 cut(s)	83, 245
HspAI	GCGC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	321, 547
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	4 cut(s)	66, 349, 406, 514
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	446
MluCI	AATT	2 cut(s)	97, 126
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	5 cut(s)	117, 151, 211, 305, 529
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	5 cut(s)	35, 44, 53, 205, 398
MspR9I	CCNGG	2 cut(s)	44, 87
MvaI	CCWGG	1 cut(s)	87
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	66, 514
NspV	TTCGAA	2 cut(s)	62, 136
PfeI	GAWTC	3 cut(s)	59, 469, 476
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	207
RsaI	GTAC	2 cut(s)	160, 227
RsaNI	GTAC	2 cut(s)	159, 226
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	44, 87
SetI	ASST	9 cut(s)	79, 143, 157, 222, 310, 351, 408, 442, 521
SfuI	TTCGAA	2 cut(s)	62, 136
SinI	GGWCC	1 cut(s)	207
Sse9I	AATT	2 cut(s)	97, 126
SsiI	CCGC	3 cut(s)	272, 325, 362
SspMI	CTAG	2 cut(s)	321, 547
StyD4I	CCNGG	2 cut(s)	42, 85
TaaI	ACNGT	2 cut(s)	163, 428
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	5, 62, 136, 381
TasI	AATT	2 cut(s)	97, 126
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	59, 469, 476
TseFI	GTSAC	2 cut(s)	66, 514
Tsp45I	GTSAC	2 cut(s)	66, 514
TspDTI	ATGAA	1 cut(s)	442
TspGWI	ACGGA	4 cut(s)	29, 85, 250, 294
VpaK11BI	GGWCC	1 cut(s)	207
XspI	CTAG	2 cut(s)	321, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.