Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014187

Physical Location & Seq

Genomic Coordinates Forward (+)

5261715 .. 5265189

Gene Structure 3475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G076700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCAGTCCGCGAATCGTCGGGTCAAAATCTGAACCCGACTCGGAGCACGCCCGATCGGCGCCCAAACTATCCTGACTATCGCGCTGGAACCCTAAACTCCGATATACCCCCTGATCCTCTCCTCCGACCGGGCTCCTTTATCGACGCCACGACCAGAACCTCCAATGGTCAAAACGTAAAAGAAGCCCAAAAGCCTCGAAGAGCGCCTGAGCAATCGAAATGTGCAGAGCCAGCTACGTCCGGGTCGGGTATGGAGAATCCAGATGGTGGGGCCGGGCGAGTCAAGCGAAAAGGGTTTGTGGAGCCTCTGGAGAACTGGTTGCCGCAAGGTTGGTCCGTGGAAGAAAGAGTTCGGGCCTCTGGTGCAACAGCTGGGAGTACAGATAGGTATTACGTTGATCCAGTTTCAGGCCGCCGGTTTCGGTCAAAGGTAGAAGTTCTTTACTTTCTGGAAACGGGAACAATTAAAAGGAAGAAAACAACAGAGAATGCCAGTGGTGACAAAACATCTGTAGAGGGTTCTGGAAGCCATAAACAAAAGAAGTCTAGCACAAAGCCGAAGAGTTCTGCTTTGAACTTTGATTTTGTCAATGTGCCTGAGAACGTCGTATGGGTTCTTACGGACTCTTCTGCAGGGTCCTGGACACCCTTTATTGGTAACAAAGAGGTGCCTGAATCTACTACACAAGAATGGGCAGCTGCATTCACATCTGCCACATCCCGAAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005730 GO:0005731 GO:0008327 GO:0010369 GO:0010370 GO:0019899 GO:0030874 GO:0031974 GO:0031981 GO:0032991 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043621 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

245

Amino Acids

26.71

Weight (kDa)

9.56

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46580 AT5G59380
fragaria_vesca	FvH4_3g36180
malus_domestica	MD03G1092700.v1.1 MD11G1107500.v1.1
prunus_persica	Prupe.6G076700_v2.0.a1
pyrus_communis	pycom03g07410
rosa_chinensis	RchiOBHm_Chr5g0064931
rosa_laevigata	RLG00000035743
rosa_multiflora	Rmu_sc0003352.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016390
rosa_rugosa	Rorug05G0366700
rosa_samantha	Rh5AG425200 Rh5BG440000 Rh5CG462700 Rh5DG453200
rosa_wichuraiana	Rw5G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	60, 670
AccB7I	CCANNNNNTGG	1 cut(s)	269
AccII	CGCG	2 cut(s)	12, 84
AciI	CCGC	3 cut(s)	10, 326, 415
AclWI	GGATC	2 cut(s)	110, 395
AcyI	GRCGYC	2 cut(s)	61, 147
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	4 cut(s)	130, 269, 410, 656
AgsI	TTSAA	1 cut(s)	577
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	3 cut(s)	236, 374, 701
AluI	AGCT	3 cut(s)	236, 374, 701
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	2 cut(s)	110, 395
AoxI	GGCC	3 cut(s)	273, 357, 412
ApeKI	GCWGC	2 cut(s)	698, 701
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	3 cut(s)	63, 86, 208
AspS9I	GGNCC	4 cut(s)	273, 336, 357, 639
AsuC2I	CCSGG	3 cut(s)	132, 244, 277
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	336, 639
BanI	GGYRCC	2 cut(s)	60, 670
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	688, 710
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	643
BcnI	CCSGG	3 cut(s)	132, 244, 277
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	2 cut(s)	513, 633
BfoI	RGCGCY	2 cut(s)	64, 209
BglI	GCCNNNNNGGC	1 cut(s)	58
BisI	GCNGC	4 cut(s)	326, 415, 699, 702
BlsI	GCNGC	4 cut(s)	327, 416, 700, 703
Bme1390I	CCNGG	4 cut(s)	132, 244, 277, 643
Bme18I	GGWCC	2 cut(s)	336, 639
BmgT120I	GGNCC	4 cut(s)	273, 336, 357, 639
BmiI	GGNNCC	7 cut(s)	62, 91, 136, 274, 306, 640, 672
BmrFI	CCNGG	4 cut(s)	132, 244, 277, 643
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	210
BpuMI	CCSGG	3 cut(s)	132, 244, 277
BsaHI	GRCGYC	2 cut(s)	61, 147
BsaJI	CCNNGG	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 269, 410, 656
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	3 cut(s)	323, 404, 495
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	719
BseLI	CCNNNNNNNGG	4 cut(s)	130, 269, 410, 656
BseMII	CTCAG	2 cut(s)	201, 591
BseNI	ACTGG	3 cut(s)	323, 404, 495
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	688, 710
BseYI	CCCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	246
Bsh1236I	CGCG	2 cut(s)	12, 84
Bsh1285I	CGRYCG	2 cut(s)	58, 131
BshFI	GGCC	3 cut(s)	275, 359, 414
BshNI	GGYRCC	2 cut(s)	60, 670
BsiEI	CGRYCG	2 cut(s)	58, 131
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	131, 243, 276, 418
BslI	CCNNNNNNNGG	4 cut(s)	130, 269, 410, 656
BsmI	GAATGC	2 cut(s)	496, 704
BsnI	GGCC	3 cut(s)	275, 359, 414
Bsp1286I	GDGCHC	2 cut(s)	50, 137
Bsp143I	GATC	3 cut(s)	55, 115, 400
BspACI	CCGC	3 cut(s)	10, 326, 415
BspANI	GGCC	3 cut(s)	275, 359, 414
BspCNI	CTCAG	2 cut(s)	202, 592
BspFNI	CGCG	2 cut(s)	12, 84
BspLI	GGNNCC	7 cut(s)	62, 91, 136, 274, 306, 640, 672
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	2 cut(s)	110, 395
BspQI	GCTCTTC	1 cut(s)	196
BspT107I	GGYRCC	2 cut(s)	60, 670
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	323, 404, 495
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	3 cut(s)	55, 115, 400
BssNI	GRCGYC	2 cut(s)	61, 147
Bst2UI	CCWGG	1 cut(s)	643
Bst6I	CTCTTC	3 cut(s)	196, 557, 634
BstACI	GRCGYC	2 cut(s)	61, 147
BstC8I	GCNNGC	2 cut(s)	50, 234
BstDEI	CTNAG	2 cut(s)	210, 600
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	719
BstFNI	CGCG	2 cut(s)	12, 84
BstH2I	RGCGCY	2 cut(s)	64, 209
BstHHI	GCGC	3 cut(s)	63, 86, 208
BstKTI	GATC	3 cut(s)	58, 118, 403
BstMBI	GATC	3 cut(s)	55, 115, 400
BstMCI	CGRYCG	2 cut(s)	58, 131
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 233, 286, 365
BstNI	CCWGG	1 cut(s)	643
BstSCI	CCNGG	4 cut(s)	130, 242, 275, 641
BstSFI	CTRYAG	2 cut(s)	513, 633
BstUI	CGCG	2 cut(s)	12, 84
BstV1I	GCAGC	2 cut(s)	688, 710
BsuRI	GGCC	3 cut(s)	275, 359, 414
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	719
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	50, 234
CfoI	GCGC	3 cut(s)	63, 86, 208
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	4 cut(s)	273, 336, 357, 639
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	381
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	2 cut(s)	210, 600
DinI	GGCGCC	1 cut(s)	62
DpnI	GATC	3 cut(s)	57, 117, 402
DpnII	GATC	3 cut(s)	55, 115, 400
Eam1104I	CTCTTC	3 cut(s)	196, 557, 634
EarI	CTCTTC	3 cut(s)	196, 557, 634
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	336, 639
EcoO109I	RGGNCCY	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	641
EcoT38I	GRGCYC	1 cut(s)	137
EgeI	GGCGCC	1 cut(s)	62
EheI	GGCGCC	1 cut(s)	62
FaiI	YATR	4 cut(s)	107, 254, 534, 613
Fnu4HI	GCNGC	4 cut(s)	326, 415, 699, 702
FokI	GGATG	1 cut(s)	706
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	4 cut(s)	326, 415, 699, 702
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	3 cut(s)	62, 85, 207
GluI	GCNGC	4 cut(s)	326, 415, 699, 702
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	2 cut(s)	64, 209
HaeIII	GGCC	3 cut(s)	275, 359, 414
HapII	CCGG	4 cut(s)	131, 243, 276, 418
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	3 cut(s)	63, 86, 208
Hin1I	GRCGYC	2 cut(s)	61, 147
Hin6I	GCGC	3 cut(s)	61, 84, 206
HinP1I	GCGC	3 cut(s)	61, 84, 206
HinfI	GANTC	6 cut(s)	14, 40, 259, 282, 626, 677
HpaII	CCGG	4 cut(s)	131, 243, 276, 418
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	4 cut(s)	33, 45, 103, 128
Hpy188III	TCNNGA	6 cut(s)	74, 263, 311, 452, 525, 723
Hpy99I	CGWCG	3 cut(s)	22, 149, 611
HpyCH4IV	ACGT	4 cut(s)	177, 239, 396, 606
HpyCH4V	TGCA	4 cut(s)	227, 368, 635, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 233, 286, 365
HpyF3I	CTNAG	2 cut(s)	210, 600
HpySE526I	ACGT	4 cut(s)	177, 239, 396, 606
Hsp92I	GRCGYC	2 cut(s)	61, 147
HspAI	GCGC	3 cut(s)	61, 84, 206
KasI	GGCGCC	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	55, 115, 400
LguI	GCTCTTC	1 cut(s)	196
LmnI	GCTCC	3 cut(s)	45, 140, 304
Lsp1109I	GCAGC	2 cut(s)	688, 710
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	4 cut(s)	177, 239, 396, 606
MaeIII	GTNAC	2 cut(s)	500, 659
MalI	GATC	3 cut(s)	57, 117, 402
MboI	GATC	3 cut(s)	55, 115, 400
MboII	GAAGA	5 cut(s)	213, 356, 487, 574, 621
MhlI	GDGCHC	2 cut(s)	50, 137
MluCI	AATT	1 cut(s)	465
Mly113I	GGCGCC	1 cut(s)	61
MlyI	GAGTC	3 cut(s)	34, 291, 620
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	129, 134, 172, 207, 318, 370, 511, 661
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	691
MspA1I	CMGCKG	2 cut(s)	374, 701
MspI	CCGG	4 cut(s)	131, 243, 276, 418
MspR9I	CCNGG	4 cut(s)	132, 244, 277, 643
Mva1269I	GAATGC	2 cut(s)	496, 704
MvaI	CCWGG	1 cut(s)	643
MvnI	CGCG	2 cut(s)	12, 84
MwoI	GCNNNNNNNGC	4 cut(s)	58, 233, 286, 365
NarI	GGCGCC	1 cut(s)	61
NciI	CCSGG	3 cut(s)	132, 244, 277
NdeII	GATC	3 cut(s)	55, 115, 400
NlaIV	GGNNCC	7 cut(s)	62, 91, 136, 274, 306, 640, 672
NmuCI	GTSAC	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	196
PctI	GAATGC	2 cut(s)	496, 704
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	14, 259, 677
PflMI	CCANNNNNTGG	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	641
PkrI	GCNGC	4 cut(s)	327, 416, 700, 703
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	3 cut(s)	34, 290, 620
PluTI	GGCGCC	1 cut(s)	64
PpsI	GAGTC	3 cut(s)	34, 290, 620
PpuMI	RGGWCCY	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	641
PspN4I	GGNNCC	7 cut(s)	62, 91, 136, 274, 306, 640, 672
PspPI	GGNCC	4 cut(s)	273, 336, 357, 639
PspPPI	RGGWCCY	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	637
PvuI	CGATCG	1 cut(s)	58
PvuII	CAGCTG	2 cut(s)	374, 701
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	691
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	326, 415, 699, 702
Sau3AI	GATC	3 cut(s)	55, 115, 400
Sau96I	GGNCC	4 cut(s)	273, 336, 357, 639
SchI	GAGTC	3 cut(s)	34, 291, 620
ScrFI	CCNGG	4 cut(s)	132, 244, 277, 643
SduI	GDGCHC	2 cut(s)	50, 137
SfcI	CTRYAG	2 cut(s)	513, 633
SfoI	GGCGCC	1 cut(s)	62
SinI	GGWCC	2 cut(s)	336, 639
SmiMI	CAYNNNNRTG	1 cut(s)	691
Sse9I	AATT	1 cut(s)	465
SsiI	CCGC	3 cut(s)	10, 326, 415
SspDI	GGCGCC	1 cut(s)	60
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	4 cut(s)	130, 242, 275, 641
TaiI	ACGT	4 cut(s)	180, 242, 399, 609
TaqI	TCGA	3 cut(s)	144, 199, 218
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	1 cut(s)	465
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	2 cut(s)	328, 417
TfiI	GAWTC	3 cut(s)	14, 259, 677
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	2 cut(s)	698, 701
Tsp45I	GTSAC	1 cut(s)	500
TspGWI	ACGGA	2 cut(s)	328, 638
TspRI	CASTG	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	336, 639
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.