Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014187

Physical Location & Seq

Genomic Coordinates Forward (+)

23952132 .. 23953707

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCAGATTCTGTGGCCGGCGATTTCCCTCCCGATCCACTTCTCGCCTCCGGAGCCTTCATCTCCTCCGCCGGTGACGGAACCCTAGACAGTAGTGCGAAACGACGACCGATTCAGGGAGGAATCGGAATTTCTGGTTCGGGAGAGAGCGTACGCATCGGGATGGCTAACGGCACTGATCAGGTGAATCATCAGACGGAATCGAAGTCGCGGAAGCGTGCGGCGCCTGGAGATAATTGGTTGCCTCCTGGTTGGAGAGTTGAAGATAAGATTCGAACTTCCGGTGCCACAGCTGGTTCGGTGGATAAGTACTATTACGAACCAAATACAGGACGTAAGTTTCGGTCCAGGACTGAGGTGCTGTACTACTTGGAACATGGAACTTCTAAAAGAGGCACCAAGAAAGCTGAGAATACATATTTCAATCCAGACCATTTTGAAGGCCAAGGAAGCAATAGAGTCACCAGAACCGCTACAGTGCCTCCACCTCCGCCACCGCCATTGGACTTTGATTTTAAGAATCCACCAGACAAGGTAAGCTGGTCTATGGCAAACGCAGGAGAAGAAGGTTGGATACCTAATATTGGGGACGTCAAGGTTCAAGACTCAGTGAGACGAGATTGGAGCACTGCGTTTACCTTTATCACAAGCCGAAACCCTAGTAAAGTGTCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005730 GO:0005731 GO:0008327 GO:0010369 GO:0010370 GO:0019899 GO:0030874 GO:0031974 GO:0031981 GO:0032991 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043621 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

225

Amino Acids

24.45

Weight (kDa)

9.07

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	73 - 176	8.2e-17	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46580 AT5G59380
fragaria_vesca	FvH4_3g36180
malus_domestica	MD03G1092700.v1.1 MD11G1107500.v1.1
prunus_persica	Prupe.6G076700_v2.0.a1
pyrus_communis	pycom03g07410
rosa_chinensis	RchiOBHm_Chr5g0064931
rosa_laevigata	RLG00000035743
rosa_multiflora	Rmu_sc0003352.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016390
rosa_rugosa	Rorug05G0366700
rosa_samantha	Rh5AG425200 Rh5BG440000 Rh5CG462700 Rh5DG453200
rosa_wichuraiana	Rw5G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	594
AccB1I	GGYRCC	3 cut(s)	223, 284, 395
AccII	CGCG	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	6 cut(s)	69, 211, 221, 471, 491, 497
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	129
AcyI	GRCGYC	2 cut(s)	224, 591
AfaI	GTAC	3 cut(s)	153, 311, 365
AfiI	CCNNNNNNNGG	3 cut(s)	116, 329, 584
AgsI	TTSAA	4 cut(s)	263, 424, 440, 602
AjnI	CCWGG	3 cut(s)	226, 247, 347
AluBI	AGCT	3 cut(s)	293, 407, 540
AluI	AGCT	3 cut(s)	293, 407, 540
Alw21I	GWGCWC	1 cut(s)	629
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	15, 442
ApoI	RAATTY	1 cut(s)	129
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	3 cut(s)	86, 196, 454
AsuII	TTCGAA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	345
BanI	GGYRCC	3 cut(s)	223, 284, 395
BarI	GAAGNNNNNNTAC	2 cut(s)	558, 590
Bbv12I	GWGCWC	1 cut(s)	629
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	3 cut(s)	228, 249, 349
BciVI	GTATCC	1 cut(s)	567
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	2 cut(s)	86, 660
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	3 cut(s)	228, 249, 349
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	5 cut(s)	55, 82, 225, 286, 397
BmrFI	CCNGG	3 cut(s)	228, 249, 349
BmsI	GCATC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	274
BsaHI	GRCGYC	2 cut(s)	224, 591
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	2 cut(s)	50, 281
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 466, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 329, 584
Bse118I	RCCGGY	2 cut(s)	17, 71
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	3 cut(s)	228, 249, 349
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	116, 329, 584
BseMII	CTCAG	3 cut(s)	345, 399, 621
BseRI	GAGGAG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	17, 444
BshNI	GGYRCC	3 cut(s)	223, 284, 395
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	629
BsiSI	CCGG	4 cut(s)	18, 51, 72, 282
BsiWI	CGTACG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	3 cut(s)	116, 329, 584
BsmAI	GTCTC	1 cut(s)	607
BsmBI	CGTCTC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	17, 444
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	34, 178
BspACI	CCGC	6 cut(s)	69, 211, 221, 471, 491, 497
BspANI	GGCC	2 cut(s)	17, 444
BspCNI	CTCAG	3 cut(s)	346, 400, 620
BspEI	TCCGGA	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	5 cut(s)	55, 82, 225, 286, 397
BspPI	GGATC	1 cut(s)	29
BspT104I	TTCGAA	1 cut(s)	274
BspT107I	GGYRCC	3 cut(s)	223, 284, 395
BsrFI	RCCGGY	2 cut(s)	17, 71
BssAI	RCCGGY	2 cut(s)	17, 71
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	2 cut(s)	34, 178
BssNI	GRCGYC	2 cut(s)	224, 591
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	3 cut(s)	228, 249, 349
Bst4CI	ACNGT	2 cut(s)	92, 478
BstACI	GRCGYC	2 cut(s)	224, 591
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	19, 219
BstDEI	CTNAG	3 cut(s)	354, 408, 607
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	37, 181
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	2 cut(s)	34, 178
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 223, 450
BstNI	CCWGG	3 cut(s)	228, 249, 349
BstSCI	CCNGG	3 cut(s)	226, 247, 347
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	17, 444
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	4 cut(s)	174, 483, 615, 627
Cac8I	GCNNGC	2 cut(s)	19, 219
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	2 cut(s)	17, 71
Cfr13I	GGNCC	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	152, 310, 364
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	9 cut(s)	17, 56, 167, 293, 407, 444, 540, 651, 674
CviKI_1	RGCY	9 cut(s)	17, 56, 167, 293, 407, 444, 540, 651, 674
CviQI	GTAC	3 cut(s)	152, 310, 364
DdeI	CTNAG	3 cut(s)	354, 408, 607
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	2 cut(s)	36, 180
DpnII	GATC	2 cut(s)	34, 178
EaeI	YGGCCR	1 cut(s)	15
EciI	GGCGGA	2 cut(s)	58, 480
Eco130I	CCWWGG	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	345
EcoRII	CCWGG	3 cut(s)	226, 247, 347
EcoT14I	CCWWGG	1 cut(s)	445
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	445
Esp3I	CGTCTC	1 cut(s)	607
FaeI	CATG	1 cut(s)	380
FaiI	YATR	3 cut(s)	378, 418, 548
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	86, 660
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	17, 444
HapII	CCGG	4 cut(s)	18, 51, 72, 282
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	2 cut(s)	224, 591
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	9 cut(s)	8, 112, 123, 187, 200, 271, 459, 520, 605
HpaII	CCGG	4 cut(s)	18, 51, 72, 282
HphI	GGTGA	3 cut(s)	86, 196, 454
Hpy166II	GTNNAC	1 cut(s)	636
Hpy188I	TCNGA	3 cut(s)	7, 128, 195
Hpy188III	TCNNGA	6 cut(s)	32, 51, 141, 160, 428, 602
Hpy8I	GTNNAC	1 cut(s)	636
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	67, 434, 560
HpyCH4III	ACNGT	2 cut(s)	92, 478
HpyCH4IV	ACGT	2 cut(s)	334, 591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 223, 450
HpyF3I	CTNAG	3 cut(s)	354, 408, 607
HpySE526I	ACGT	2 cut(s)	334, 591
Hsp92I	GRCGYC	2 cut(s)	224, 591
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	224
KasI	GGCGCC	1 cut(s)	223
Kpn2I	TCCGGA	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	34, 178
LmnI	GCTCC	2 cut(s)	53, 624
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	86, 660
MaeII	ACGT	2 cut(s)	334, 591
MaeIII	GTNAC	2 cut(s)	74, 460
MalI	GATC	2 cut(s)	36, 180
MboI	GATC	2 cut(s)	34, 178
MboII	GAAGA	2 cut(s)	275, 575
MhlI	GDGCHC	1 cut(s)	629
MluCI	AATT	2 cut(s)	129, 235
Mly113I	GGCGCC	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	468, 599
MmeI	TCCRAC	2 cut(s)	233, 551
MnlI	CCTC	9 cut(s)	39, 58, 76, 113, 255, 349, 386, 492, 498
MroI	TCCGGA	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	4 cut(s)	18, 51, 72, 282
MspR9I	CCNGG	3 cut(s)	228, 249, 349
MvaI	CCWGG	3 cut(s)	228, 249, 349
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	3 cut(s)	53, 223, 450
NaeI	GCCGGC	1 cut(s)	19
NarI	GGCGCC	1 cut(s)	224
NdeII	GATC	2 cut(s)	34, 178
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	5 cut(s)	55, 82, 225, 286, 397
NmuCI	GTSAC	2 cut(s)	74, 460
NspV	TTCGAA	1 cut(s)	274
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	7 cut(s)	8, 112, 123, 187, 200, 271, 520
Pfl23II	CGTACG	1 cut(s)	151
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	467, 599
PluTI	GGCGCC	1 cut(s)	227
PpsI	GAGTC	2 cut(s)	467, 599
Psp6I	CCWGG	3 cut(s)	226, 247, 347
PspGI	CCWGG	3 cut(s)	226, 247, 347
PspLI	CGTACG	1 cut(s)	151
PspN4I	GGNNCC	5 cut(s)	55, 82, 225, 286, 397
PspPI	GGNCC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	153, 311, 365
RsaNI	GTAC	3 cut(s)	152, 310, 364
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	34, 178
Sau96I	GGNCC	1 cut(s)	345
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	2 cut(s)	468, 599
ScrFI	CCNGG	3 cut(s)	228, 249, 349
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	474
SfoI	GGCGCC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	274
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	129, 235
SsiI	CCGC	6 cut(s)	69, 211, 221, 471, 491, 497
SspDI	GGCGCC	1 cut(s)	223
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	2 cut(s)	86, 660
StyD4I	CCNGG	3 cut(s)	226, 247, 347
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	92, 478
TaiI	ACGT	2 cut(s)	337, 594
TaqI	TCGA	2 cut(s)	203, 274
TaqII	GACCGA	2 cut(s)	124, 333
TasI	AATT	2 cut(s)	129, 235
TatI	WGTACW	2 cut(s)	309, 363
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	7 cut(s)	8, 112, 123, 187, 200, 271, 520
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	4 cut(s)	181, 483, 615, 634
TseFI	GTSAC	2 cut(s)	74, 460
Tsp45I	GTSAC	2 cut(s)	74, 460
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	2 cut(s)	93, 212
TspRI	CASTG	4 cut(s)	181, 483, 615, 634
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	1 cut(s)	129
XspI	CTAG	2 cut(s)	86, 660
ZraI	GACGTC	1 cut(s)	592
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.