Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014187

Physical Location & Seq

Genomic Coordinates Forward (+)

30991390 .. 30994825

Gene Structure 3436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCACTCCCCGGAGCTTCCGGCAAGGATCTGAACCCGAATCCGACTCCACCTGACGGAGCCCTGGAAGGCTCCGATCCCCTCCTCCAATCGGGAGCCTTCATCGACGGCTCAACCATGGAAGAAAGTCAAGAAGTCGGAAAGGCTCAATCGAACGGCACGGCGGACGGGTCGGCGGGTCGGGCCAAGGCGAAAGGTTCGGATCCTATGTCGATGGATTGGTTGCCGGCCGGTTGGAGAGTCGAGTATAAAGTAAGGAGCTCCGGTGCCACAGCTGGAAGTACAGATAGGTATTACCATGATCCAGTGTCAGGCCGTCGATTTCGGTCAAAGAAAGAAGTCCTTCACTTTCTGGAAACAGGAACGCCCAAGAAGAACACTAATTCTGACAAAACTACCGTGGAAAGTTCTGCAAGCAAAAGGCAAAGGAAGTCTAGCACAAAGCCCAGTCCTGCTGTGAACTTTGATTTTTTTGATGTGCCTGCGAAGGTAGAATGGGTTCTCACAGACTCCTCTCAGTGGACTTGGACACCCTTTATCGGTGATCAAAAGGTGCCTGAGTCCACTGCCAAAGAATGGGCTACTGCGTTTACAGTATTCACATCCAGCAATAGTGGCCGTACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005730 GO:0005731 GO:0008327 GO:0010369 GO:0010370 GO:0019899 GO:0030874 GO:0031974 GO:0031981 GO:0032991 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043621 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

210

Amino Acids

22.57

Weight (kDa)

7.89

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	73 - 123	1e-11	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46580 AT5G59380
fragaria_vesca	FvH4_3g36180
malus_domestica	MD03G1092700.v1.1 MD11G1107500.v1.1
prunus_persica	Prupe.6G076700_v2.0.a1
pyrus_communis	pycom03g07410
rosa_chinensis	RchiOBHm_Chr5g0064931
rosa_laevigata	RLG00000035743
rosa_multiflora	Rmu_sc0003352.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016390
rosa_rugosa	Rorug05G0366700
rosa_samantha	Rh5AG425200 Rh5BG440000 Rh5CG462700 Rh5DG453200
rosa_wichuraiana	Rw5G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	266, 553
AccB7I	CCANNNNNTGG	1 cut(s)	576
AciI	CCGC	2 cut(s)	164, 176
AclWI	GGATC	5 cut(s)	36, 71, 197, 210, 296
AcoI	YGGCCR	2 cut(s)	228, 616
AfaI	GTAC	2 cut(s)	283, 622
AfiI	CCNNNNNNNGG	6 cut(s)	56, 91, 311, 519, 539, 576
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	17, 261, 275
AluI	AGCT	3 cut(s)	17, 261, 275
Alw21I	GWGCWC	1 cut(s)	263
AlwI	GGATC	5 cut(s)	36, 71, 197, 210, 296
AoxI	GGCC	4 cut(s)	183, 228, 313, 616
Asp700I	GAANNNNTTC	2 cut(s)	342, 498
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	554
BamHI	GGATCC	1 cut(s)	202
BanI	GGYRCC	2 cut(s)	266, 553
BanII	GRGCYC	2 cut(s)	64, 263
Bbv12I	GWGCWC	1 cut(s)	263
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	5 cut(s)	124, 172, 177, 300, 603
BciT130I	CCWGG	1 cut(s)	65
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	12, 65
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	6 cut(s)	61, 73, 97, 204, 268, 555
BmrFI	CCNGG	2 cut(s)	12, 65
BmrI	ACTGGG	1 cut(s)	441
BmuI	ACTGGG	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	5 cut(s)	10, 63, 117, 186, 399
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 91, 311, 519, 539, 576
Bse118I	RCCGGY	2 cut(s)	226, 230
Bse1I	ACTGG	2 cut(s)	305, 447
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	5 cut(s)	10, 63, 117, 186, 399
BseGI	GGATG	1 cut(s)	602
BseLI	CCNNNNNNNGG	6 cut(s)	56, 91, 311, 519, 539, 576
BseMII	CTCAG	2 cut(s)	530, 549
BseNI	ACTGG	2 cut(s)	305, 447
BseRI	GAGGAG	2 cut(s)	74, 502
BseX3I	CGGCCG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	185, 230, 315, 618
BshNI	GGYRCC	2 cut(s)	266, 553
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	5 cut(s)	12, 21, 227, 231, 264
BslI	CCNNNNNNNGG	6 cut(s)	56, 91, 311, 519, 539, 576
BsnI	GGCC	4 cut(s)	185, 230, 315, 618
Bsp1286I	GDGCHC	2 cut(s)	64, 263
Bsp143I	GATC	5 cut(s)	28, 76, 202, 301, 544
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	2 cut(s)	164, 176
BspANI	GGCC	4 cut(s)	185, 230, 315, 618
BspCNI	CTCAG	2 cut(s)	529, 550
BspLI	GGNNCC	6 cut(s)	61, 73, 97, 204, 268, 555
BspPI	GGATC	5 cut(s)	36, 71, 197, 210, 296
BspT107I	GGYRCC	2 cut(s)	266, 553
BsrFI	RCCGGY	2 cut(s)	226, 230
BsrI	ACTGG	2 cut(s)	305, 447
BssAI	RCCGGY	2 cut(s)	226, 230
BssECI	CCNNGG	5 cut(s)	10, 63, 117, 186, 399
BssMI	GATC	5 cut(s)	28, 76, 202, 301, 544
BssT1I	CCWWGG	2 cut(s)	117, 186
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	400, 595
BstC8I	GCNNGC	3 cut(s)	228, 415, 483
BstDEI	CTNAG	2 cut(s)	516, 558
BstDSI	CCRYGG	2 cut(s)	117, 399
BstF5I	GGATG	1 cut(s)	602
BstKTI	GATC	5 cut(s)	31, 79, 205, 304, 547
BstMBI	GATC	5 cut(s)	28, 76, 202, 301, 544
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 615
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	10, 63
BstX2I	RGATCY	2 cut(s)	28, 202
BstYI	RGATCY	2 cut(s)	28, 202
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	185, 230, 315, 618
BtgI	CCRYGG	2 cut(s)	117, 399
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	312, 524, 564
Cac8I	GCNNGC	3 cut(s)	228, 415, 483
Cfr10I	RCCGGY	2 cut(s)	226, 230
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	282, 621
CviAII	CATG	2 cut(s)	118, 299
CviQI	GTAC	2 cut(s)	282, 621
DdeI	CTNAG	2 cut(s)	516, 558
DpnI	GATC	5 cut(s)	30, 78, 204, 303, 546
DpnII	GATC	5 cut(s)	28, 76, 202, 301, 544
EaeI	YGGCCR	2 cut(s)	228, 616
EagI	CGGCCG	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	117, 186
Eco24I	GRGCYC	2 cut(s)	64, 263
Eco52I	CGGCCG	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	2 cut(s)	117, 186
EcoT38I	GRGCYC	2 cut(s)	64, 263
ErhI	CCWWGG	2 cut(s)	117, 186
FaeI	CATG	2 cut(s)	121, 302
FaiI	YATR	4 cut(s)	119, 209, 249, 300
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	2 cut(s)	117, 298
FauI	CCCGC	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	544
FokI	GGATG	1 cut(s)	589
FriOI	GRGCYC	2 cut(s)	64, 263
FspBI	CTAG	1 cut(s)	435
HaeIII	GGCC	4 cut(s)	185, 230, 315, 618
HapII	CCGG	5 cut(s)	12, 21, 227, 231, 264
Hin1II	CATG	2 cut(s)	121, 302
HinfI	GANTC	5 cut(s)	40, 46, 240, 509, 560
HpaII	CCGG	5 cut(s)	12, 21, 227, 231, 264
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	4 cut(s)	460, 522, 564, 591
Hpy188I	TCNGA	6 cut(s)	33, 45, 76, 140, 202, 388
Hpy188III	TCNNGA	3 cut(s)	93, 131, 353
Hpy8I	GTNNAC	4 cut(s)	460, 522, 564, 591
Hpy99I	CGWCG	2 cut(s)	110, 321
HpyAV	CCTTC	4 cut(s)	62, 109, 353, 481
HpyCH4III	ACNGT	2 cut(s)	400, 595
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 615
HpyF3I	CTNAG	2 cut(s)	516, 558
Hsp92II	CATG	2 cut(s)	121, 302
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	5 cut(s)	28, 76, 202, 301, 544
LmnI	GCTCC	6 cut(s)	14, 59, 77, 95, 258, 266
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	5 cut(s)	30, 78, 204, 303, 546
MboI	GATC	5 cut(s)	28, 76, 202, 301, 544
MboII	GAAGA	2 cut(s)	134, 385
MflI	RGATCY	2 cut(s)	28, 202
MhlI	GDGCHC	2 cut(s)	64, 263
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	4 cut(s)	40, 249, 503, 569
MmeI	TCCRAC	3 cut(s)	68, 118, 215
MnlI	CCTC	3 cut(s)	92, 95, 523
MroNI	GCCGGC	1 cut(s)	226
MroXI	GAANNNNTTC	2 cut(s)	342, 498
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	5 cut(s)	12, 21, 227, 231, 264
MspR9I	CCNGG	2 cut(s)	12, 65
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	182, 615
NaeI	GCCGGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	28, 76, 202, 301, 544
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	121, 302
NlaIV	GGNNCC	6 cut(s)	61, 73, 97, 204, 268, 555
NmuCI	GTSAC	1 cut(s)	3
PdiI	GCCGGC	1 cut(s)	228
PdmI	GAANNNNTTC	2 cut(s)	342, 498
PfeI	GAWTC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	576
PleI	GAGTC	4 cut(s)	40, 248, 503, 568
PpsI	GAGTC	4 cut(s)	40, 248, 503, 568
Psp124BI	GAGCTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	6 cut(s)	61, 73, 97, 204, 268, 555
PspPI	GGNCC	1 cut(s)	183
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PsuI	RGATCY	2 cut(s)	28, 202
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	283, 622
RsaNI	GTAC	2 cut(s)	282, 621
SacI	GAGCTC	1 cut(s)	263
Sau3AI	GATC	5 cut(s)	28, 76, 202, 301, 544
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	4 cut(s)	40, 249, 503, 569
ScrFI	CCNGG	2 cut(s)	12, 65
SduI	GDGCHC	2 cut(s)	64, 263
SetI	ASST	8 cut(s)	19, 55, 199, 263, 277, 293, 492, 555
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	2 cut(s)	164, 176
SspMI	CTAG	1 cut(s)	435
SstI	GAGCTC	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	10, 63
StyI	CCWWGG	2 cut(s)	117, 186
TaaI	ACNGT	2 cut(s)	400, 595
TaqI	TCGA	5 cut(s)	105, 152, 212, 243, 319
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	382
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	3 cut(s)	312, 524, 571
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	3 cut(s)	312, 524, 571
Van91I	CCANNNNNTGG	1 cut(s)	576
XmnI	GAANNNNTTC	2 cut(s)	342, 498
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.