Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014187

Physical Location & Seq

Genomic Coordinates Forward (+)

9481483 .. 9484854

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1107500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCATTCCCCGAATCGTCGGGTCGAAATCTGCACCGGGATCGACGCCCGAACTTTTCCGACCACCGCGCCGGAACCCTACACTCCGATTTACCCCCTGATCCTCTCCTCCGATCGGGCTCCTTCATTGACGCCACCACCACCACCACCTCCAATGGCCGAACCCCAAACCAAACCAAAAAGCCCCACAAGGCGCCTCAGCAGCCGAACCGTTCGGATCCCGGGACGGGCCCGGATAGCACGGAGGGAGGGGCTGGGCGGGTCAAGCGAAAAGCGTTTACTGATTCTATGGAGAGCTGGTTGCCGCAGGGCTGGTCCGTGCAGGAGAAAGTTCGGAGCTCTGGTGCAACAGCTGGAAGTACAGATAGGTATTACATTGATCCAGTCTCAGGTCGCCGGTTTCGGTCAAAGATAGAAGTTCTTCGCTTTCTGGAAACGGGAACGGCTAAAAAGGCAAAAACAGAGAACGCTAGCGTTGACAAAACATCTGTTGAGGGTTCTGGAAGCCAAAAAAAGAAGTCTAGCACAAAACCGAAAACTTCTGCGTTGAACTTTGATTATGACAATGTGCCCGAGAAGGTGGAATGGGTTCTTACAGCCTCTTCCGGAGAGTCCTGGACACCCTTTATTGATAACAAAAAGGTCCCTGAATCTACTTCAAAAGAATGGGCTGCTGCATTCGCATTAGTTCCATCCAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005730 GO:0005731 GO:0008327 GO:0010369 GO:0010370 GO:0019899 GO:0030874 GO:0031974 GO:0031981 GO:0032991 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043621 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

235

Amino Acids

25.64

Weight (kDa)

9.82

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	94 - 161	1.5e-12	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46580 AT5G59380
fragaria_vesca	FvH4_3g36180
malus_domestica	MD03G1092700.v1.1 MD11G1107500.v1.1
prunus_persica	Prupe.6G076700_v2.0.a1
pyrus_communis	pycom03g07410
rosa_chinensis	RchiOBHm_Chr5g0064931
rosa_laevigata	RLG00000035743
rosa_multiflora	Rmu_sc0003352.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016390
rosa_rugosa	Rorug05G0366700
rosa_samantha	Rh5AG425200 Rh5BG440000 Rh5CG462700 Rh5DG453200
rosa_wichuraiana	Rw5G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccII	CGCG	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	605
AciI	CCGC	3 cut(s)	67, 259, 305
AclWI	GGATC	5 cut(s)	48, 95, 212, 225, 374
AcoI	YGGCCR	1 cut(s)	157
AcyI	GRCGYC	3 cut(s)	46, 132, 194
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	3 cut(s)	115, 227, 389
AgsI	TTSAA	2 cut(s)	550, 660
AjnI	CCWGG	1 cut(s)	614
AluBI	AGCT	3 cut(s)	297, 339, 353
AluI	AGCT	3 cut(s)	297, 339, 353
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	5 cut(s)	48, 95, 212, 225, 374
Ama87I	CYCGRG	2 cut(s)	221, 572
Aor13HI	TCCGGA	1 cut(s)	605
AoxI	GGCC	2 cut(s)	157, 229
ApaI	GGGCCC	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	202, 671, 674
Asp700I	GAANNNNTTC	2 cut(s)	420, 588
AspLEI	GCGC	2 cut(s)	71, 196
AspS9I	GGNCC	4 cut(s)	229, 230, 315, 643
AsuC2I	CCSGG	4 cut(s)	38, 222, 223, 233
AsuNHI	GCTAGC	1 cut(s)	470
AvaI	CYCGRG	2 cut(s)	221, 572
AvaII	GGWCC	2 cut(s)	315, 643
BaeGI	GKGCMC	2 cut(s)	233, 573
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	3 cut(s)	122, 233, 341
Bbv12I	GWGCWC	1 cut(s)	341
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	214, 658, 661
BccI	CCATC	1 cut(s)	700
BceAI	ACGGC	1 cut(s)	459
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	1 cut(s)	616
BcnI	CCSGG	4 cut(s)	38, 222, 223, 233
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	2 cut(s)	471, 522
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	4 cut(s)	203, 305, 672, 675
BlsI	GCNGC	4 cut(s)	204, 306, 673, 676
Bme1390I	CCNGG	5 cut(s)	38, 222, 223, 233, 616
Bme18I	GGWCC	2 cut(s)	315, 643
BmeT110I	CYCGRG	2 cut(s)	221, 572
BmgT120I	GGNCC	4 cut(s)	229, 230, 315, 643
BmiI	GGNNCC	6 cut(s)	76, 121, 195, 219, 231, 645
BmrFI	CCNGG	5 cut(s)	38, 222, 223, 233, 616
BmtI	GCTAGC	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	198
BpuMI	CCSGG	4 cut(s)	38, 222, 223, 233
BsaHI	GRCGYC	3 cut(s)	46, 132, 194
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 227, 389
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	383
BseAI	TCCGGA	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	616
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	692
BseLI	CCNNNNNNNGG	3 cut(s)	115, 227, 389
BseMII	CTCAG	2 cut(s)	212, 402
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	2 cut(s)	233, 573
BseXI	GCAGC	3 cut(s)	214, 658, 661
BseYI	CCCAGC	1 cut(s)	254
BsgI	GTGCAG	2 cut(s)	17, 341
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	159, 231
BshNI	GGYRCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	341
BsiHKCI	CYCGRG	2 cut(s)	221, 572
BsiSI	CCGG	6 cut(s)	37, 72, 222, 233, 397, 606
BslFI	GGGAC	2 cut(s)	238, 629
BslI	CCNNNNNNNGG	3 cut(s)	115, 227, 389
BsmAI	GTCTC	1 cut(s)	391
BsmFI	GGGAC	2 cut(s)	238, 629
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	2 cut(s)	159, 231
BsoBI	CYCGRG	2 cut(s)	221, 572
Bsp120I	GGGCCC	1 cut(s)	229
Bsp1286I	GDGCHC	4 cut(s)	122, 233, 341, 573
Bsp13I	TCCGGA	1 cut(s)	605
Bsp143I	GATC	5 cut(s)	40, 100, 113, 217, 379
BspACI	CCGC	3 cut(s)	67, 259, 305
BspANI	GGCC	2 cut(s)	159, 231
BspCNI	CTCAG	2 cut(s)	211, 401
BspEI	TCCGGA	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	6 cut(s)	76, 121, 195, 219, 231, 645
BspOI	GCTAGC	1 cut(s)	474
BspPI	GGATC	5 cut(s)	48, 95, 212, 225, 374
BspT107I	GGYRCC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	5 cut(s)	40, 100, 113, 217, 379
BssNI	GRCGYC	3 cut(s)	46, 132, 194
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	607
BstACI	GRCGYC	3 cut(s)	46, 132, 194
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	2 cut(s)	198, 388
BstF5I	GGATG	1 cut(s)	692
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	71, 196
BstKTI	GATC	5 cut(s)	43, 103, 116, 220, 382
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	5 cut(s)	40, 100, 113, 217, 379
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 237, 265, 452, 680
BstNI	CCWGG	1 cut(s)	616
BstSCI	CCNGG	5 cut(s)	36, 220, 221, 231, 614
BstSLI	GKGCMC	2 cut(s)	233, 573
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	214, 658, 661
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	159, 231
BtsCI	GGATG	1 cut(s)	692
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	2 cut(s)	71, 196
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	4 cut(s)	229, 230, 315, 643
Cfr9I	CCCGGG	1 cut(s)	221
CseI	GACGC	2 cut(s)	54, 140
Csp6I	GTAC	1 cut(s)	360
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	2 cut(s)	198, 388
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	5 cut(s)	42, 102, 115, 219, 381
DpnII	GATC	5 cut(s)	40, 100, 113, 217, 379
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
Ecl136II	GAGCTC	1 cut(s)	339
Eco24I	GRGCYC	3 cut(s)	122, 233, 341
Eco47I	GGWCC	2 cut(s)	315, 643
Eco53kI	GAGCTC	1 cut(s)	339
Eco88I	CYCGRG	2 cut(s)	221, 572
EcoICRI	GAGCTC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	614
EcoT38I	GRGCYC	3 cut(s)	122, 233, 341
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
FaiI	YATR	2 cut(s)	290, 561
FaqI	GGGAC	2 cut(s)	238, 629
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	203, 305, 672, 675
FokI	GGATG	1 cut(s)	679
FriOI	GRGCYC	3 cut(s)	122, 233, 341
Fsp4HI	GCNGC	4 cut(s)	203, 305, 672, 675
FspBI	CTAG	2 cut(s)	471, 522
GlaI	GCGC	2 cut(s)	70, 195
GluI	GCNGC	4 cut(s)	203, 305, 672, 675
GsaI	CCCAGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	159, 231
HapII	CCGG	6 cut(s)	37, 72, 222, 233, 397, 606
HgaI	GACGC	2 cut(s)	54, 140
HhaI	GCGC	2 cut(s)	71, 196
Hin1I	GRCGYC	3 cut(s)	46, 132, 194
Hin6I	GCGC	2 cut(s)	69, 194
HinP1I	GCGC	2 cut(s)	69, 194
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	14, 284, 611, 650
HpaII	CCGG	6 cut(s)	37, 72, 222, 233, 397, 606
Hpy166II	GTNNAC	2 cut(s)	279, 478
Hpy188I	TCNGA	5 cut(s)	61, 88, 113, 217, 336
Hpy188III	TCNNGA	3 cut(s)	431, 501, 606
Hpy8I	GTNNAC	2 cut(s)	279, 478
Hpy99I	CGWCG	2 cut(s)	22, 48
HpyAV	CCTTC	2 cut(s)	133, 571
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	4 cut(s)	34, 322, 347, 677
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 237, 265, 452, 680
HpyF3I	CTNAG	2 cut(s)	198, 388
Hsp92I	GRCGYC	3 cut(s)	46, 132, 194
HspAI	GCGC	2 cut(s)	69, 194
KasI	GGCGCC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	605
Kzo9I	GATC	5 cut(s)	40, 100, 113, 217, 379
LmnI	GCTCC	2 cut(s)	125, 336
Lsp1109I	GCAGC	3 cut(s)	214, 658, 661
MaeI	CTAG	2 cut(s)	471, 522
MalI	GATC	5 cut(s)	42, 102, 115, 219, 381
MboI	GATC	5 cut(s)	40, 100, 113, 217, 379
MboII	GAAGA	2 cut(s)	413, 594
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	4 cut(s)	122, 233, 341, 573
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	114, 119, 160, 207, 238, 242, 487, 610
MroI	TCCGGA	1 cut(s)	605
MroXI	GAANNNNTTC	2 cut(s)	420, 588
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	6 cut(s)	37, 72, 222, 233, 397, 606
MspR9I	CCNGG	5 cut(s)	38, 222, 223, 233, 616
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	616
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	5 cut(s)	202, 237, 265, 452, 680
NarI	GGCGCC	1 cut(s)	194
NciI	CCSGG	4 cut(s)	38, 222, 223, 233
NdeII	GATC	5 cut(s)	40, 100, 113, 217, 379
NheI	GCTAGC	1 cut(s)	470
NlaIV	GGNNCC	6 cut(s)	76, 121, 195, 219, 231, 645
PctI	GAATGC	1 cut(s)	677
PdmI	GAANNNNTTC	2 cut(s)	420, 588
PfeI	GAWTC	3 cut(s)	14, 284, 650
PfoI	TCCNGGA	1 cut(s)	614
PkrI	GCNGC	4 cut(s)	204, 306, 673, 676
Ple19I	CGATCG	1 cut(s)	116
PleI	GAGTC	1 cut(s)	619
PluTI	GGCGCC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	619
PpuMI	RGGWCCY	1 cut(s)	643
Psp124BI	GAGCTC	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	614
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	6 cut(s)	76, 121, 195, 219, 231, 645
PspOMI	GGGCCC	1 cut(s)	229
PspPI	GGNCC	4 cut(s)	229, 230, 315, 643
PspPPI	RGGWCCY	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	217
PvuI	CGATCG	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	341
SatI	GCNGC	4 cut(s)	203, 305, 672, 675
Sau3AI	GATC	5 cut(s)	40, 100, 113, 217, 379
Sau96I	GGNCC	4 cut(s)	229, 230, 315, 643
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	5 cut(s)	38, 222, 223, 233, 616
SduI	GDGCHC	4 cut(s)	122, 233, 341, 573
SetI	ASST	8 cut(s)	152, 299, 341, 355, 371, 394, 582, 645
SfoI	GGCGCC	1 cut(s)	195
SinI	GGWCC	2 cut(s)	315, 643
SmaI	CCCGGG	1 cut(s)	223
SsiI	CCGC	3 cut(s)	67, 259, 305
SspDI	GGCGCC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	471, 522
SstI	GAGCTC	1 cut(s)	341
StyD4I	CCNGG	5 cut(s)	36, 220, 221, 231, 614
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	25, 43
TaqII	GACCGA	1 cut(s)	393
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	3 cut(s)	14, 284, 650
TseI	GCWGC	3 cut(s)	202, 671, 674
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	2 cut(s)	257, 307
TspMI	CCCGGG	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	315, 643
XmaI	CCCGGG	1 cut(s)	221
XmnI	GAANNNNTTC	2 cut(s)	420, 588
XspI	CTAG	2 cut(s)	471, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.