Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014187

Physical Location & Seq

Genomic Coordinates Forward (+)

5925228 .. 5928433

Gene Structure 3206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07410.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGCCCAGCCCAACATTCAACATGCAGGCCTTGAGGCCCGCTCTTCATTTTTGGTCCAATTATGCTAAAAATTTAGGTACAATTAAGGCCCAACACCACCTACCCCTGTCTTATAAAACATATACAAACAGTCAAACCGGTCCTATTCATTTCTTAGCCCAGCACACAGACACATACCGCCCGATGTCAGTCCCCGAAGCATCGTGTCGGAATATAAACGCGGATCGACGCCCAAGCTTTTCCGACCACCGCGCCGGAACCCTACACTCCGATTCACCCCACGATCCTCTCCTCCGACCGGGCTCCTTCATAGACGCCACCACCACCGCAACAACCTCTAATGGCCGAACCCCAATCCAAACCAAAAATCCCCATAAAGCGCCGCAGCAATCGAACCGTTCGGAGCCCGGAGCCGGCGCCGAGAGCACGGAGGGAGGGGCGGGGCGTGCCAAGCGAAAAGGGGTATCGGAGCCGCTGGAGAACTGGTTGCCACAGGGTTGGTCCGTGCAGGAGAAAGTTCGGAGCTCTGGTTTAACGGCTGGATCTACAGATAGGTATTACTTTGATCCAGTCTCAGGTCGCCGGTTTCGGTCAAAGATAGAAGTTCTCCGCTTTCTTGAAACGGGAACAGCTAAAAAGGCAAAGACAGAGAATGCAAGTGCTGACAAAACATCTGTCGAGAGTTCTGGAAGCCAAAAACAAAAGAAGTCTAGCACGAAGCCAAAGAATTCTGCGTTGAACTTTGATTATACTGATGTGCCCGAGAAGGTGGAATGGGCTCTTACAGACTCTTCCGGACAGTCCTGGACACCCTTTATTGATAACAAAAAGGTCCCTGAATCTACATCAAAAGAATGGGCTGCTGCATTTGCATTAGTCCCATCCAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005730 GO:0005731 GO:0008327 GO:0010369 GO:0010370 GO:0019899 GO:0030874 GO:0031974 GO:0031981 GO:0032991 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043621 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

299

Amino Acids

32.83

Weight (kDa)

9.78

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46580 AT5G59380
fragaria_vesca	FvH4_3g36180
malus_domestica	MD03G1092700.v1.1 MD11G1107500.v1.1
prunus_persica	Prupe.6G076700_v2.0.a1
pyrus_communis	pycom03g07410
rosa_chinensis	RchiOBHm_Chr5g0064931
rosa_laevigata	RLG00000035743
rosa_multiflora	Rmu_sc0003352.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016390
rosa_rugosa	Rorug05G0366700
rosa_samantha	Rh5AG425200 Rh5BG440000 Rh5CG462700 Rh5DG453200
rosa_wichuraiana	Rw5G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	44
AccII	CGCG	2 cut(s)	224, 255
AccIII	TCCGGA	1 cut(s)	797
AciI	CCGC	9 cut(s)	42, 181, 224, 253, 330, 386, 443, 476, 613
AclWI	GGATC	4 cut(s)	234, 281, 553, 563
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	73, 730
AcyI	GRCGYC	3 cut(s)	232, 318, 420
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	3 cut(s)	301, 416, 578
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	22, 623, 742
AjnI	CCWGG	1 cut(s)	806
AluBI	AGCT	3 cut(s)	240, 528, 635
AluI	AGCT	3 cut(s)	240, 528, 635
Alw21I	GWGCWC	2 cut(s)	431, 530
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	4 cut(s)	234, 281, 553, 563
Ama87I	CYCGRG	1 cut(s)	764
Aor13HI	TCCGGA	1 cut(s)	797
AoxI	GGCC	4 cut(s)	30, 38, 90, 346
ApeKI	GCWGC	3 cut(s)	388, 863, 866
ApoI	RAATTY	2 cut(s)	73, 730
ArsI	GACNNNNNNTTYG	2 cut(s)	663, 695
AsiGI	ACCGGT	1 cut(s)	140
AspLEI	GCGC	3 cut(s)	257, 385, 422
AspS9I	GGNCC	6 cut(s)	39, 57, 91, 143, 504, 835
AsuC2I	CCSGG	2 cut(s)	303, 411
AsuHPI	GGTGA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	4 cut(s)	57, 143, 504, 835
BaeGI	GKGCMC	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	4 cut(s)	308, 411, 530, 784
Bbv12I	GWGCWC	2 cut(s)	431, 530
BbvI	GCAGC	3 cut(s)	400, 850, 853
BccI	CCATC	1 cut(s)	892
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	808
BcnI	CCSGG	2 cut(s)	303, 411
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	2 cut(s)	386, 423
BisI	GCNGC	5 cut(s)	386, 389, 476, 864, 867
BlsI	GCNGC	5 cut(s)	387, 390, 477, 865, 868
Bme1390I	CCNGG	3 cut(s)	303, 411, 808
Bme18I	GGWCC	4 cut(s)	57, 143, 504, 835
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	6 cut(s)	39, 57, 91, 143, 504, 835
BmiI	GGNNCC	7 cut(s)	262, 307, 408, 415, 421, 474, 837
BmrFI	CCNGG	3 cut(s)	303, 411, 808
BmsI	GCATC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	2 cut(s)	303, 411
BsaHI	GRCGYC	3 cut(s)	232, 318, 420
BsaWI	WCCGGW	2 cut(s)	140, 797
BsaXI	ACNNNNNCTCC	4 cut(s)	473, 503, 517, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 416, 578
Bse118I	RCCGGY	3 cut(s)	140, 416, 585
Bse1I	ACTGG	2 cut(s)	491, 572
BseAI	TCCGGA	1 cut(s)	797
BseBI	CCWGG	1 cut(s)	808
BseGI	GGATG	1 cut(s)	884
BseLI	CCNNNNNNNGG	3 cut(s)	301, 416, 578
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	491, 572
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	3 cut(s)	400, 850, 853
BseYI	CCCAGC	2 cut(s)	8, 162
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	224, 255
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	4 cut(s)	32, 40, 92, 348
BshNI	GGYRCC	1 cut(s)	419
BshTI	ACCGGT	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	431, 530
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	7 cut(s)	141, 258, 302, 411, 417, 586, 798
BslFI	GGGAC	3 cut(s)	179, 821, 866
BslI	CCNNNNNNNGG	3 cut(s)	301, 416, 578
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	3 cut(s)	179, 821, 866
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	4 cut(s)	32, 40, 92, 348
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	6 cut(s)	308, 411, 431, 530, 765, 784
Bsp13I	TCCGGA	1 cut(s)	797
Bsp143I	GATC	4 cut(s)	226, 286, 545, 568
BspACI	CCGC	9 cut(s)	42, 181, 224, 253, 330, 386, 443, 476, 613
BspANI	GGCC	4 cut(s)	32, 40, 92, 348
BspCNI	CTCAG	1 cut(s)	590
BspEI	TCCGGA	1 cut(s)	797
BspFNI	CGCG	2 cut(s)	224, 255
BspLI	GGNNCC	7 cut(s)	262, 307, 408, 415, 421, 474, 837
BspPI	GGATC	4 cut(s)	234, 281, 553, 563
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	44
BsrFI	RCCGGY	3 cut(s)	140, 416, 585
BsrI	ACTGG	2 cut(s)	491, 572
BssAI	RCCGGY	3 cut(s)	140, 416, 585
BssMI	GATC	4 cut(s)	226, 286, 545, 568
BssNI	GRCGYC	3 cut(s)	232, 318, 420
Bst2UI	CCWGG	1 cut(s)	808
Bst4CI	ACNGT	3 cut(s)	134, 401, 804
Bst6I	CTCTTC	2 cut(s)	51, 799
BstACI	GRCGYC	3 cut(s)	232, 318, 420
BstC8I	GCNNGC	4 cut(s)	30, 42, 418, 450
BstDEI	CTNAG	2 cut(s)	157, 577
BstF5I	GGATG	1 cut(s)	884
BstFNI	CGCG	2 cut(s)	224, 255
BstH2I	RGCGCY	2 cut(s)	386, 423
BstHHI	GCGC	3 cut(s)	257, 385, 422
BstKTI	GATC	4 cut(s)	229, 289, 548, 571
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	4 cut(s)	226, 286, 545, 568
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	5 cut(s)	426, 449, 454, 641, 872
BstNI	CCWGG	1 cut(s)	808
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	3 cut(s)	301, 409, 806
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	765
BstUI	CGCG	2 cut(s)	224, 255
BstV1I	GCAGC	3 cut(s)	400, 850, 853
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	545
BsuRI	GGCC	4 cut(s)	32, 40, 92, 348
BtsCI	GGATG	1 cut(s)	884
Cac8I	GCNNGC	4 cut(s)	30, 42, 418, 450
CfoI	GCGC	3 cut(s)	257, 385, 422
Cfr10I	RCCGGY	3 cut(s)	140, 416, 585
Cfr13I	GGNCC	6 cut(s)	39, 57, 91, 143, 504, 835
CseI	GACGC	2 cut(s)	240, 326
Csp6I	GTAC	1 cut(s)	81
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	2 cut(s)	157, 577
DinI	GGCGCC	1 cut(s)	421
DpnI	GATC	4 cut(s)	228, 288, 547, 570
DpnII	GATC	4 cut(s)	226, 286, 545, 568
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	51, 799
EarI	CTCTTC	2 cut(s)	51, 799
Ecl136II	GAGCTC	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	4 cut(s)	308, 411, 530, 784
Eco47I	GGWCC	4 cut(s)	57, 143, 504, 835
Eco53kI	GAGCTC	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	528
EcoO109I	RGGNCCY	1 cut(s)	835
EcoRI	GAATTC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	806
EcoT38I	GRGCYC	4 cut(s)	308, 411, 530, 784
EgeI	GGCGCC	1 cut(s)	421
EheI	GGCGCC	1 cut(s)	421
FaeI	CATG	1 cut(s)	28
FaqI	GGGAC	3 cut(s)	179, 821, 866
FatI	CATG	1 cut(s)	24
FauI	CCCGC	2 cut(s)	49, 436
Fnu4HI	GCNGC	5 cut(s)	386, 389, 476, 864, 867
FokI	GGATG	1 cut(s)	871
FriOI	GRGCYC	4 cut(s)	308, 411, 530, 784
Fsp4HI	GCNGC	5 cut(s)	386, 389, 476, 864, 867
FspBI	CTAG	1 cut(s)	714
GlaI	GCGC	3 cut(s)	256, 384, 421
GluI	GCNGC	5 cut(s)	386, 389, 476, 864, 867
GsaI	CCCAGC	2 cut(s)	12, 166
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	2 cut(s)	386, 423
HaeIII	GGCC	4 cut(s)	32, 40, 92, 348
HapII	CCGG	7 cut(s)	141, 258, 302, 411, 417, 586, 798
HgaI	GACGC	2 cut(s)	240, 326
HhaI	GCGC	3 cut(s)	257, 385, 422
Hin1I	GRCGYC	3 cut(s)	232, 318, 420
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	3 cut(s)	255, 383, 420
HinP1I	GCGC	3 cut(s)	255, 383, 420
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	3 cut(s)	275, 791, 842
HpaII	CCGG	7 cut(s)	141, 258, 302, 411, 417, 586, 798
HphI	GGTGA	1 cut(s)	270
Hpy188I	TCNGA	7 cut(s)	213, 247, 274, 299, 406, 472, 525
Hpy188III	TCNNGA	4 cut(s)	620, 682, 690, 798
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	319, 763
HpyCH4III	ACNGT	3 cut(s)	134, 401, 804
HpyCH4V	TGCA	5 cut(s)	28, 511, 659, 869, 875
HpyF10VI	GCNNNNNNNGC	5 cut(s)	426, 449, 454, 641, 872
HpyF3I	CTNAG	2 cut(s)	157, 577
Hsp92I	GRCGYC	3 cut(s)	232, 318, 420
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	3 cut(s)	255, 383, 420
KasI	GGCGCC	1 cut(s)	419
Kpn2I	TCCGGA	1 cut(s)	797
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	226, 286, 545, 568
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	5 cut(s)	311, 406, 413, 472, 525
Lsp1109I	GCAGC	3 cut(s)	400, 850, 853
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	714
MalI	GATC	4 cut(s)	228, 288, 547, 570
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	4 cut(s)	226, 286, 545, 568
MboII	GAAGA	2 cut(s)	38, 786
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	6 cut(s)	308, 411, 431, 530, 765, 784
MluCI	AATT	4 cut(s)	61, 73, 84, 730
Mly113I	GGCGCC	1 cut(s)	420
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	3 cut(s)	191, 270, 322
MnlI	CCTC	6 cut(s)	30, 300, 305, 349, 427, 431
MroI	TCCGGA	1 cut(s)	797
MroNI	GCCGGC	1 cut(s)	416
MseI	TTAA	2 cut(s)	87, 536
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	7 cut(s)	141, 258, 302, 411, 417, 586, 798
MspR9I	CCNGG	3 cut(s)	303, 411, 808
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	808
MvnI	CGCG	2 cut(s)	224, 255
MwoI	GCNNNNNNNGC	5 cut(s)	426, 449, 454, 641, 872
NaeI	GCCGGC	1 cut(s)	418
NarI	GGCGCC	1 cut(s)	420
NciI	CCSGG	2 cut(s)	303, 411
NdeII	GATC	4 cut(s)	226, 286, 545, 568
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	7 cut(s)	262, 307, 408, 415, 421, 474, 837
NmeAIII	GCCGAG	1 cut(s)	448
NspI	RCATGY	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	661
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	275, 842
PfoI	TCCNGGA	1 cut(s)	806
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	387, 390, 477, 865, 868
PleI	GAGTC	1 cut(s)	785
PluTI	GGCGCC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	785
PpuMI	RGGWCCY	1 cut(s)	835
PsiI	TTATAA	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	835
Psp6I	CCWGG	1 cut(s)	806
PspFI	CCCAGC	2 cut(s)	8, 162
PspGI	CCWGG	1 cut(s)	806
PspN4I	GGNNCC	7 cut(s)	262, 307, 408, 415, 421, 474, 837
PspPI	GGNCC	6 cut(s)	39, 57, 91, 143, 504, 835
PspPPI	RGGWCCY	1 cut(s)	835
PsuI	RGATCY	1 cut(s)	545
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	530
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	87, 536
SatI	GCNGC	5 cut(s)	386, 389, 476, 864, 867
Sau3AI	GATC	4 cut(s)	226, 286, 545, 568
Sau96I	GGNCC	6 cut(s)	39, 57, 91, 143, 504, 835
SchI	GAGTC	1 cut(s)	785
ScrFI	CCNGG	3 cut(s)	303, 411, 808
SduI	GDGCHC	6 cut(s)	308, 411, 431, 530, 765, 784
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	1 cut(s)	549
SfoI	GGCGCC	1 cut(s)	421
SinI	GGWCC	4 cut(s)	57, 143, 504, 835
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	4 cut(s)	61, 73, 84, 730
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	9 cut(s)	42, 181, 224, 253, 330, 386, 443, 476, 613
SspDI	GGCGCC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	714
SstI	GAGCTC	1 cut(s)	530
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	301, 409, 806
TaaI	ACNGT	3 cut(s)	134, 401, 804
TaqI	TCGA	3 cut(s)	229, 395, 681
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	4 cut(s)	61, 73, 84, 730
TauI	GCSGC	2 cut(s)	388, 478
TfiI	GAWTC	2 cut(s)	275, 842
Tru1I	TTAA	2 cut(s)	87, 536
Tru9I	TTAA	2 cut(s)	87, 536
TseI	GCWGC	3 cut(s)	388, 863, 866
TspDTI	ATGAA	4 cut(s)	17, 38, 140, 301
TspGWI	ACGGA	2 cut(s)	446, 496
VpaK11BI	GGWCC	4 cut(s)	57, 143, 504, 835
XapI	RAATTY	2 cut(s)	73, 730
XceI	RCATGY	1 cut(s)	28
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.