Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014187

Physical Location & Seq

Genomic Coordinates Forward (+)

7761598 .. 7765243

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1092700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCAGTCCCCGAAGCGTCGTGTCGAAATATGAACGCGGATCGACGCCCAAGCTTTTCCGACCACCGCGCTGGAACCCTACACTCCGATTCACCCCATGATCCTCTCCTCCGACCGGGCTCCTTCATCGACGCCACCACCACCGCAACAACCTCCAATGGCCGAACCCCAATCCAAACCAAAAATCCCCACAAAGCGCCGCAGCAATCGAACCGTTCGGAGCCCGGAGCCGGCGCGGAGAGCACGGAGGGAGGGGCGGGGCGTGCCAAGCGAAAAGGGGTTTCGGAGCCGCTGGAGAACTGGTTGCCACCGGGTTGGTCCGTGCAGGAGAAAGTTCGGAGCTCTGGTTTAACCGCCGGATCTACAGATAGGTATTACTTTGATCCAGTCTCAGGTCGCCGGTTTCGGTCAAAGATAGAAGTTCTTCGCTTTCTTGAAACAGGAACAACTAAAAAGGCAAAGACAGAGAATGCTAGCGCTGACAAAACATCTGTCGAGGGTTCTGGAAGCCAAAAACAAAAGAAGTCTAGCACAAAGCCAAAGAATTCTGCGTTGAACTTTGATTATACTGATGTGCCCGAGAAGGTGGAATGGGCTCTTACAGACTCTTCCGGACAGTCCTGGACACCCTTTATTGATAACAAAAAGGTACCTGAATCTACATCAAAAGAATGGGCTGCTGCATTTGCATTAGTCCCATCCAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005730 GO:0005731 GO:0008327 GO:0010369 GO:0010370 GO:0019899 GO:0030874 GO:0031974 GO:0031981 GO:0032991 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043621 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0070013 GO:0097159 GO:0098687 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

237

Amino Acids

25.67

Weight (kDa)

9.63

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	96 - 158	2.7e-12	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46580 AT5G59380
fragaria_vesca	FvH4_3g36180
malus_domestica	MD03G1092700.v1.1 MD11G1107500.v1.1
prunus_persica	Prupe.6G076700_v2.0.a1
pyrus_communis	pycom03g07410
rosa_chinensis	RchiOBHm_Chr5g0064931
rosa_laevigata	RLG00000035743
rosa_multiflora	Rmu_sc0003352.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016390
rosa_rugosa	Rorug05G0366700
rosa_samantha	Rh5AG425200 Rh5BG440000 Rh5CG462700 Rh5DG453200
rosa_wichuraiana	Rw5G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	649
AccII	CGCG	3 cut(s)	38, 69, 236
AccIII	TCCGGA	1 cut(s)	611
AciI	CCGC	8 cut(s)	38, 67, 144, 200, 236, 257, 290, 354
AclWI	GGATC	4 cut(s)	48, 95, 367, 377
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	544
AcyI	GRCGYC	2 cut(s)	46, 132
AfaI	GTAC	1 cut(s)	651
AfeI	AGCGCT	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	115, 230, 392
AgsI	TTSAA	2 cut(s)	437, 556
AjnI	CCWGG	1 cut(s)	620
AluBI	AGCT	2 cut(s)	54, 342
AluI	AGCT	2 cut(s)	54, 342
Alw21I	GWGCWC	2 cut(s)	245, 344
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	4 cut(s)	48, 95, 367, 377
Ama87I	CYCGRG	1 cut(s)	578
Aor13HI	TCCGGA	1 cut(s)	611
Aor51HI	AGCGCT	1 cut(s)	478
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	3 cut(s)	202, 677, 680
ApoI	RAATTY	1 cut(s)	544
ArsI	GACNNNNNNTTYG	2 cut(s)	477, 509
Asp700I	GAANNNNTTC	1 cut(s)	423
Asp718I	GGTACC	1 cut(s)	649
AspLEI	GCGC	4 cut(s)	71, 199, 236, 479
AspS9I	GGNCC	1 cut(s)	318
AsuC2I	CCSGG	3 cut(s)	117, 225, 312
AsuHPI	GGTGA	1 cut(s)	84
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	4 cut(s)	122, 225, 344, 598
Bbv12I	GWGCWC	2 cut(s)	245, 344
BbvI	GCAGC	3 cut(s)	214, 664, 667
BccI	CCATC	1 cut(s)	706
BciT130I	CCWGG	1 cut(s)	622
BcnI	CCSGG	3 cut(s)	117, 225, 312
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	474, 528
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	2 cut(s)	200, 480
BisI	GCNGC	5 cut(s)	200, 203, 290, 678, 681
BlsI	GCNGC	5 cut(s)	201, 204, 291, 679, 682
Bme1390I	CCNGG	4 cut(s)	117, 225, 312, 622
Bme18I	GGWCC	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	318
BmiI	GGNNCC	6 cut(s)	76, 121, 222, 229, 288, 651
BmrFI	CCNGG	4 cut(s)	117, 225, 312, 622
BmtI	GCTAGC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	314
BpuMI	CCSGG	3 cut(s)	117, 225, 312
BsaHI	GRCGYC	2 cut(s)	46, 132
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 331, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 230, 392
Bse118I	RCCGGY	2 cut(s)	230, 399
Bse1I	ACTGG	2 cut(s)	305, 386
BseAI	TCCGGA	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	622
BseGI	GGATG	1 cut(s)	698
BseLI	CCNNNNNNNGG	3 cut(s)	115, 230, 392
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	305, 386
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	3 cut(s)	214, 664, 667
BsgI	GTGCAG	1 cut(s)	344
Bsh1236I	CGCG	3 cut(s)	38, 69, 236
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	649
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	245, 344
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	7 cut(s)	116, 225, 231, 311, 357, 400, 612
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	3 cut(s)	115, 230, 392
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	680
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	578
Bsp1286I	GDGCHC	6 cut(s)	122, 225, 245, 344, 579, 598
Bsp13I	TCCGGA	1 cut(s)	611
Bsp143I	GATC	4 cut(s)	40, 100, 359, 382
BspACI	CCGC	8 cut(s)	38, 67, 144, 200, 236, 257, 290, 354
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	404
BspEI	TCCGGA	1 cut(s)	611
BspFNI	CGCG	3 cut(s)	38, 69, 236
BspLI	GGNNCC	6 cut(s)	76, 121, 222, 229, 288, 651
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	4 cut(s)	48, 95, 367, 377
BspT107I	GGYRCC	1 cut(s)	649
BsrFI	RCCGGY	2 cut(s)	230, 399
BsrI	ACTGG	2 cut(s)	305, 386
BssAI	RCCGGY	2 cut(s)	230, 399
BssMI	GATC	4 cut(s)	40, 100, 359, 382
BssNI	GRCGYC	2 cut(s)	46, 132
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	2 cut(s)	215, 618
Bst6I	CTCTTC	1 cut(s)	613
BstACI	GRCGYC	2 cut(s)	46, 132
BstC8I	GCNNGC	3 cut(s)	232, 264, 475
BstDEI	CTNAG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	698
BstFNI	CGCG	3 cut(s)	38, 69, 236
BstH2I	RGCGCY	2 cut(s)	200, 480
BstHHI	GCGC	4 cut(s)	71, 199, 236, 479
BstKTI	GATC	4 cut(s)	43, 103, 362, 385
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	4 cut(s)	40, 100, 359, 382
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 263, 268, 686
BstNI	CCWGG	1 cut(s)	622
BstSCI	CCNGG	4 cut(s)	115, 223, 310, 620
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	579
BstUI	CGCG	3 cut(s)	38, 69, 236
BstV1I	GCAGC	3 cut(s)	214, 664, 667
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	2 cut(s)	71, 315
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	698
Cac8I	GCNNGC	3 cut(s)	232, 264, 475
CfoI	GCGC	4 cut(s)	71, 199, 236, 479
Cfr10I	RCCGGY	2 cut(s)	230, 399
Cfr13I	GGNCC	1 cut(s)	318
CseI	GACGC	3 cut(s)	6, 54, 140
Csp6I	GTAC	1 cut(s)	650
CviAII	CATG	1 cut(s)	98
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	4 cut(s)	42, 102, 361, 384
DpnII	GATC	4 cut(s)	40, 100, 359, 382
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	613
EarI	CTCTTC	1 cut(s)	613
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	4 cut(s)	122, 225, 344, 598
Eco47I	GGWCC	1 cut(s)	318
Eco47III	AGCGCT	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	620
EcoT38I	GRGCYC	4 cut(s)	122, 225, 344, 598
FaeI	CATG	1 cut(s)	101
FaiI	YATR	3 cut(s)	32, 99, 567
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	5 cut(s)	200, 203, 290, 678, 681
FokI	GGATG	1 cut(s)	685
FriOI	GRGCYC	4 cut(s)	122, 225, 344, 598
Fsp4HI	GCNGC	5 cut(s)	200, 203, 290, 678, 681
FspBI	CTAG	2 cut(s)	474, 528
GlaI	GCGC	4 cut(s)	70, 198, 235, 478
GluI	GCNGC	5 cut(s)	200, 203, 290, 678, 681
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	2 cut(s)	200, 480
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	7 cut(s)	116, 225, 231, 311, 357, 400, 612
HgaI	GACGC	3 cut(s)	6, 54, 140
HhaI	GCGC	4 cut(s)	71, 199, 236, 479
Hin1I	GRCGYC	2 cut(s)	46, 132
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	4 cut(s)	69, 197, 234, 477
HinP1I	GCGC	4 cut(s)	69, 197, 234, 477
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	3 cut(s)	89, 605, 656
HpaII	CCGG	7 cut(s)	116, 225, 231, 311, 357, 400, 612
HphI	GGTGA	1 cut(s)	84
Hpy188I	TCNGA	6 cut(s)	61, 88, 113, 220, 286, 339
Hpy188III	TCNNGA	3 cut(s)	434, 504, 612
Hpy99I	CGWCG	3 cut(s)	22, 48, 134
HpyAV	CCTTC	2 cut(s)	133, 577
HpyCH4III	ACNGT	2 cut(s)	215, 618
HpyCH4V	TGCA	3 cut(s)	325, 683, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 263, 268, 686
HpyF3I	CTNAG	1 cut(s)	391
Hsp92I	GRCGYC	2 cut(s)	46, 132
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	4 cut(s)	69, 197, 234, 477
Kpn2I	TCCGGA	1 cut(s)	611
KpnI	GGTACC	1 cut(s)	653
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	40, 100, 359, 382
LmnI	GCTCC	5 cut(s)	125, 220, 227, 286, 339
Lsp1109I	GCAGC	3 cut(s)	214, 664, 667
MaeI	CTAG	2 cut(s)	474, 528
MalI	GATC	4 cut(s)	42, 102, 361, 384
MboI	GATC	4 cut(s)	40, 100, 359, 382
MboII	GAAGA	2 cut(s)	416, 600
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	6 cut(s)	122, 225, 245, 344, 579, 598
MluCI	AATT	1 cut(s)	544
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	2 cut(s)	84, 136
MnlI	CCTC	6 cut(s)	114, 119, 163, 241, 245, 490
MroI	TCCGGA	1 cut(s)	611
MroNI	GCCGGC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	7 cut(s)	116, 225, 231, 311, 357, 400, 612
MspR9I	CCNGG	4 cut(s)	117, 225, 312, 622
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	622
MvnI	CGCG	3 cut(s)	38, 69, 236
MwoI	GCNNNNNNNGC	4 cut(s)	240, 263, 268, 686
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	3 cut(s)	117, 225, 312
NdeII	GATC	4 cut(s)	40, 100, 359, 382
NgoMIV	GCCGGC	1 cut(s)	230
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	6 cut(s)	76, 121, 222, 229, 288, 651
PctI	GAATGC	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	89, 656
PfoI	TCCNGGA	1 cut(s)	620
PkrI	GCNGC	5 cut(s)	201, 204, 291, 679, 682
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
Psp124BI	GAGCTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	6 cut(s)	76, 121, 222, 229, 288, 651
PspPI	GGNCC	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	5 cut(s)	200, 203, 290, 678, 681
Sau3AI	GATC	4 cut(s)	40, 100, 359, 382
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	4 cut(s)	117, 225, 312, 622
SduI	GDGCHC	6 cut(s)	122, 225, 245, 344, 579, 598
SetI	ASST	8 cut(s)	56, 155, 344, 374, 397, 588, 651, 655
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	318
Sse9I	AATT	1 cut(s)	544
SsiI	CCGC	8 cut(s)	38, 67, 144, 200, 236, 257, 290, 354
SspMI	CTAG	2 cut(s)	474, 528
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	4 cut(s)	115, 223, 310, 620
TaaI	ACNGT	2 cut(s)	215, 618
TaqI	TCGA	5 cut(s)	25, 43, 129, 209, 495
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	1 cut(s)	544
TauI	GCSGC	2 cut(s)	202, 292
TfiI	GAWTC	2 cut(s)	89, 656
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	3 cut(s)	202, 677, 680
TspDTI	ATGAA	2 cut(s)	47, 115
TspGWI	ACGGA	2 cut(s)	260, 310
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	474, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.