AT3G46880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009807
Physical Location & Seq
Forward (+)
17265234 .. 17266266
1033 bp
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UTR
Exon/CDS
Intron
AT3G46880.1

Sequence Viewer

Length: 462 bp
ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGTCTTCTTCCTTCACAGCTCAACTCTTTGGCCCCAAGGAACCTTCCTCCTCTGCCAACTTCAACTCCATTTTCCCTCCTTCCAAGGGAACAGCAAGAAACATCCTAAGCTCCAAACATGGGTCCCTAGAACAACGTAAAGAAGCTGGAACCTGCAATCTAAGCTCATCTCTTTACTACGGTGGTCAAGATGTTTACTCTCACCCCACACACAACCATACTTACCCTACAAAGAGACAAAATCTTTTGACTTTACAAAACGTTGAATCATTCAGATTAACAAGGATCAGAACAGAGATAACAACGATGCCAATTCGTCTGACGCCTCTAGAGGAAACTGGTGGCAAGGTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAATATCAAGTTGAAACAGAACAATATTTGATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.05

Weight (kDa)

9.14

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46880 AT3G46880 AT5G59080 AT5G59080
fragaria_vesca FvH4_3g37190
malus_domestica MD03G1083100.v1.1 MD11G1091200.v1.1
prunus_persica Prupe.6G067400_v2.0.a1 Prupe.6G067400_v2.0.a1
pyrus_communis pycom03g06610 pycom11g07580
rosa_chinensis RchiOBHm_Chr5g0066931
rosa_laevigata RLG00000035894
rosa_multiflora Rmu_sc0008378.1_g000008
rosa_roxburghii Rroxscaffold_1G00014190
rosa_rugosa Rorug05G0379900 Rorug05G0379900
rosa_samantha Rh5BG456500 Rh5CG478600 Rh5DG471300
rosa_wichuraiana Rw5G041100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
AclI AACGTT 1 cut(s) 291
AclWI GGATC 2 cut(s) 31, 323
AcyI GRCGYC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 116, 150
AgsI TTSAA 3 cut(s) 94, 296, 437
AluBI AGCT 5 cut(s) 50, 141, 176, 195, 399
AluI AGCT 5 cut(s) 50, 141, 176, 195, 399
Alw26I GTCTC 2 cut(s) 259, 418
AlwI GGATC 2 cut(s) 31, 323
AoxI GGCC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 62, 153
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 259, 418
BfaI CTAG 3 cut(s) 158, 359, 393
BfmI CTRYAG 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 62, 153
BmiI GGNNCC 5 cut(s) 64, 72, 154, 155, 181
BmsI GCATC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 66, 114
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 150
Bse1I ACTGG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 66, 114
BseGI GGATG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 116, 150
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 70
BshFI GGCC 1 cut(s) 63
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 116, 150
BsmAI GTCTC 2 cut(s) 259, 418
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 23, 315
BspANI GGCC 1 cut(s) 63
BspLI GGNNCC 5 cut(s) 64, 72, 154, 155, 181
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 2 cut(s) 31, 323
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 66, 114
BssMI GATC 2 cut(s) 23, 315
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 66, 114
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 353
BstDEI CTNAG 3 cut(s) 137, 191, 405
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 2 cut(s) 26, 318
BstMAI GTCTC 2 cut(s) 259, 418
BstMBI GATC 2 cut(s) 23, 315
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 62, 153
CseI GACGC 2 cut(s) 361, 400
CviAII CATG 1 cut(s) 149
CviJI RGCY 6 cut(s) 50, 63, 141, 176, 195, 399
CviKI_1 RGCY 6 cut(s) 50, 63, 141, 176, 195, 399
DdeI CTNAG 3 cut(s) 137, 191, 405
DpnI GATC 2 cut(s) 25, 317
DpnII GATC 2 cut(s) 23, 315
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 66, 114
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 153
EcoT14I CCWWGG 2 cut(s) 66, 114
ErhI CCWWGG 2 cut(s) 66, 114
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 150, 249, 387
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 148
FokI GGATG 1 cut(s) 119
FspBI CTAG 3 cut(s) 158, 359, 393
HaeIII GGCC 1 cut(s) 63
HgaI GACGC 2 cut(s) 361, 400
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 1 cut(s) 296
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 226, 382
Hpy188I TCNGA 3 cut(s) 305, 320, 351
Hpy188III TCNNGA 2 cut(s) 218, 359
Hpy8I GTNNAC 2 cut(s) 226, 382
HpyAV CCTTC 3 cut(s) 52, 84, 120
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 166, 291
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 3 cut(s) 137, 191, 405
HpySE526I ACGT 2 cut(s) 166, 291
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 1 cut(s) 152
KflI GGGWCCC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 23, 315
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 3 cut(s) 162, 196, 354
LweI GCATC 1 cut(s) 327
MaeI CTAG 3 cut(s) 158, 359, 393
MaeII ACGT 2 cut(s) 166, 291
MalI GATC 2 cut(s) 25, 317
MboI GATC 2 cut(s) 23, 315
MboII GAAGA 4 cut(s) 27, 27, 30, 434
MluCI AATT 1 cut(s) 342
MnlI CCTC 5 cut(s) 88, 91, 117, 355, 366
MseI TTAA 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 2 cut(s) 23, 315
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 5 cut(s) 64, 72, 154, 155, 181
PfeI GAWTC 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 153
Psp1406I AACGTT 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 153
PspN4I GGNNCC 5 cut(s) 64, 72, 154, 155, 181
PspPI GGNCC 2 cut(s) 62, 153
PspPPI RGGWCCY 1 cut(s) 153
SaqAI TTAA 1 cut(s) 308
Sau3AI GATC 2 cut(s) 23, 315
Sau96I GGNCC 2 cut(s) 62, 153
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 153
Sse9I AATT 1 cut(s) 342
SspI AATATT 1 cut(s) 449
SspMI CTAG 3 cut(s) 158, 359, 393
StyI CCWWGG 2 cut(s) 66, 114
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 169, 294
TasI AATT 1 cut(s) 342
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 153
XbaI TCTAGA 1 cut(s) 358
XspI CTAG 3 cut(s) 158, 359, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.