pycom11g07580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009807
Physical Location & Seq
Reverse (-)
5835281 .. 5837269
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07580.4

Sequence Viewer

Length: 453 bp
ATGGAGAGTAACAATAAGAAGCCGGGCAATTCATGTTCCTCATTGACTGCTGATCTTTTTGGTACCAAGGAATCTCCTCCCAAGTCTTCTACTGGGATTTTTGCTTCCATTTTCCCACCTCCATCACAGCTTATTGCCTCGGCCTTTGCATTTTTCTCGAACTATATAGCTATAAGTAGCGAAGGTGCACGCTATAGCATACCCAACAAGGACCGGAGTTCAGTCCTTCAGGAAGAAAGAGCAGAACCATGTTATCTAAGTTCATCTATTTACTATGGTGGGCAAGAGGTGTATTCCCAGTCCCCAAGGACCCATGCCTCTGGATCCTATCCTATAAAAGATGCGGGAGAAGATGATCCAAATGGAACCAACTCGAACAGTGCCGCCCGAGGAAATTGGTGGCAAGCGTATGAACTTCTGACTTGCGTTTCTGCAGGTTCGCTCTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.19

Weight (kDa)

5.09

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46880 AT3G46880 AT5G59080 AT5G59080
fragaria_vesca FvH4_3g37190
malus_domestica MD03G1083100.v1.1 MD11G1091200.v1.1
prunus_persica Prupe.6G067400_v2.0.a1 Prupe.6G067400_v2.0.a1
pyrus_communis pycom03g06610 pycom11g07580
rosa_chinensis RchiOBHm_Chr5g0066931
rosa_laevigata RLG00000035894
rosa_multiflora Rmu_sc0008378.1_g000008
rosa_roxburghii Rroxscaffold_1G00014190
rosa_rugosa Rorug05G0379900 Rorug05G0379900
rosa_samantha Rh5BG456500 Rh5CG478600 Rh5DG471300
rosa_wichuraiana Rw5G041100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 425
Acc65I GGTACC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 2 cut(s) 344, 384
AclWI GGATC 3 cut(s) 318, 331, 350
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 64
AluBI AGCT 2 cut(s) 130, 170
AluI AGCT 2 cut(s) 130, 170
Alw21I GWGCWC 1 cut(s) 190
Alw44I GTGCAC 1 cut(s) 186
AlwI GGATC 3 cut(s) 318, 331, 350
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 1 cut(s) 141
ApaLI GTGCAC 1 cut(s) 186
Asp718I GGTACC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 211, 309
AsuC2I CCSGG 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 2 cut(s) 211, 309
BaeGI GKGCMC 1 cut(s) 190
BamHI GGATCC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 190
BccI CCATC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BcnI CCSGG 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 193, 432
BfuAI ACCTGC 1 cut(s) 425
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 211, 309
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 2 cut(s) 211, 309
BmiI GGNNCC 4 cut(s) 64, 311, 325, 367
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 2 cut(s) 102, 292
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 2 cut(s) 102, 292
BpiI GAAGAC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 66, 138, 305, 388
BsaWI WCCGGW 1 cut(s) 213
Bse1I ACTGG 2 cut(s) 97, 298
BseDI CCNNGG 4 cut(s) 66, 138, 305, 388
BseNI ACTGG 2 cut(s) 97, 298
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 190
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 2 cut(s) 23, 214
BslFI GGGAC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 52, 323, 355
BspACI CCGC 2 cut(s) 344, 384
BspANI GGCC 1 cut(s) 143
BspLI GGNNCC 4 cut(s) 64, 311, 325, 367
BspMAI CTGCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 3 cut(s) 318, 331, 350
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 2 cut(s) 97, 298
BssECI CCNNGG 4 cut(s) 66, 138, 305, 388
BssMI GATC 3 cut(s) 52, 323, 355
BssT1I CCWWGG 2 cut(s) 66, 305
Bst4CI ACNGT 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 190, 405
BstDEI CTNAG 1 cut(s) 257
BstKTI GATC 3 cut(s) 55, 326, 358
BstMBI GATC 3 cut(s) 52, 323, 355
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 193, 432
BstSLI GKGCMC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 1 cut(s) 323
BsuRI GGCC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 385
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 2 cut(s) 190, 405
Cfr13I GGNCC 2 cut(s) 211, 309
Csp6I GTAC 1 cut(s) 63
CviAII CATG 3 cut(s) 33, 249, 314
CviJI RGCY 4 cut(s) 22, 130, 143, 170
CviKI_1 RGCY 4 cut(s) 22, 130, 143, 170
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 257
DpnI GATC 3 cut(s) 54, 325, 357
DpnII GATC 3 cut(s) 52, 323, 355
Eco130I CCWWGG 2 cut(s) 66, 305
Eco47I GGWCC 2 cut(s) 211, 309
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 66, 305
ErhI CCWWGG 2 cut(s) 66, 305
FaeI CATG 3 cut(s) 36, 252, 317
FaqI GGGAC 1 cut(s) 286
FatI CATG 3 cut(s) 32, 248, 313
FauI CCCGC 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 384
GluI GCNGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 143
HapII CCGG 2 cut(s) 23, 214
Hin1II CATG 3 cut(s) 36, 252, 317
HinfI GANTC 1 cut(s) 71
HpaII CCGG 2 cut(s) 23, 214
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 3 cut(s) 157, 230, 321
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 176, 236
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 149, 188, 434
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 3 cut(s) 36, 252, 317
KpnI GGTACC 1 cut(s) 66
Kzo9I GATC 3 cut(s) 52, 323, 355
LpnPI CCDG 7 cut(s) 36, 78, 215, 227, 306, 311, 420
LweI GCATC 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 54, 325, 357
MboI GATC 3 cut(s) 52, 323, 355
MboII GAAGA 3 cut(s) 78, 245, 362
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 28, 394
MnlI CCTC 7 cut(s) 49, 87, 129, 148, 280, 328, 383
MspI CCGG 2 cut(s) 23, 214
MspR9I CCNGG 1 cut(s) 24
NciI CCSGG 1 cut(s) 24
NdeII GATC 3 cut(s) 52, 323, 355
NlaIII CATG 3 cut(s) 36, 252, 317
NlaIV GGNNCC 4 cut(s) 64, 311, 325, 367
NmeAIII GCCGAG 1 cut(s) 119
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 385
PpuMI RGGWCCY 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 309
PspN4I GGNNCC 4 cut(s) 64, 311, 325, 367
PspPI GGNCC 2 cut(s) 211, 309
PspPPI RGGWCCY 1 cut(s) 309
PstI CTGCAG 1 cut(s) 436
PsuI RGATCY 1 cut(s) 323
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 3 cut(s) 52, 323, 355
Sau96I GGNCC 2 cut(s) 211, 309
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 190
SetI ASST 6 cut(s) 121, 132, 172, 187, 291, 439
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 2 cut(s) 193, 432
SinI GGWCC 2 cut(s) 211, 309
Sse9I AATT 2 cut(s) 28, 394
SsiI CCGC 2 cut(s) 344, 384
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 2 cut(s) 66, 305
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 158, 374
TasI AATT 2 cut(s) 28, 394
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 385
TspDTI ATGAA 3 cut(s) 21, 252, 426
TspRI CASTG 1 cut(s) 385
VneI GTGCAC 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 211, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.