Prupe.6G067400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009807
Physical Location & Seq
Reverse (-)
4643369 .. 4647242
3874 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G067400.2

Sequence Viewer

Length: 651 bp
ATGATCTTCATCACGTGCTCTGCTTTTCTAGTTTTCTACCTCCGCAAAATCTTATCTGCTGCTTTGCTTTGTTTCATCAACTGGGTTTTTCTTGGGAACTGCTTTTTTGGAGAGTGCTTTTGTTTGGAGTGGCTTTTTGAGTTGACTCAGAGAAAGAAAGGAAATAAAATGGAGAGTGCTAAGAAGCAGGGTAGCGCAGCTTCCTCATTGACTGCTGATCTCTTTGGTGTCAAGGAGCCACCACCCAAGTCGTCTACTGGGATTTTTGCATCTATTTTTCCACCTCCATCTCAGGTGGTAGGAAGGAACTCTTCAAGCTCTGAGCTGACAGAATATTGGCAAAAACAGTCCTTGGGAAATCATGCATGGAACACCAAGCAAGGTTGTCCAGCTATAAGTAGCGAAGGTGCACGCTATAGCTTACCCAACAAGGACCGCAGTTCAGTTCTTCAGGAAGAAAGAGCAGAACCATGTTATCTAAGTTCATCTCTTTACTATGGTGGGCAAGAGGTGTATTCCCAGTCCCCAAGTACCCATGCCTCTGGATCCTACCCTATATTCAAGAAAGATGGGGGAGAAGATGATCCAAATGGAAGCAATTCGAACAGTGCTGCCCGAGGAAATTGGTGGCAAGGTTCGCTCTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.88

Weight (kDa)

8.11

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46880 AT3G46880 AT5G59080 AT5G59080
fragaria_vesca FvH4_3g37190
malus_domestica MD03G1083100.v1.1 MD11G1091200.v1.1
prunus_persica Prupe.6G067400_v2.0.a1 Prupe.6G067400_v2.0.a1
pyrus_communis pycom03g06610 pycom11g07580
rosa_chinensis RchiOBHm_Chr5g0066931
rosa_laevigata RLG00000035894
rosa_multiflora Rmu_sc0008378.1_g000008
rosa_roxburghii Rroxscaffold_1G00014190
rosa_rugosa Rorug05G0379900 Rorug05G0379900
rosa_samantha Rh5BG456500 Rh5CG478600 Rh5DG471300
rosa_wichuraiana Rw5G041100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 254
AciI CCGC 2 cut(s) 43, 436
AclWI GGATC 3 cut(s) 540, 553, 578
AcuI CTGAAG 1 cut(s) 434
AcvI CACGTG 1 cut(s) 15
AfaI GTAC 1 cut(s) 532
AgsI TTSAA 2 cut(s) 315, 562
AluBI AGCT 5 cut(s) 200, 318, 325, 392, 420
AluI AGCT 5 cut(s) 200, 318, 325, 392, 420
Alw21I GWGCWC 2 cut(s) 20, 412
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 3 cut(s) 540, 553, 578
Ama87I CYCGRG 1 cut(s) 615
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 3 cut(s) 59, 197, 611
Asp700I GAANNNNTTC 1 cut(s) 598
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 433
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 412
BamHI GGATCC 1 cut(s) 545
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BbrPI CACGTG 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 20, 412
BbvI GCAGC 3 cut(s) 46, 209, 598
BccI CCATC 2 cut(s) 295, 563
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 415
BisI GCNGC 3 cut(s) 60, 198, 612
BlsI GCNGC 3 cut(s) 61, 199, 613
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 2 cut(s) 237, 547
BmrI ACTGGG 3 cut(s) 91, 267, 514
BmsI GCATC 1 cut(s) 278
BmuI ACTGGG 3 cut(s) 91, 267, 514
Bpu14I TTCGAA 1 cut(s) 602
BsaAI YACGTR 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 351, 616
Bse1I ACTGG 3 cut(s) 86, 262, 520
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 351, 616
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 3 cut(s) 161, 305, 312
BseNI ACTGG 3 cut(s) 86, 262, 520
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 3 cut(s) 46, 209, 598
BsiHKAI GWGCWC 2 cut(s) 20, 412
BsiHKCI CYCGRG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 508
BsmFI GGGAC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 615
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 2 cut(s) 20, 412
Bsp143I GATC 4 cut(s) 3, 217, 545, 583
BspACI CCGC 2 cut(s) 43, 436
BspCNI CTCAG 3 cut(s) 160, 304, 313
BspLI GGNNCC 2 cut(s) 237, 547
BspPI GGATC 3 cut(s) 540, 553, 578
BspT104I TTCGAA 1 cut(s) 602
BsrI ACTGG 3 cut(s) 86, 262, 520
BssECI CCNNGG 2 cut(s) 351, 616
BssMI GATC 4 cut(s) 3, 217, 545, 583
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 348, 608
Bst6I CTCTTC 1 cut(s) 316
BstBAI YACGTR 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 5 cut(s) 147, 180, 291, 321, 479
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 4 cut(s) 6, 220, 548, 586
BstMBI GATC 4 cut(s) 3, 217, 545, 583
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstSFI CTRYAG 1 cut(s) 415
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 3 cut(s) 46, 209, 598
BstX2I RGATCY 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 542
BstYI RGATCY 1 cut(s) 545
BtsIMutI CAGTG 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 531
CviAII CATG 4 cut(s) 362, 366, 471, 536
CviJI RGCY 7 cut(s) 133, 200, 238, 318, 325, 392, 420
CviKI_1 RGCY 7 cut(s) 133, 200, 238, 318, 325, 392, 420
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 5 cut(s) 147, 180, 291, 321, 479
DpnI GATC 4 cut(s) 5, 219, 547, 585
DpnII GATC 4 cut(s) 3, 217, 545, 583
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 434
Eco72I CACGTG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 351
EcoT22I ATGCAT 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 4 cut(s) 365, 369, 474, 539
FaiI YATR 8 cut(s) 363, 367, 395, 417, 472, 498, 537, 557
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 1 cut(s) 508
FatI CATG 4 cut(s) 361, 365, 470, 535
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 3 cut(s) 60, 198, 612
Fsp4HI GCNGC 3 cut(s) 60, 198, 612
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 196
GluI GCNGC 3 cut(s) 60, 198, 612
HhaI GCGC 1 cut(s) 197
Hin1II CATG 4 cut(s) 365, 369, 474, 539
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 144, 255, 410
Hpy188I TCNGA 2 cut(s) 150, 322
Hpy188III TCNNGA 3 cut(s) 452, 543, 562
Hpy8I GTNNAC 3 cut(s) 144, 255, 410
HpyAV CCTTC 2 cut(s) 297, 398
HpyCH4III ACNGT 2 cut(s) 348, 608
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 269, 365, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 5 cut(s) 147, 180, 291, 321, 479
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 4 cut(s) 365, 369, 474, 539
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 4 cut(s) 3, 217, 545, 583
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 8 cut(s) 67, 173, 243, 278, 402, 437, 528, 533
Lsp1109I GCAGC 3 cut(s) 46, 209, 598
LweI GCATC 1 cut(s) 278
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 14
MalI GATC 4 cut(s) 5, 219, 547, 585
MboI GATC 4 cut(s) 3, 217, 545, 583
MboII GAAGA 4 cut(s) 303, 440, 467, 590
MflI RGATCY 1 cut(s) 545
MhlI GDGCHC 2 cut(s) 20, 412
MluCI AATT 2 cut(s) 598, 622
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 6 cut(s) 50, 214, 294, 502, 550, 611
Mph1103I ATGCAT 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 598
MwoI GCNNNNNNNGC 1 cut(s) 637
NdeII GATC 4 cut(s) 3, 217, 545, 583
NlaIII CATG 4 cut(s) 365, 369, 474, 539
NlaIV GGNNCC 2 cut(s) 237, 547
NsiI ATGCAT 1 cut(s) 367
NspV TTCGAA 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 598
PkrI GCNGC 3 cut(s) 61, 199, 613
PleI GAGTC 1 cut(s) 139
PmaCI CACGTG 1 cut(s) 15
PmlI CACGTG 1 cut(s) 15
PpsI GAGTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 15
PspCI CACGTG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 237, 547
PspPI GGNCC 1 cut(s) 433
PsuI RGATCY 1 cut(s) 545
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SatI GCNGC 3 cut(s) 60, 198, 612
Sau3AI GATC 4 cut(s) 3, 217, 545, 583
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 2 cut(s) 20, 412
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 415
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 1 cut(s) 433
Sse9I AATT 2 cut(s) 598, 622
SsiI CCGC 2 cut(s) 43, 436
SspI AATATT 1 cut(s) 335
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 348, 608
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 602
TasI AATT 2 cut(s) 598, 622
TscAI CASTG 1 cut(s) 613
TseI GCWGC 3 cut(s) 59, 197, 611
TspDTI ATGAA 2 cut(s) 64, 474
TspRI CASTG 1 cut(s) 613
VneI GTGCAC 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.