MD11G1091200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009807
Physical Location & Seq
Reverse (-)
7599439 .. 7602385
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1091200.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGAGAGTAACAATAAGAAGCCGGGCAATTCAGGTTCCTCATTGACTGCTGATCTTTTTGGTACCAAGGAATCTCCTCCCAAGTCTTCTACTGGGATTTTTGCTTCCATTTTCCCACCTCCATCACAGGTGGTTGGGAGGAACTCTTCAATCTCTGAGCTGACAGAATATTGGCAGCAGCAGTCCTTGAGAAATCATGCACGGAACACCAAGCAAGCTATAAGTAGCGAAGGTGCACGCTATAGCGTACCCAACAAGGACCGGAGTTCAGTCCTTCAGGAAGAAAGAGCAGAACCATGTTATCTAAGTTCATCTATTTACTATGGTGGGCAAGAGGTGTATTCCCAGTCCCCAAGGACCCATGCCTCTGGATCCTATCCTATATTCAAGAAAGATGCGGGAGAAGATGATCCAAATGGAACCAACTCGAACAGTGCCGCCCGAGGAAATTGGTGGCAAGGTTCGCTCTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.33

Weight (kDa)

7.81

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46880 AT3G46880 AT5G59080 AT5G59080
fragaria_vesca FvH4_3g37190
malus_domestica MD03G1083100.v1.1 MD11G1091200.v1.1
prunus_persica Prupe.6G067400_v2.0.a1 Prupe.6G067400_v2.0.a1
pyrus_communis pycom03g06610 pycom11g07580
rosa_chinensis RchiOBHm_Chr5g0066931
rosa_laevigata RLG00000035894
rosa_multiflora Rmu_sc0008378.1_g000008
rosa_roxburghii Rroxscaffold_1G00014190
rosa_rugosa Rorug05G0379900 Rorug05G0379900
rosa_samantha Rh5BG456500 Rh5CG478600 Rh5DG471300
rosa_wichuraiana Rw5G041100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 2 cut(s) 398, 438
AclWI GGATC 3 cut(s) 366, 379, 404
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 2 cut(s) 64, 249
AgsI TTSAA 2 cut(s) 150, 388
AluBI AGCT 2 cut(s) 160, 218
AluI AGCT 2 cut(s) 160, 218
Alw21I GWGCWC 1 cut(s) 238
Alw44I GTGCAC 1 cut(s) 234
AlwI GGATC 3 cut(s) 366, 379, 404
Ama87I CYCGRG 1 cut(s) 441
ApaLI GTGCAC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 175, 178
Asp718I GGTACC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 259, 357
AsuC2I CCSGG 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 2 cut(s) 259, 357
BaeGI GKGCMC 1 cut(s) 238
BamHI GGATCC 1 cut(s) 371
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 187, 190
BccI CCATC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 3 cut(s) 176, 179, 438
BlsI GCNGC 3 cut(s) 177, 180, 439
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 259, 357
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 2 cut(s) 259, 357
BmiI GGNNCC 5 cut(s) 37, 64, 359, 373, 421
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 2 cut(s) 102, 340
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 2 cut(s) 102, 340
BpiI GAAGAC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 66, 353, 442
BsaWI WCCGGW 1 cut(s) 261
Bse1I ACTGG 2 cut(s) 97, 346
BseDI CCNNGG 3 cut(s) 66, 353, 442
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 97, 346
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 2 cut(s) 187, 190
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 2 cut(s) 23, 262
BslFI GGGAC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 3 cut(s) 52, 371, 409
BspACI CCGC 2 cut(s) 398, 438
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 5 cut(s) 37, 64, 359, 373, 421
BspPI GGATC 3 cut(s) 366, 379, 404
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 2 cut(s) 97, 346
BssECI CCNNGG 3 cut(s) 66, 353, 442
BssMI GATC 3 cut(s) 52, 371, 409
BssT1I CCWWGG 2 cut(s) 66, 353
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 216, 238
BstDEI CTNAG 2 cut(s) 156, 305
BstKTI GATC 3 cut(s) 55, 374, 412
BstMBI GATC 3 cut(s) 52, 371, 409
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 187, 190
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 1 cut(s) 371
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 216, 238
Cfr13I GGNCC 2 cut(s) 259, 357
Csp6I GTAC 2 cut(s) 63, 248
CviAII CATG 3 cut(s) 197, 297, 362
CviJI RGCY 3 cut(s) 22, 160, 218
CviKI_1 RGCY 3 cut(s) 22, 160, 218
CviQI GTAC 2 cut(s) 63, 248
DdeI CTNAG 2 cut(s) 156, 305
DpnI GATC 3 cut(s) 54, 373, 411
DpnII GATC 3 cut(s) 52, 371, 409
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 66, 353
Eco47I GGWCC 2 cut(s) 259, 357
Eco57I CTGAAG 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 357
EcoT14I CCWWGG 2 cut(s) 66, 353
ErhI CCWWGG 2 cut(s) 66, 353
FaeI CATG 3 cut(s) 200, 300, 365
FaiI YATR 7 cut(s) 198, 221, 243, 298, 324, 363, 383
FaqI GGGAC 1 cut(s) 334
FatI CATG 3 cut(s) 196, 296, 361
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 3 cut(s) 176, 179, 438
Fsp4HI GCNGC 3 cut(s) 176, 179, 438
GluI GCNGC 3 cut(s) 176, 179, 438
HapII CCGG 2 cut(s) 23, 262
Hin1II CATG 3 cut(s) 200, 300, 365
HinfI GANTC 1 cut(s) 71
HpaII CCGG 2 cut(s) 23, 262
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 3 cut(s) 278, 369, 388
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 224, 284
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 2 cut(s) 200, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 2 cut(s) 156, 305
Hsp92II CATG 3 cut(s) 200, 300, 365
KpnI GGTACC 1 cut(s) 66
Kzo9I GATC 3 cut(s) 52, 371, 409
LpnPI CCDG 8 cut(s) 18, 36, 78, 113, 263, 275, 354, 359
Lsp1109I GCAGC 2 cut(s) 187, 190
LweI GCATC 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 54, 373, 411
MboI GATC 3 cut(s) 52, 371, 409
MboII GAAGA 4 cut(s) 78, 138, 293, 416
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 2 cut(s) 28, 448
MnlI CCTC 7 cut(s) 49, 87, 129, 132, 328, 376, 437
MspI CCGG 2 cut(s) 23, 262
MspR9I CCNGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 463
NciI CCSGG 1 cut(s) 24
NdeII GATC 3 cut(s) 52, 371, 409
NlaIII CATG 3 cut(s) 200, 300, 365
NlaIV GGNNCC 5 cut(s) 37, 64, 359, 373, 421
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 177, 180, 439
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
PspN4I GGNNCC 5 cut(s) 37, 64, 359, 373, 421
PspPI GGNCC 2 cut(s) 259, 357
PspPPI RGGWCCY 1 cut(s) 357
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 2 cut(s) 64, 249
RsaNI GTAC 2 cut(s) 63, 248
SatI GCNGC 3 cut(s) 176, 179, 438
Sau3AI GATC 3 cut(s) 52, 371, 409
Sau96I GGNCC 2 cut(s) 259, 357
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 238
SetI ASST 8 cut(s) 37, 121, 132, 162, 220, 235, 339, 463
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 2 cut(s) 259, 357
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 2 cut(s) 28, 448
SsiI CCGC 2 cut(s) 398, 438
SspI AATATT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 2 cut(s) 66, 353
TaaI ACNGT 1 cut(s) 434
TaqI TCGA 1 cut(s) 428
TasI AATT 2 cut(s) 28, 448
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 439
TseI GCWGC 2 cut(s) 175, 178
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 439
VneI GTGCAC 1 cut(s) 234
VpaK11BI GGWCC 2 cut(s) 259, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.