Rmu_sc0008378.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008378.1
OG0009807
Physical Location & Seq
Reverse (-)
30585 .. 35611
5027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008378.1_g000008.1.cds

Sequence Viewer

Length: 930 bp
atgtatcttggcactggcaatctccaagctcaggagggatttccggtggcaaagcactctgttccttttacaggggtacatcaaaatttagctagtactggaaactatgcagcagcaagtctgggtgactttcttggcttaattctccttgcaggcaacttgtacctcttccttgaccctccagcacttgctgatgatatcctccaggaccttcttgttggtgtggaagtcgagggtcatgcgcgagtagtactgctcgatcacctgccaggaggacttcttcacggtcttggtgcggacgcgtcccatggcggaggagctgcggtggagctctgtgtgtgtgcgcgtgaggataacgtggcatcgaatgggatcatttgcacactttggaggacagatggtgcccacgtggcacttatccactatgctttgcgtgagaaagagatggagagtgtgaagaagcaaggaaattcgtcttcctcattgactgctgaactttttggcttcaaggagtcaccacccaagtcttcaactgggatttttgcttcgattttcccaccaccatcacaggtggtagggagaaactcttcaagctctgagctgactgaatattggcagaaacagtccttgggaaatcaagcatggagcaccaagcaaggtaatcaagctataagtagcgaagatgcacgctatagcttacccaacaaggacagcagttcagttcttcagggagaaagagcagaaccatgtcacctaagttcatctctttactatggtgggcaagaggtctattctcagtccccaagtacccctcatgcctctggatcctatcctatattcaaggaaaagggtggagaagatgatccaaatggaagcaatgcgaacagtgccgcccgaggaaattggtggcaaggttcgctctattattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

32.82

Weight (kDa)

5.22

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46880 AT3G46880 AT5G59080 AT5G59080
fragaria_vesca FvH4_3g37190
malus_domestica MD03G1083100.v1.1 MD11G1091200.v1.1
prunus_persica Prupe.6G067400_v2.0.a1 Prupe.6G067400_v2.0.a1
pyrus_communis pycom03g06610 pycom11g07580
rosa_chinensis RchiOBHm_Chr5g0066931
rosa_laevigata RLG00000035894
rosa_multiflora Rmu_sc0008378.1_g000008
rosa_roxburghii Rroxscaffold_1G00014190
rosa_rugosa Rorug05G0379900 Rorug05G0379900
rosa_samantha Rh5BG456500 Rh5CG478600 Rh5DG471300
rosa_wichuraiana Rw5G041100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 401
AccII CGCG 3 cut(s) 244, 302, 346
AciI CCGC 4 cut(s) 296, 312, 323, 891
AclWI GGATC 4 cut(s) 380, 819, 832, 857
AcsI RAATTY 2 cut(s) 85, 469
AcuI CTGAAG 1 cut(s) 710
AcvI CACGTG 1 cut(s) 409
AfaI GTAC 5 cut(s) 78, 97, 164, 252, 808
AfiI CCNNNNNNNGG 2 cut(s) 31, 71
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 4 cut(s) 508, 531, 591, 841
AjnI CCWGG 2 cut(s) 204, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
AluBI AGCT 8 cut(s) 29, 92, 320, 331, 594, 601, 668, 696
AluI AGCT 8 cut(s) 29, 92, 320, 331, 594, 601, 668, 696
Alw21I GWGCWC 2 cut(s) 333, 650
AlwI GGATC 4 cut(s) 380, 819, 832, 857
Ama87I CYCGRG 1 cut(s) 894
ApeKI GCWGC 3 cut(s) 110, 113, 320
ApoI RAATTY 2 cut(s) 85, 469
Asp700I GAANNNNTTC 1 cut(s) 586
AspLEI GCGC 2 cut(s) 244, 346
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 4 cut(s) 137, 254, 507, 743
AvaI CYCGRG 1 cut(s) 894
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 406
BamHI GGATCC 1 cut(s) 824
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 333
BbrPI CACGTG 1 cut(s) 409
BbsI GAAGAC 2 cut(s) 468, 519
Bbv12I GWGCWC 2 cut(s) 333, 650
BbvI GCAGC 3 cut(s) 122, 125, 307
BccI CCATC 3 cut(s) 392, 439, 571
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 2 cut(s) 206, 270
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 691
BfuAI ACCTGC 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 4 cut(s) 111, 114, 321, 891
BlsI GCNGC 4 cut(s) 112, 115, 322, 892
BmcAI AGTACT 2 cut(s) 97, 252
Bme1390I CCNGG 2 cut(s) 206, 270
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 894
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 403, 826
BmrFI CCNGG 2 cut(s) 206, 270
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 2 cut(s) 371, 673
BmuI ACTGGG 1 cut(s) 543
BpiI GAAGAC 2 cut(s) 468, 519
BpmI CTGGAG 2 cut(s) 165, 188
Bpu10I CCTNAGC 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 307, 627, 895
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 71
Bse1I ACTGG 3 cut(s) 19, 103, 538
Bse3DI GCAATG 1 cut(s) 883
BseBI CCWGG 2 cut(s) 206, 270
BseDI CCNNGG 3 cut(s) 307, 627, 895
BseLI CCNNNNNNNGG 2 cut(s) 31, 71
BseMI GCAATG 1 cut(s) 883
BseMII CTCAG 3 cut(s) 44, 588, 809
BseNI ACTGG 3 cut(s) 19, 103, 538
BseRI GAGGAG 1 cut(s) 330
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 3 cut(s) 122, 125, 307
Bsh1236I CGCG 3 cut(s) 244, 302, 346
BshNI GGYRCC 1 cut(s) 401
BsiHKAI GWGCWC 2 cut(s) 333, 650
BsiHKCI CYCGRG 1 cut(s) 894
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 289, 784
BslI CCNNNNNNNGG 2 cut(s) 31, 71
BsmFI GGGAC 2 cut(s) 289, 784
BsoBI CYCGRG 1 cut(s) 894
Bsp1286I GDGCHC 3 cut(s) 333, 406, 650
Bsp143I GATC 4 cut(s) 259, 372, 824, 862
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 4 cut(s) 296, 312, 323, 891
BspCNI CTCAG 3 cut(s) 43, 589, 808
BspFNI CGCG 3 cut(s) 244, 302, 346
BspLI GGNNCC 2 cut(s) 403, 826
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 4 cut(s) 380, 819, 832, 857
BspT107I GGYRCC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 883
BsrI ACTGG 3 cut(s) 19, 103, 538
BssECI CCNNGG 3 cut(s) 307, 627, 895
BssMI GATC 4 cut(s) 259, 372, 824, 862
BssT1I CCWWGG 2 cut(s) 307, 627
Bst2UI CCWGG 2 cut(s) 206, 270
Bst4CI ACNGT 3 cut(s) 287, 624, 887
Bst6I CTCTTC 2 cut(s) 173, 592
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 154, 688
BstDEI CTNAG 4 cut(s) 30, 597, 755, 795
BstDSI CCRYGG 1 cut(s) 307
BstENI CCTNNNNNAGG 1 cut(s) 69
BstFNI CGCG 3 cut(s) 244, 302, 346
BstHHI GCGC 2 cut(s) 244, 346
BstKTI GATC 4 cut(s) 262, 375, 827, 865
BstMBI GATC 4 cut(s) 259, 372, 824, 862
BstMWI GCNNNNNNNGC 3 cut(s) 410, 887, 916
BstNI CCWGG 2 cut(s) 206, 270
BstSCI CCNGG 2 cut(s) 204, 268
BstSFI CTRYAG 1 cut(s) 691
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 3 cut(s) 244, 302, 346
BstV1I GCAGC 3 cut(s) 122, 125, 307
BstV2I GAAGAC 2 cut(s) 468, 519
BstX2I RGATCY 1 cut(s) 824
BstYI RGATCY 1 cut(s) 824
BtgI CCRYGG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 12, 892
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 154, 688
CfoI GCGC 2 cut(s) 244, 346
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 2 cut(s) 291, 308
Csp6I GTAC 5 cut(s) 77, 96, 163, 251, 807
CviAII CATG 5 cut(s) 239, 308, 642, 747, 815
CviQI GTAC 5 cut(s) 77, 96, 163, 251, 807
DdeI CTNAG 4 cut(s) 30, 597, 755, 795
DpnI GATC 4 cut(s) 261, 374, 826, 864
DpnII GATC 4 cut(s) 259, 372, 824, 862
Eam1104I CTCTTC 2 cut(s) 173, 592
EarI CTCTTC 2 cut(s) 173, 592
EciI GGCGGA 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 307, 627
Eco24I GRGCYC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 710
Eco72I CACGTG 1 cut(s) 409
Eco88I CYCGRG 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 204, 268
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 307, 627
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 307, 627
FaeI CATG 5 cut(s) 242, 311, 645, 750, 818
FaqI GGGAC 2 cut(s) 289, 784
FatI CATG 5 cut(s) 238, 307, 641, 746, 814
Fnu4HI GCNGC 4 cut(s) 111, 114, 321, 891
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 4 cut(s) 111, 114, 321, 891
FspBI CTAG 1 cut(s) 93
GlaI GCGC 2 cut(s) 243, 345
GluI GCNGC 4 cut(s) 111, 114, 321, 891
GsuI CTGGAG 2 cut(s) 165, 188
HapII CCGG 1 cut(s) 44
HgaI GACGC 2 cut(s) 291, 308
HhaI GCGC 2 cut(s) 244, 346
Hin1II CATG 5 cut(s) 242, 311, 645, 750, 818
Hin6I GCGC 2 cut(s) 242, 344
HinP1I GCGC 2 cut(s) 242, 344
HinfI GANTC 1 cut(s) 512
HpaII CCGG 1 cut(s) 44
HphI GGTGA 4 cut(s) 137, 254, 507, 743
Hpy188I TCNGA 1 cut(s) 598
Hpy188III TCNNGA 2 cut(s) 32, 822
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 3 cut(s) 287, 624, 887
HpyCH4IV ACGT 2 cut(s) 357, 408
HpyCH4V TGCA 4 cut(s) 110, 152, 381, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 887, 916
HpyF3I CTNAG 4 cut(s) 30, 597, 755, 795
HpySE526I ACGT 2 cut(s) 357, 408
Hsp92II CATG 5 cut(s) 242, 311, 645, 750, 818
HspAI GCGC 2 cut(s) 242, 344
Kzo9I GATC 4 cut(s) 259, 372, 824, 862
LmnI GCTCC 3 cut(s) 317, 328, 645
Lsp1109I GCAGC 3 cut(s) 122, 125, 307
LweI GCATC 2 cut(s) 371, 673
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 357, 408
MaeIII GTNAC 3 cut(s) 125, 513, 749
MalI GATC 4 cut(s) 261, 374, 826, 864
MboI GATC 4 cut(s) 259, 372, 824, 862
MboII GAAGA 9 cut(s) 160, 272, 468, 469, 519, 579, 692, 716, 869
MflI RGATCY 1 cut(s) 824
MhlI GDGCHC 3 cut(s) 333, 406, 650
MluCI AATT 4 cut(s) 85, 141, 469, 901
MluI ACGCGT 1 cut(s) 300
MlyI GAGTC 1 cut(s) 521
MroXI GAANNNNTTC 1 cut(s) 586
MseI TTAA 1 cut(s) 140
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 206, 270
MvaI CCWGG 2 cut(s) 206, 270
MvnI CGCG 3 cut(s) 244, 302, 346
MwoI GCNNNNNNNGC 3 cut(s) 410, 887, 916
NcoI CCATGG 1 cut(s) 307
NdeII GATC 4 cut(s) 259, 372, 824, 862
NlaIII CATG 5 cut(s) 242, 311, 645, 750, 818
NlaIV GGNNCC 2 cut(s) 403, 826
NmuCI GTSAC 3 cut(s) 125, 513, 749
PaqCI CACCTGC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 586
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 4 cut(s) 112, 115, 322, 892
PleI GAGTC 1 cut(s) 520
PmaCI CACGTG 1 cut(s) 409
PmlI CACGTG 1 cut(s) 409
PpsI GAGTC 1 cut(s) 520
Ppu21I YACGTR 1 cut(s) 409
PpuMI RGGWCCY 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 204, 268
PspCI CACGTG 1 cut(s) 409
PspGI CCWGG 2 cut(s) 204, 268
PspN4I GGNNCC 2 cut(s) 403, 826
PspPI GGNCC 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 208
PsuI RGATCY 1 cut(s) 824
RsaI GTAC 5 cut(s) 78, 97, 164, 252, 808
RsaNI GTAC 5 cut(s) 77, 96, 163, 251, 807
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 4 cut(s) 111, 114, 321, 891
Sau3AI GATC 4 cut(s) 259, 372, 824, 862
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 2 cut(s) 97, 252
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 2 cut(s) 206, 270
SduI GDGCHC 3 cut(s) 333, 406, 650
SfaNI GCATC 2 cut(s) 371, 673
SfcI CTRYAG 1 cut(s) 691
SinI GGWCC 1 cut(s) 208
Sse9I AATT 4 cut(s) 85, 141, 469, 901
SsiI CCGC 4 cut(s) 296, 312, 323, 891
SspI AATATT 1 cut(s) 611
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 204, 268
StyI CCWWGG 2 cut(s) 307, 627
TaaI ACNGT 3 cut(s) 287, 624, 887
TaiI ACGT 2 cut(s) 360, 411
TaqI TCGA 4 cut(s) 231, 258, 365, 548
TasI AATT 4 cut(s) 85, 141, 469, 901
TatI WGTACW 2 cut(s) 95, 250
TauI GCSGC 1 cut(s) 893
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 2 cut(s) 19, 892
TseFI GTSAC 3 cut(s) 125, 513, 749
TseI GCWGC 3 cut(s) 110, 113, 320
Tsp45I GTSAC 3 cut(s) 125, 513, 749
TspDTI ATGAA 1 cut(s) 750
TspRI CASTG 2 cut(s) 19, 892
VpaK11BI GGWCC 1 cut(s) 208
XagI CCTNNNNNAGG 1 cut(s) 69
XapI RAATTY 2 cut(s) 85, 469
XmnI GAANNNNTTC 1 cut(s) 586
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 2 cut(s) 97, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.