FvH4_3g37190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009807
Physical Location & Seq
Forward (+)
31860700 .. 31862562
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37190.t1

Sequence Viewer

Length: 582 bp
ATGGAGAGTGTGAAGAAGCAAGGGAGTTCGTCTTCCTCATTCACTGCTGAACTCTTTGGGTTCAAGGACTCACCACCCAAGTCTTCAACTGGGATTTTTGCTTCGATTTTCCCACCACCATCGCAGGTGGTGGGGAGAAACTCTTCAAGCTCTGAGCTGACTGAATACTGGCGTAAACAGTCCTTGGGAAATCAAGCATGGAACACCAAGCAAGCTATAAGTAGCGAAGATGCACGCTATAGCTTACCCAACAAGGAACGCAGTTCAGTTCTTCAGCATGAAAGAGCAGAACCATGTCACCTAAGTTCATCTCTTTACTATGGTGGGCAAGAGGTCTATTCTCAGTCCCCAAGTACCCCTCATGCCTCTGGATCCTACCCTCTAGTGAGTCTTGATGATTCAAGAAAGATGCTGGAGAAGATGATCCAAATGGAAGCAATGCGAACAGTGCCGCCCGAGGAAACTGGTGGGAAGGTTCACTCTATTATTAGGACCTTGCCTTCCCTGGCCATGAACTCTTCATCTATTATCAAGGAATTCATGAGGGCTTGGTATTTTAAGTATGGTGAATATGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.51

Weight (kDa)

8.58

Isoelectric Point (pI)

66.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46880 AT3G46880 AT5G59080 AT5G59080
fragaria_vesca FvH4_3g37190
malus_domestica MD03G1083100.v1.1 MD11G1091200.v1.1
prunus_persica Prupe.6G067400_v2.0.a1 Prupe.6G067400_v2.0.a1
pyrus_communis pycom03g06610 pycom11g07580
rosa_chinensis RchiOBHm_Chr5g0066931
rosa_laevigata RLG00000035894
rosa_multiflora Rmu_sc0008378.1_g000008
rosa_roxburghii Rroxscaffold_1G00014190
rosa_rugosa Rorug05G0379900 Rorug05G0379900
rosa_samantha Rh5BG456500 Rh5CG478600 Rh5DG471300
rosa_wichuraiana Rw5G041100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 115
AciI CCGC 1 cut(s) 452
AclWI GGATC 3 cut(s) 366, 379, 418
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 1 cut(s) 355
AgsI TTSAA 4 cut(s) 64, 87, 147, 402
AjnI CCWGG 1 cut(s) 504
AluBI AGCT 4 cut(s) 150, 157, 215, 243
AluI AGCT 4 cut(s) 150, 157, 215, 243
AlwI GGATC 3 cut(s) 366, 379, 418
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 1 cut(s) 507
ApoI RAATTY 1 cut(s) 536
Asp700I GAANNNNTTC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 3 cut(s) 63, 290, 578
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 492
BalI TGGCCA 1 cut(s) 509
BamHI GGATCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 24, 75
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 506
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 1 cut(s) 506
Bme18I GGWCC 1 cut(s) 492
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 506
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 220, 399
BmuI ACTGGG 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 24, 75
BpmI CTGGAG 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 183, 456, 504
Bse1I ACTGG 3 cut(s) 94, 173, 469
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 506
BseDI CCNNGG 3 cut(s) 183, 456, 504
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 144, 356
BseNI ACTGG 3 cut(s) 94, 173, 469
BshFI GGCC 1 cut(s) 509
BsiHKCI CYCGRG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 1 cut(s) 509
BsoBI CYCGRG 1 cut(s) 455
Bsp143I GATC 2 cut(s) 371, 423
BspACI CCGC 1 cut(s) 452
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 145, 355
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 373
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 3 cut(s) 366, 379, 418
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 3 cut(s) 94, 173, 469
BssECI CCNNGG 3 cut(s) 183, 456, 504
BssMI GATC 2 cut(s) 371, 423
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 180, 448
Bst6I CTCTTC 2 cut(s) 148, 523
BstC8I GCNNGC 2 cut(s) 213, 235
BstDEI CTNAG 3 cut(s) 153, 302, 342
BstKTI GATC 2 cut(s) 374, 426
BstMBI GATC 2 cut(s) 371, 423
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 504
BstSFI CTRYAG 1 cut(s) 238
BstV2I GAAGAC 2 cut(s) 24, 75
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 1 cut(s) 509
BtgZI GCGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 453
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 213, 235
CciI TCATGA 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 1 cut(s) 354
CviAII CATG 6 cut(s) 198, 278, 294, 362, 511, 541
CviJI RGCY 6 cut(s) 150, 157, 215, 243, 509, 548
CviKI_1 RGCY 6 cut(s) 150, 157, 215, 243, 509, 548
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 3 cut(s) 153, 302, 342
DpnI GATC 2 cut(s) 373, 425
DpnII GATC 2 cut(s) 371, 423
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 148, 523
EarI CTCTTC 2 cut(s) 148, 523
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 492
EcoRI GAATTC 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 6 cut(s) 201, 281, 297, 365, 514, 544
FaqI GGGAC 1 cut(s) 331
FatI CATG 6 cut(s) 197, 277, 293, 361, 510, 540
Fnu4HI GCNGC 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 1 cut(s) 383
GluI GCNGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 509
Hin1II CATG 6 cut(s) 201, 281, 297, 365, 514, 544
HinfI GANTC 3 cut(s) 68, 388, 398
HphI GGTGA 3 cut(s) 63, 290, 578
Hpy166II GTNNAC 2 cut(s) 176, 478
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 4 cut(s) 369, 392, 402, 541
Hpy8I GTNNAC 2 cut(s) 176, 478
HpyAV CCTTC 2 cut(s) 466, 510
HpyCH4III ACNGT 2 cut(s) 180, 448
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 153, 302, 342
Hsp92II CATG 6 cut(s) 201, 281, 297, 365, 514, 544
Kzo9I GATC 2 cut(s) 371, 423
LpnPI CCDG 8 cut(s) 75, 110, 154, 354, 398, 450, 491, 518
LweI GCATC 2 cut(s) 220, 399
MaeI CTAG 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 373, 425
MboI GATC 2 cut(s) 371, 423
MboII GAAGA 8 cut(s) 24, 25, 75, 135, 239, 263, 430, 510
MflI RGATCY 1 cut(s) 371
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 1 cut(s) 536
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 2 cut(s) 62, 397
MnlI CCTC 7 cut(s) 46, 325, 369, 376, 390, 451, 537
Mox20I TGGCCA 1 cut(s) 509
MroXI GAANNNNTTC 1 cut(s) 142
MscI TGGCCA 1 cut(s) 509
MseI TTAA 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 506
MvaI CCWGG 1 cut(s) 506
MwoI GCNNNNNNNGC 1 cut(s) 448
NdeII GATC 2 cut(s) 371, 423
NlaIII CATG 6 cut(s) 201, 281, 297, 365, 514, 544
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 296
PagI TCATGA 1 cut(s) 540
PaqCI CACCTGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 1 cut(s) 453
PleI GAGTC 2 cut(s) 62, 396
PpsI GAGTC 2 cut(s) 62, 396
PpuMI RGGWCCY 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 504
PspGI CCWGG 1 cut(s) 504
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 492
PspPPI RGGWCCY 1 cut(s) 492
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 2 cut(s) 371, 423
Sau96I GGNCC 1 cut(s) 492
SchI GAGTC 2 cut(s) 62, 397
ScrFI CCNGG 1 cut(s) 506
SetI ASST 9 cut(s) 129, 152, 159, 217, 245, 303, 336, 477, 497
SfaNI GCATC 2 cut(s) 220, 399
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 492
Sse9I AATT 1 cut(s) 536
SsiI CCGC 1 cut(s) 452
SspMI CTAG 1 cut(s) 383
StyD4I CCNGG 1 cut(s) 504
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 180, 448
TaqI TCGA 1 cut(s) 104
TasI AATT 1 cut(s) 536
TauI GCSGC 1 cut(s) 454
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 2 cut(s) 49, 453
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 5 cut(s) 294, 297, 510, 527, 529
TspRI CASTG 2 cut(s) 49, 453
VpaK11BI GGWCC 1 cut(s) 492
XapI RAATTY 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.