Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009807

Physical Location & Seq

Genomic Coordinates Reverse (-)

5182723 .. 5184735

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGAGTAACAATAAGAATCAAGGCAATTCAGGTTCCTCATTGACTGCTGATCTTTTTGGTGCCAAGGACAAGGAGTCTCCCCACAAGTCTTCTACTGGGATTTTTGCTTCCATTTTCCCACCTCCATCACAGGTGGTTGGGAGGAACTCTTCAAGCTCTGAGCTGACAGAATATTGGCAGAAGCAGTCGTCCTTGGGAAATCATGCATGGAACTCCAAGCAAGCTATAAGTGGCGAAGGTGCACACTATAGCTTACCCAACAAGGACCGGAGTTCAGTTCTTCAGGAAGAAAGAGCAGAACCATGTCATCTAAGTTCATCTATTTACTATGGTGGGCAAGAGGTGTATTCCCAGTCCCCAAGTACCCATGCCTCTGGATCCTATCCTATATTCAAGAAAGATGGGGGAGAAGATGATCCAAATGGAATCAACTCGAACAGTGCTGCCCGAGGAAATTGGTGGCAAGGTTCGCTCTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.44

Weight (kDa)

5.92

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46880 AT3G46880 AT5G59080 AT5G59080
fragaria_vesca	FvH4_3g37190
malus_domestica	MD03G1083100.v1.1 MD11G1091200.v1.1
prunus_persica	Prupe.6G067400_v2.0.a1 Prupe.6G067400_v2.0.a1
pyrus_communis	pycom03g06610 pycom11g07580
rosa_chinensis	RchiOBHm_Chr5g0066931
rosa_laevigata	RLG00000035894
rosa_multiflora	Rmu_sc0008378.1_g000008
rosa_roxburghii	Rroxscaffold_1G00014190
rosa_rugosa	Rorug05G0379900 Rorug05G0379900
rosa_samantha	Rh5BG456500 Rh5CG478600 Rh5DG471300
rosa_wichuraiana	Rw5G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AclWI	GGATC	3 cut(s)	375, 388, 413
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	156, 397
AhdI	GACNNNNNGTC	1 cut(s)	76
AluBI	AGCT	4 cut(s)	159, 166, 227, 255
AluI	AGCT	4 cut(s)	159, 166, 227, 255
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	84
Alw44I	GTGCAC	1 cut(s)	243
AlwI	GGATC	3 cut(s)	375, 388, 413
Ama87I	CYCGRG	1 cut(s)	450
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	136, 398
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	250
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	3 cut(s)	37, 64, 382
BmrI	ACTGGG	2 cut(s)	108, 349
BmuI	ACTGGG	2 cut(s)	108, 349
BpiI	GAAGAC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	66, 195, 451
BsaWI	WCCGGW	1 cut(s)	270
Bse1I	ACTGG	2 cut(s)	103, 355
BseDI	CCNNGG	3 cut(s)	66, 195, 451
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	103, 355
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	433
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	52, 380, 418
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	37, 64, 382
BspPI	GGATC	3 cut(s)	375, 388, 413
BspT107I	GGYRCC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	103, 355
BssECI	CCNNGG	3 cut(s)	66, 195, 451
BssMI	GATC	3 cut(s)	52, 380, 418
BssT1I	CCWWGG	2 cut(s)	66, 195
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	162, 314
BstKTI	GATC	3 cut(s)	55, 383, 421
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	3 cut(s)	52, 380, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	380
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	4 cut(s)	206, 210, 306, 371
CviJI	RGCY	4 cut(s)	159, 166, 227, 255
CviKI_1	RGCY	4 cut(s)	159, 166, 227, 255
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	162, 314
DpnI	GATC	3 cut(s)	54, 382, 420
DpnII	GATC	3 cut(s)	52, 380, 418
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	66, 195
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	450
EcoT14I	CCWWGG	2 cut(s)	66, 195
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	66, 195
FaeI	CATG	4 cut(s)	209, 213, 309, 374
FaiI	YATR	8 cut(s)	207, 211, 230, 252, 307, 333, 372, 392
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	205, 209, 305, 370
Fnu4HI	GCNGC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	447
GluI	GCNGC	1 cut(s)	447
HapII	CCGG	1 cut(s)	271
Hin1II	CATG	4 cut(s)	209, 213, 309, 374
HinfI	GANTC	3 cut(s)	19, 77, 429
HpaII	CCGG	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	3 cut(s)	287, 378, 397
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	2 cut(s)	209, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	2 cut(s)	162, 314
Hsp92II	CATG	4 cut(s)	209, 213, 309, 374
Kzo9I	GATC	3 cut(s)	52, 380, 418
LpnPI	CCDG	7 cut(s)	18, 84, 119, 272, 284, 363, 368
Lsp1109I	GCAGC	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	54, 382, 420
MboI	GATC	3 cut(s)	52, 380, 418
MboII	GAAGA	5 cut(s)	84, 144, 275, 302, 425
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	28, 457
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	6 cut(s)	49, 135, 138, 337, 385, 446
Mph1103I	ATGCAT	1 cut(s)	211
MspI	CCGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	472
NdeII	GATC	3 cut(s)	52, 380, 418
NlaIII	CATG	4 cut(s)	209, 213, 309, 374
NlaIV	GGNNCC	3 cut(s)	37, 64, 382
NsiI	ATGCAT	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	19, 429
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	37, 64, 382
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	3 cut(s)	52, 380, 418
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	2 cut(s)	28, 457
SspI	AATATT	1 cut(s)	176
StyI	CCWWGG	2 cut(s)	66, 195
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	1 cut(s)	437
TasI	AATT	2 cut(s)	28, 457
TfiI	GAWTC	2 cut(s)	19, 429
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	448
VneI	GTGCAC	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.