Rh5BG456500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
73024309 .. 73030673
6365 bp
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UTR
Exon/CDS
Intron
Rh5BG456500.1

Sequence Viewer

Length: 477 bp
ATGGAGAGTGTGAAGAAGCAAGGAAATTCGTCTTCCTCATTAACTGCTGAACTTTTTGGGTTCAAGGAGTCACCACCCAAGTCTTCAACTGGGATTTTTGCTTCGATTTTCCCACCACCATCACAGGTGGTAGGGAGAAACTCTTCAAGCTCTGAGCTGACTGAATATTGGCAGAAACAGTCCTTGGGAAATCAAGCATGGAGCACCAAGCAAGCTATAAGTAGCGAAGATGCACGCTATAGCTTACCCAACAAGGACAGCAGTTCAGTTCTTCAGGGAGAAAGAGCAGAACCATGTCACCTAAGTTCATCTCTTTACTATGGTGGGCAAGAGGTCTATTCTCAGTCCCCAAGTACCCCTCATGCCTCTGGATCCTATCCTATATTCAAGGAAAAGGGTGGAGAAGATGATCCAAATGGAAGCAATGCGAACAGTGCCGCCCGAGGAAATTGGTGGCAAGGTTCGCTCTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.09

Weight (kDa)

5.68

Isoelectric Point (pI)

61.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009807)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 438
AclWI GGATC 3 cut(s) 366, 379, 404
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 1 cut(s) 355
AgsI TTSAA 4 cut(s) 64, 87, 147, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 4 cut(s) 150, 157, 215, 243
AluI AGCT 4 cut(s) 150, 157, 215, 243
Alw21I GWGCWC 1 cut(s) 206
AlwI GGATC 3 cut(s) 366, 379, 404
Ama87I CYCGRG 1 cut(s) 441
ApoI RAATTY 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 63, 290
AvaI CYCGRG 1 cut(s) 441
BamHI GGATCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 24, 75
Bbv12I GWGCWC 1 cut(s) 206
BccI CCATC 1 cut(s) 127
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 441
BmiI GGNNCC 1 cut(s) 373
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 24, 75
BsaJI CCNNGG 2 cut(s) 183, 442
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 430
BseDI CCNNGG 2 cut(s) 183, 442
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 2 cut(s) 144, 356
BseNI ACTGG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 371, 409
BspACI CCGC 1 cut(s) 438
BspCNI CTCAG 2 cut(s) 145, 355
BspLI GGNNCC 1 cut(s) 373
BspPI GGATC 3 cut(s) 366, 379, 404
BsrDI GCAATG 1 cut(s) 430
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 183, 442
BssMI GATC 2 cut(s) 371, 409
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 180, 434
Bst6I CTCTTC 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 213, 235
BstDEI CTNAG 3 cut(s) 153, 302, 342
BstKTI GATC 2 cut(s) 374, 412
BstMBI GATC 2 cut(s) 371, 409
BstMWI GCNNNNNNNGC 2 cut(s) 434, 463
BstSFI CTRYAG 1 cut(s) 238
BstV2I GAAGAC 2 cut(s) 24, 75
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 213, 235
Csp6I GTAC 1 cut(s) 354
CviAII CATG 3 cut(s) 198, 294, 362
CviJI RGCY 4 cut(s) 150, 157, 215, 243
CviKI_1 RGCY 4 cut(s) 150, 157, 215, 243
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 3 cut(s) 153, 302, 342
DpnI GATC 2 cut(s) 373, 411
DpnII GATC 2 cut(s) 371, 409
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 201, 297, 365
FaiI YATR 7 cut(s) 199, 218, 240, 295, 321, 363, 383
FaqI GGGAC 1 cut(s) 331
FatI CATG 3 cut(s) 197, 293, 361
Fnu4HI GCNGC 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 438
GluI GCNGC 1 cut(s) 438
Hin1II CATG 3 cut(s) 201, 297, 365
HinfI GANTC 1 cut(s) 68
HphI GGTGA 2 cut(s) 63, 290
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 369
HpyCH4III ACNGT 2 cut(s) 180, 434
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 463
HpyF3I CTNAG 3 cut(s) 153, 302, 342
Hsp92II CATG 3 cut(s) 201, 297, 365
Kzo9I GATC 2 cut(s) 371, 409
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 75, 110, 260, 354
LweI GCATC 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 69, 296
MalI GATC 2 cut(s) 373, 411
MboI GATC 2 cut(s) 371, 409
MboII GAAGA 7 cut(s) 24, 25, 75, 135, 239, 263, 416
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 2 cut(s) 25, 448
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 5 cut(s) 46, 325, 369, 376, 437
MroXI GAANNNNTTC 1 cut(s) 142
MseI TTAA 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 434, 463
NdeII GATC 2 cut(s) 371, 409
NlaIII CATG 3 cut(s) 201, 297, 365
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 69, 296
PdmI GAANNNNTTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 439
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 373
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 371, 409
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 206
SetI ASST 8 cut(s) 129, 152, 159, 217, 245, 303, 336, 463
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 238
Sse9I AATT 2 cut(s) 25, 448
SsiI CCGC 1 cut(s) 438
SspI AATATT 1 cut(s) 167
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 180, 434
TaqI TCGA 1 cut(s) 104
TasI AATT 2 cut(s) 25, 448
TauI GCSGC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 2 cut(s) 69, 296
Tsp45I GTSAC 2 cut(s) 69, 296
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.