AT3G46990

UPF0503 protein At3g09070

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
17311672 .. 17313752
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46990.1

Sequence Viewer

Length: 1644 bp
ATGGCTAACGTCAAACAAACCAATCGCCGTCGTTCCTCCTCCTCATGCCACCGTCACCCTTCCGCTAAACCAACCAGCGGTTTCTGCGCTTCCTGTCTTCGTGAACGTCTCGTAACAATAGAAGCTCAGTCTTCTTCTCTCGCCGCCGTTCAGACTCCCGAGCTCCGTCGTATTCGATCATACTCCGTTCGTAACGCATCAGTCTCCGTTTCGGATCAGCCGCGACGGAGATCATGTGACGTTAGGTCAAGCGCAAGCTCTCTCCTGGACTTGTTTGTCGATGATGACGAAGAACGGGTGGATAGTTCGATTCGAAAGCCTCTGGTTCCAGATTTAAAAGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGATTACTACGATGGAGAAGATATAAAAGGTTTTGATGAAGGCAAGCCGAGGAAGATCGTCGAAGAGAACAAGACGATGAAGGAGTTCATAGATCTAGATTGGAGAAACCAGATTAAGAAGAACAATGGCAAAGATTTGAAGGAAATAGCATCGGTTTTGAGCAGGAGATTGAAGAATTTTACATTGAATAAGAGAAATGACGAAAAATCAGATTCCAGATTCGCCGGAATTGTGAATGGTCGTCACTCTTCTGATGTGGATCCTAGATTGTCTTTTGATGGAGGTAGGATCTCGTTTGAGAAACCTAGGTCTTCATGGGATGGTTGCTTGATTGAAAAATCATATCACAAGCTTACGACATTGTCTACTGTGACGGAAGATGCTAAAGCTAAATGTGGTGTTGAAGAAGAAGAAGTAGAGGAGAAGGAGAAGAGTCCAGGTGGGACGGTTCAAACGAAGAACTATTACTCGGATTCTCGTCGGAGAAGGAGTTTTGATCGGTCGGTTTCGATTAAGAGACAAGGATTGCTTGAGGTTGATGAATTGAGAGGTATATCGAATGCAAAGGTATCACCTGAAACTGTAGGTTTGTTTCATGGTGCTAAGTTATTGGTTACAGAGAAGGAACTTAGGGATTCGAATTGGTATTCGATTAAAAATGTCAAACCAGAGAGTAAAGAATTAGTTTCTAAAGGAAAGATTTGTATTGCTGCTGGTGGTGAGGGGAAGAAGCAGGATAGTGTTGAGTTAAAGAAACCTAGAAAGAAATGGCCAAAGGGATGGAACATTTGGGGATTGATACAGAGGAAAAACGAGGCGAAGAACGAGATAAAGACTGAGCAAATTTTGAAACTTGAAGGAAATGCGGTTGAGGGTTCTTTGGCTGAATCTCTGTTAAAGCTTAGGAGAGTAGGTAAAGGAGAAACCAATGTTGGTGTTAGTGAGAAGCTTTTGAAAAGCTATAGTGTAAGTGCGAGAAAGTCTTGCGATGGCGTGCGTAGTGGTGCTAACATTGTCAGTGGCTTTGAAGGTGGAAGAAGCTCTTGTGATGGTCTGTTTCATGGATCTATTAACAGTGTTGAGGCTGGAAGAAACTCTTGTGATGGATTGGTTAATGGCATTGAAGGCAAACAAAATCATCATCTTCTCCAGAGAAACGCAAATGTTGGTACGTGCAGCCAAGAAAACCTTGAGAAGAGTATGTTTAGATTCTATCTGAGTCCGGTAAAGAGCCATAAGACTAGCAAATCCGGGAAGAGTAGGCTGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

61.34

Weight (kDa)

9.21

Isoelectric Point (pI)

63.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF740 PF05340 7 - 46 8.9e-09 Protein of unknown function (DUF740)
DUF740 PF05340 48 - 145 2.7e-10 Protein of unknown function (DUF740)
DUF740 PF05340 116 - 535 6.3e-57 Protein of unknown function (DUF740)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 734
AccII CGCG 1 cut(s) 223
AciI CCGC 5 cut(s) 63, 78, 144, 221, 1235
AclWI GGATC 5 cut(s) 222, 623, 636, 665, 1441
AcoI YGGCCR 1 cut(s) 1139
AcsI RAATTY 2 cut(s) 544, 1212
AfaI GTAC 1 cut(s) 1540
AfiI CCNNNNNNNGG 1 cut(s) 77
AhdI GACNNNNNGTC 1 cut(s) 244
AjnI CCWGG 2 cut(s) 264, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 1284, 1316
AluBI AGCT 9 cut(s) 125, 163, 258, 721, 758, 1270, 1318, 1329, 1410
AluI AGCT 9 cut(s) 125, 163, 258, 721, 758, 1270, 1318, 1329, 1410
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 3 cut(s) 113, 208, 880
AlwI GGATC 5 cut(s) 222, 623, 636, 665, 1441
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 1139
ApeKI GCWGC 2 cut(s) 1079, 1545
ApoI RAATTY 2 cut(s) 544, 1212
Asp700I GAANNNNTTC 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 674
AspLEI GCGC 2 cut(s) 89, 254
AsuC2I CCSGG 1 cut(s) 1621
AsuHPI GGTGA 3 cut(s) 47, 933, 1100
AsuII TTCGAA 2 cut(s) 313, 1007
AvaI CYCGRG 1 cut(s) 158
AvrII CCTAGG 1 cut(s) 674
BalI TGGCCA 1 cut(s) 1141
BamHI GGATCC 1 cut(s) 628
BanII GRGCYC 1 cut(s) 165
BarI GAAGNNNNNNTAC 2 cut(s) 818, 850
BbsI GAAGAC 3 cut(s) 89, 123, 672
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 1066, 1557
BccI CCATC 7 cut(s) 374, 641, 683, 1143, 1352, 1412, 1466
BceAI ACGGC 2 cut(s) 12, 131
BciT130I CCWGG 2 cut(s) 266, 807
BcnI CCSGG 1 cut(s) 1621
BcoDI GTCTC 3 cut(s) 113, 208, 880
BfaI CTAG 5 cut(s) 464, 633, 675, 1128, 1611
BfmI CTRYAG 2 cut(s) 951, 1330
BglII AGATCT 1 cut(s) 460
BisI GCNGC 4 cut(s) 144, 221, 1080, 1546
BlnI CCTAGG 1 cut(s) 674
BlsI GCNGC 4 cut(s) 145, 222, 1081, 1547
Bme1390I CCNGG 3 cut(s) 266, 807, 1621
BmeRI GACNNNNNGTC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 327, 630
BmrFI CCNGG 3 cut(s) 266, 807, 1621
BmsI GCATC 3 cut(s) 206, 527, 739
BpiI GAAGAC 3 cut(s) 89, 123, 672
BpmI CTGGAG 1 cut(s) 1502
Bpu10I CCTNAGC 1 cut(s) 1271
Bpu14I TTCGAA 2 cut(s) 313, 1007
BpuEI CTTGAG 2 cut(s) 920, 1580
BpuMI CCSGG 1 cut(s) 1621
BsaAI YACGTR 1 cut(s) 1542
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 416, 674
BsaWI WCCGGW 1 cut(s) 1591
BsaXI ACNNNNNCTCC 6 cut(s) 220, 250, 844, 874, 1267, 1297
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 2 cut(s) 266, 807
BseDI CCNNGG 2 cut(s) 416, 674
BseGI GGATG 2 cut(s) 694, 1154
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 3 cut(s) 140, 1197, 1577
BseRI GAGGAG 4 cut(s) 28, 31, 356, 803
BseXI GCAGC 2 cut(s) 1066, 1557
BsgI GTGCAG 1 cut(s) 1564
Bsh1236I CGCG 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 872
BshFI GGCC 1 cut(s) 1141
BsiEI CGRYCG 1 cut(s) 872
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 3 cut(s) 594, 1592, 1620
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 3 cut(s) 113, 208, 880
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 1 cut(s) 1141
BsoBI CYCGRG 1 cut(s) 158
Bsp119I TTCGAA 2 cut(s) 313, 1007
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 9 cut(s) 176, 214, 230, 423, 460, 628, 657, 865, 1433
BspACI CCGC 5 cut(s) 63, 78, 144, 221, 1235
BspANI GGCC 1 cut(s) 1141
BspCNI CTCAG 3 cut(s) 139, 1198, 1578
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 327, 630
BspPI GGATC 5 cut(s) 222, 623, 636, 665, 1441
BspT104I TTCGAA 2 cut(s) 313, 1007
BssECI CCNNGG 2 cut(s) 416, 674
BssMI GATC 9 cut(s) 176, 214, 230, 423, 460, 628, 657, 865, 1433
BssT1I CCWWGG 1 cut(s) 674
Bst2UI CCWGG 2 cut(s) 266, 807
Bst4CI ACNGT 5 cut(s) 53, 739, 817, 952, 1445
Bst6I CTCTTC 6 cut(s) 345, 426, 622, 794, 1559, 1619
BstBAI YACGTR 1 cut(s) 1542
BstBI TTCGAA 2 cut(s) 313, 1007
BstC8I GCNNGC 3 cut(s) 256, 413, 1364
BstDEI CTNAG 6 cut(s) 126, 972, 998, 1206, 1271, 1586
BstF5I GGATG 2 cut(s) 694, 1154
BstFNI CGCG 1 cut(s) 223
BstHHI GCGC 2 cut(s) 89, 254
BstKTI GATC 9 cut(s) 179, 217, 233, 426, 463, 631, 660, 868, 1436
BstMAI GTCTC 3 cut(s) 113, 208, 880
BstMBI GATC 9 cut(s) 176, 214, 230, 423, 460, 628, 657, 865, 1433
BstMCI CGRYCG 1 cut(s) 872
BstMWI GCNNNNNNNGC 2 cut(s) 84, 1494
BstNI CCWGG 2 cut(s) 266, 807
BstSCI CCNGG 3 cut(s) 264, 805, 1619
BstSFI CTRYAG 2 cut(s) 951, 1330
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 1066, 1557
BstV2I GAAGAC 3 cut(s) 89, 123, 672
BstX2I RGATCY 4 cut(s) 460, 628, 657, 1433
BstXI CCANNNNNNTGG 1 cut(s) 1149
BstYI RGATCY 4 cut(s) 460, 628, 657, 1433
BsuRI GGCC 1 cut(s) 1141
BtgZI GCGATG 1 cut(s) 1371
BtsCI GGATG 2 cut(s) 694, 1154
BtsIMutI CAGTG 2 cut(s) 1393, 1450
Cac8I GCNNGC 3 cut(s) 256, 413, 1364
CfoI GCGC 2 cut(s) 89, 254
Csp6I GTAC 1 cut(s) 1539
CviAII CATG 5 cut(s) 45, 234, 684, 965, 1430
CviQI GTAC 1 cut(s) 1539
DdeI CTNAG 6 cut(s) 126, 972, 998, 1206, 1271, 1586
DpnI GATC 9 cut(s) 178, 216, 232, 425, 462, 630, 659, 867, 1435
DpnII GATC 9 cut(s) 176, 214, 230, 423, 460, 628, 657, 865, 1433
DraI TTTAAA 1 cut(s) 336
DrdI GACNNNNNNGTC 1 cut(s) 275
DriI GACNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 1139
Eam1104I CTCTTC 6 cut(s) 345, 426, 622, 794, 1559, 1619
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 6 cut(s) 345, 426, 622, 794, 1559, 1619
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 264, 805
EcoT14I CCWWGG 1 cut(s) 674
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 674
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 5 cut(s) 48, 237, 687, 968, 1433
FalI AAGNNNNNCTT 8 cut(s) 882, 914, 1396, 1428, 1450, 1482, 1542, 1574
FaqI GGGAC 1 cut(s) 826
FatI CATG 5 cut(s) 44, 233, 683, 964, 1429
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 4 cut(s) 144, 221, 1080, 1546
FokI GGATG 2 cut(s) 701, 1161
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 4 cut(s) 144, 221, 1080, 1546
FspBI CTAG 5 cut(s) 464, 633, 675, 1128, 1611
GlaI GCGC 2 cut(s) 88, 253
GluI GCNGC 4 cut(s) 144, 221, 1080, 1546
GsuI CTGGAG 1 cut(s) 1502
HaeIII GGCC 1 cut(s) 1141
HapII CCGG 3 cut(s) 594, 1592, 1620
HhaI GCGC 2 cut(s) 89, 254
Hin1II CATG 5 cut(s) 48, 237, 687, 968, 1433
Hin6I GCGC 2 cut(s) 87, 252
HinP1I GCGC 2 cut(s) 87, 252
HindIII AAGCTT 3 cut(s) 719, 1268, 1316
HpaII CCGG 3 cut(s) 594, 1592, 1620
HphI GGTGA 3 cut(s) 47, 933, 1100
Hpy166II GTNNAC 2 cut(s) 104, 735
Hpy188I TCNGA 7 cut(s) 153, 214, 580, 622, 841, 852, 1587
Hpy188III TCNNGA 6 cut(s) 101, 158, 329, 464, 585, 1519
Hpy8I GTNNAC 2 cut(s) 104, 735
Hpy99I CGWCG 5 cut(s) 33, 171, 228, 431, 852
HpyCH4III ACNGT 5 cut(s) 53, 739, 817, 952, 1445
HpyCH4IV ACGT 4 cut(s) 9, 106, 240, 1541
HpyCH4V TGCA 2 cut(s) 932, 1545
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 1494
HpyF3I CTNAG 6 cut(s) 126, 972, 998, 1206, 1271, 1586
HpySE526I ACGT 4 cut(s) 9, 106, 240, 1541
Hsp92II CATG 5 cut(s) 48, 237, 687, 968, 1433
HspAI GCGC 2 cut(s) 87, 252
Kzo9I GATC 9 cut(s) 176, 214, 230, 423, 460, 628, 657, 865, 1433
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 2 cut(s) 1066, 1557
LweI GCATC 3 cut(s) 206, 527, 739
MaeI CTAG 5 cut(s) 464, 633, 675, 1128, 1611
MaeII ACGT 4 cut(s) 9, 106, 240, 1541
MaeIII GTNAC 7 cut(s) 53, 112, 191, 236, 611, 739, 982
MalI GATC 9 cut(s) 178, 216, 232, 425, 462, 630, 659, 867, 1435
MboI GATC 9 cut(s) 176, 214, 230, 423, 460, 628, 657, 865, 1433
MflI RGATCY 4 cut(s) 460, 628, 657, 1433
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 1141
MluCI AATT 7 cut(s) 544, 597, 911, 1009, 1049, 1212, 1639
MluNI TGGCCA 1 cut(s) 1141
MlyI GAGTC 3 cut(s) 148, 811, 1597
MmeI TCCRAC 1 cut(s) 830
Mox20I TGGCCA 1 cut(s) 1141
MroXI GAANNNNTTC 1 cut(s) 452
MscI TGGCCA 1 cut(s) 1141
MseI TTAA 8 cut(s) 335, 483, 882, 1023, 1118, 1265, 1440, 1482
Msp20I TGGCCA 1 cut(s) 1141
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 3 cut(s) 594, 1592, 1620
MspR9I CCNGG 3 cut(s) 266, 807, 1621
Mva1269I GAATGC 1 cut(s) 934
MvaI CCWGG 2 cut(s) 266, 807
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 84, 1494
NciI CCSGG 1 cut(s) 1621
NdeII GATC 9 cut(s) 176, 214, 230, 423, 460, 628, 657, 865, 1433
NlaIII CATG 5 cut(s) 48, 237, 687, 968, 1433
NlaIV GGNNCC 2 cut(s) 327, 630
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 4 cut(s) 53, 236, 611, 739
NspV TTCGAA 2 cut(s) 313, 1007
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 821
PctI GAATGC 1 cut(s) 934
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 7 cut(s) 310, 581, 588, 842, 1004, 1256, 1578
PflFI GACNNNGTC 1 cut(s) 730
PfoI TCCNGGA 2 cut(s) 264, 1619
PkrI GCNGC 4 cut(s) 145, 222, 1081, 1547
PleI GAGTC 3 cut(s) 148, 810, 1596
PpsI GAGTC 3 cut(s) 148, 810, 1596
Ppu21I YACGTR 1 cut(s) 1542
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 264, 805
PspGI CCWGG 2 cut(s) 264, 805
PspN4I GGNNCC 2 cut(s) 327, 630
PsuI RGATCY 4 cut(s) 460, 628, 657, 1433
PsyI GACNNNGTC 1 cut(s) 730
RsaI GTAC 1 cut(s) 1540
RsaNI GTAC 1 cut(s) 1539
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 8 cut(s) 335, 483, 882, 1023, 1118, 1265, 1440, 1482
SatI GCNGC 4 cut(s) 144, 221, 1080, 1546
Sau3AI GATC 9 cut(s) 176, 214, 230, 423, 460, 628, 657, 865, 1433
SchI GAGTC 3 cut(s) 148, 811, 1597
ScrFI CCNGG 3 cut(s) 266, 807, 1621
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 3 cut(s) 206, 527, 739
SfcI CTRYAG 2 cut(s) 951, 1330
SfuI TTCGAA 2 cut(s) 313, 1007
SmlI CTYRAG 2 cut(s) 899, 1559
SmoI CTYRAG 2 cut(s) 899, 1559
Sse9I AATT 7 cut(s) 544, 597, 911, 1009, 1049, 1212, 1639
SsiI CCGC 5 cut(s) 63, 78, 144, 221, 1235
SspMI CTAG 5 cut(s) 464, 633, 675, 1128, 1611
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 264, 805, 1619
StyI CCWWGG 1 cut(s) 674
TaaI ACNGT 5 cut(s) 53, 739, 817, 952, 1445
TaiI ACGT 4 cut(s) 12, 109, 243, 1544
TaqI TCGA 9 cut(s) 175, 279, 308, 313, 429, 878, 926, 1007, 1019
TaqII GACCGA 1 cut(s) 858
TasI AATT 7 cut(s) 544, 597, 911, 1009, 1049, 1212, 1639
TauI GCSGC 2 cut(s) 146, 223
TfiI GAWTC 7 cut(s) 310, 581, 588, 842, 1004, 1256, 1578
Tru1I TTAA 8 cut(s) 335, 483, 882, 1023, 1118, 1265, 1440, 1482
Tru9I TTAA 8 cut(s) 335, 483, 882, 1023, 1118, 1265, 1440, 1482
TscAI CASTG 2 cut(s) 1393, 1450
TseFI GTSAC 4 cut(s) 53, 236, 611, 739
TseI GCWGC 2 cut(s) 1079, 1545
Tsp45I GTSAC 4 cut(s) 53, 236, 611, 739
TspDTI ATGAA 7 cut(s) 420, 445, 461, 672, 924, 953, 1418
TspGWI ACGGA 5 cut(s) 155, 175, 196, 241, 758
TspRI CASTG 2 cut(s) 1393, 1450
Tth111I GACNNNGTC 1 cut(s) 730
XapI RAATTY 2 cut(s) 544, 1212
XbaI TCTAGA 1 cut(s) 463
XmaJI CCTAGG 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 734
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 5 cut(s) 464, 633, 675, 1128, 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.