Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010196

Physical Location & Seq

Genomic Coordinates Reverse (-)

15210929 .. 15211873

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGACCCTACACCGCCAAGCCCAAGCCCAGGCCCAACCCCACCGCCGCTCCACCTGTCACCGTCACCCCACCACACCCATCACCGGATTCTGCGCCCCTTGCCTCAGCGAACGCCTCGCCGGCCTCGACTCCTCCTCCCCATCCGCCGCCGTTGCTCCCCAGAACGCGCATTCCGGGTCTTCGGAGCTCCGGCGCAGCAAATCGTGCTGCGGGACCCGACCCGAGTCGTCGGCCTACCCGCCGGAGCCTCCTCGGCGCAAGTCGTGCGACGTCAGGAACCGGAACACTCTCTCGGAGCTCTTCAACATCGACGACCACCGCAAGGGCCTGCCCAGAAGTTTCGAGATCGATTCCAGCAGCCGAGGTTTCGAATTGAAAGAAGAGCCGGAGCCGCCGGAGGAGGAGGAGGAGGAGCACAATGGGGATGAAACTAGGGCTTCGGACGCGGAGTTCAAGACGATGAAGGAGCTGATAGATCTCGAGTTGCAGAGGAAGAAGGGCAACGGTCGAGATTTGAGGGAAATCGCAGGGACATTTTGGGAAACTGCCTCGAACAAAGTGAGGCAATGGCGCCGGAAGCAGAAGCCCAAGAAGCTCGAAAGCGAGGGTTTGGGGGCGGAGAAGCGAAGCGCGAGGCGGGGGTTGAGGGAGACCCAATCGGAGGTGGGAGAGTACGCATTGGGCCGGAGATCGTGCGATACGGATCTGGATCCGGGTCGGATGTCGTTGGATGAGCCTCGGGCTTCGTGGGACGGGTACATGAGCTCGAGAGCTTACCCGAGGATGACTCCGATGGTTTCGGTGGTGGAGGATGTCAAAATGAGTGAGGAGGAGGGTTTGGAGAGCTTGGAGAGGAGTCCCGGGGGTCGGCTCAGACTAAAGACTACTACTTTTCGCAGACGAGGCGGCGGCGGAGCTTTGAGAGGTCGAGTAGCAAAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

314

Amino Acids

35.26

Weight (kDa)

9.07

Isoelectric Point (pI)

87.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	10 - 55	3.1e-10	Protein of unknown function (DUF740)
DUF740	PF05340	54 - 121	2e-11	Protein of unknown function (DUF740)
DUF740	PF05340	133 - 275	1.9e-43	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46990 AT5G58930
fragaria_vesca	FvH4_3g38100
malus_domestica	MD03G1077100.v1.1 MD11G1081400.v1.1
prunus_persica	Prupe.6G061700_v2.0.a1
pyrus_communis	pycom03g06090 pycom05g14380 pycom15g27530
rosa_chinensis	RchiOBHm_Chr5g0068451
rosa_laevigata	RLG00000035976
rosa_multiflora	Rmu_sc0005087.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012330 Rroxscaffold_1G00012340 Rroxscaffold_1G00013070
rosa_rugosa	Rorug05G0390100
rosa_samantha	Rh5AG448700 Rh5BG466800 Rh5CG488400 Rh5DG480200
rosa_wichuraiana	Rw5G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	570
AccBSI	CCGCTC	1 cut(s)	48
AccII	CGCG	3 cut(s)	167, 446, 632
AclWI	GGATC	3 cut(s)	704, 711, 717
AcyI	GRCGYC	2 cut(s)	270, 571
AfaI	GTAC	2 cut(s)	674, 758
AfiI	CCNNNNNNNGG	5 cut(s)	28, 83, 322, 661, 867
AgsI	TTSAA	3 cut(s)	304, 376, 454
AjnI	CCWGG	1 cut(s)	27
AloI	GAACNNNNNNTCC	4 cut(s)	155, 187, 434, 466
AluBI	AGCT	8 cut(s)	187, 298, 469, 595, 765, 773, 846, 917
AluI	AGCT	8 cut(s)	187, 298, 469, 595, 765, 773, 846, 917
Alw21I	GWGCWC	4 cut(s)	189, 300, 417, 767
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	3 cut(s)	704, 711, 717
Ama87I	CYCGRG	6 cut(s)	221, 479, 738, 766, 778, 860
AoxI	GGCC	5 cut(s)	30, 121, 231, 325, 682
ApeKI	GCWGC	3 cut(s)	195, 207, 357
AspLEI	GCGC	6 cut(s)	95, 169, 195, 258, 573, 632
AspS9I	GGNCC	4 cut(s)	31, 213, 325, 682
AsuC2I	CCSGG	4 cut(s)	175, 714, 861, 862
AsuHPI	GGTGA	3 cut(s)	50, 56, 73
AsuII	TTCGAA	1 cut(s)	369
AvaI	CYCGRG	6 cut(s)	221, 479, 738, 766, 778, 860
AvaII	GGWCC	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	709
BanI	GGYRCC	1 cut(s)	570
BanII	GRGCYC	3 cut(s)	189, 300, 767
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	4 cut(s)	189, 300, 417, 767
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	194, 207, 369
BccI	CCATC	3 cut(s)	86, 148, 787
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	29
BcnI	CCSGG	4 cut(s)	175, 714, 861, 862
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	574
BglI	GCCNNNNNGGC	2 cut(s)	120, 253
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	8 cut(s)	46, 147, 196, 208, 358, 392, 907, 910
BlsI	GCNGC	8 cut(s)	47, 148, 197, 209, 359, 393, 908, 911
Bme1390I	CCNGG	5 cut(s)	29, 175, 714, 861, 862
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	6 cut(s)	221, 479, 738, 766, 778, 860
BmgT120I	GGNCC	4 cut(s)	31, 213, 325, 682
BmiI	GGNNCC	7 cut(s)	214, 215, 246, 278, 390, 572, 711
BmrFI	CCNGG	5 cut(s)	29, 175, 714, 861, 862
BoxI	GACNNNNGTC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
Bpu10I	CCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	369
BpuMI	CCSGG	4 cut(s)	175, 714, 861, 862
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	2 cut(s)	702, 708
BsaHI	GRCGYC	2 cut(s)	270, 571
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	7 cut(s)	27, 251, 361, 737, 779, 860, 861
BsaWI	WCCGGW	2 cut(s)	83, 279
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 119, 149
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 83, 322, 661, 867
Bse118I	RCCGGY	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	572
Bse8I	GATNNNNATC	2 cut(s)	702, 708
BseBI	CCWGG	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	7 cut(s)	27, 251, 361, 737, 779, 860, 861
BseGI	GGATG	6 cut(s)	140, 430, 726, 736, 789, 817
BseJI	GATNNNNATC	2 cut(s)	702, 708
BseLI	CCNNNNNNNGG	5 cut(s)	28, 83, 322, 661, 867
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	2 cut(s)	118, 886
BseXI	GCAGC	3 cut(s)	194, 207, 369
Bsh1236I	CGCG	3 cut(s)	167, 446, 632
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	5 cut(s)	32, 123, 233, 327, 684
BshNI	GGYRCC	1 cut(s)	570
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	508
BsiHKAI	GWGCWC	4 cut(s)	189, 300, 417, 767
BsiHKCI	CYCGRG	6 cut(s)	221, 479, 738, 766, 778, 860
BslFI	GGGAC	4 cut(s)	226, 544, 764, 843
BslI	CCNNNNNNNGG	5 cut(s)	28, 83, 322, 661, 867
BsmAI	GTCTC	1 cut(s)	644
BsmFI	GGGAC	4 cut(s)	226, 544, 764, 843
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	5 cut(s)	32, 123, 233, 327, 684
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	6 cut(s)	221, 479, 738, 766, 778, 860
Bsp119I	TTCGAA	1 cut(s)	369
Bsp1286I	GDGCHC	4 cut(s)	189, 300, 417, 767
Bsp143I	GATC	5 cut(s)	345, 475, 689, 703, 709
BspANI	GGCC	5 cut(s)	32, 123, 233, 327, 684
BspCNI	CTCAG	2 cut(s)	117, 885
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	3 cut(s)	167, 446, 632
BspLI	GGNNCC	7 cut(s)	214, 215, 246, 278, 390, 572, 711
BspPI	GGATC	3 cut(s)	704, 711, 717
BspQI	GCTCTTC	2 cut(s)	305, 375
BspT104I	TTCGAA	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	570
BspTNI	GGTCTC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	7 cut(s)	27, 251, 361, 737, 779, 860, 861
BssMI	GATC	5 cut(s)	345, 475, 689, 703, 709
BssNI	GRCGYC	2 cut(s)	270, 571
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	62, 506
Bst6I	CTCTTC	2 cut(s)	305, 375
BstACI	GRCGYC	2 cut(s)	270, 571
BstAPI	GCANNNNNTGC	2 cut(s)	204, 264
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	121, 329
BstDEI	CTNAG	2 cut(s)	104, 872
BstF5I	GGATG	6 cut(s)	140, 430, 726, 736, 789, 817
BstFNI	CGCG	3 cut(s)	167, 446, 632
BstH2I	RGCGCY	1 cut(s)	574
BstHHI	GCGC	6 cut(s)	95, 169, 195, 258, 573, 632
BstKTI	GATC	5 cut(s)	348, 478, 692, 706, 712
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	5 cut(s)	345, 475, 689, 703, 709
BstMCI	CGRYCG	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	29
BstPAI	GACNNNNGTC	1 cut(s)	223
BstSCI	CCNGG	5 cut(s)	27, 173, 712, 859, 860
BstUI	CGCG	3 cut(s)	167, 446, 632
BstV1I	GCAGC	3 cut(s)	194, 207, 369
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	3 cut(s)	475, 703, 709
BstYI	RGATCY	3 cut(s)	475, 703, 709
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	32, 123, 233, 327, 684
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	6 cut(s)	140, 430, 726, 736, 789, 817
Cac8I	GCNNGC	2 cut(s)	121, 329
CfoI	GCGC	6 cut(s)	95, 169, 195, 258, 573, 632
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	4 cut(s)	31, 213, 325, 682
Cfr9I	CCCGGG	1 cut(s)	860
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	673, 757
CviAII	CATG	1 cut(s)	760
CviQI	GTAC	2 cut(s)	673, 757
DdeI	CTNAG	2 cut(s)	104, 872
DinI	GGCGCC	1 cut(s)	572
DpnI	GATC	5 cut(s)	347, 477, 691, 705, 711
DpnII	GATC	5 cut(s)	345, 475, 689, 703, 709
Eam1104I	CTCTTC	2 cut(s)	305, 375
EarI	CTCTTC	2 cut(s)	305, 375
EciI	GGCGGA	3 cut(s)	133, 632, 927
Ecl136II	GAGCTC	3 cut(s)	187, 298, 765
Eco24I	GRGCYC	3 cut(s)	189, 300, 767
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	213
Eco53kI	GAGCTC	3 cut(s)	187, 298, 765
Eco88I	CYCGRG	6 cut(s)	221, 479, 738, 766, 778, 860
EcoICRI	GAGCTC	3 cut(s)	187, 298, 765
EcoO109I	RGGNCCY	2 cut(s)	213, 325
EcoRII	CCWGG	1 cut(s)	27
EcoT38I	GRGCYC	3 cut(s)	189, 300, 767
EgeI	GGCGCC	1 cut(s)	572
EheI	GGCGCC	1 cut(s)	572
FaeI	CATG	1 cut(s)	763
FaiI	YATR	1 cut(s)	761
FaqI	GGGAC	4 cut(s)	226, 544, 764, 843
FatI	CATG	1 cut(s)	759
FauI	CCCGC	3 cut(s)	203, 246, 630
Fnu4HI	GCNGC	8 cut(s)	46, 147, 196, 208, 358, 392, 907, 910
FokI	GGATG	6 cut(s)	127, 437, 733, 743, 796, 824
FriOI	GRGCYC	3 cut(s)	189, 300, 767
Fsp4HI	GCNGC	8 cut(s)	46, 147, 196, 208, 358, 392, 907, 910
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	6 cut(s)	94, 168, 194, 257, 572, 631
GluI	GCNGC	8 cut(s)	46, 147, 196, 208, 358, 392, 907, 910
HaeII	RGCGCY	1 cut(s)	574
HaeIII	GGCC	5 cut(s)	32, 123, 233, 327, 684
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	6 cut(s)	95, 169, 195, 258, 573, 632
Hin1I	GRCGYC	2 cut(s)	270, 571
Hin1II	CATG	1 cut(s)	763
Hin6I	GCGC	6 cut(s)	93, 167, 193, 256, 571, 630
HinP1I	GCGC	6 cut(s)	93, 167, 193, 256, 571, 630
HinfI	GANTC	6 cut(s)	87, 128, 224, 350, 787, 856
HphI	GGTGA	3 cut(s)	50, 56, 73
Hpy188I	TCNGA	7 cut(s)	184, 295, 442, 661, 720, 792, 875
Hpy188III	TCNNGA	7 cut(s)	274, 343, 454, 479, 509, 707, 768
Hpy99I	CGWCG	3 cut(s)	232, 272, 314
HpyAV	CCTTC	2 cut(s)	457, 490
HpyCH4III	ACNGT	2 cut(s)	62, 506
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	487
HpyF3I	CTNAG	2 cut(s)	104, 872
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	270, 571
Hsp92II	CATG	1 cut(s)	763
HspAI	GCGC	6 cut(s)	93, 167, 193, 256, 571, 630
KasI	GGCGCC	1 cut(s)	570
KflI	GGGWCCC	1 cut(s)	213
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	345, 475, 689, 703, 709
LguI	GCTCTTC	2 cut(s)	305, 375
Lsp1109I	GCAGC	3 cut(s)	194, 207, 369
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	56, 62
MalI	GATC	5 cut(s)	347, 477, 691, 705, 711
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	5 cut(s)	345, 475, 689, 703, 709
MboII	GAAGA	4 cut(s)	171, 292, 392, 505
MflI	RGATCY	3 cut(s)	475, 703, 709
MhlI	GDGCHC	4 cut(s)	189, 300, 417, 767
MluCI	AATT	1 cut(s)	371
Mly113I	GGCGCC	1 cut(s)	571
MlyI	GAGTC	4 cut(s)	122, 233, 781, 865
MmeI	TCCRAC	2 cut(s)	698, 708
MroNI	GCCGGC	1 cut(s)	119
MspR9I	CCNGG	5 cut(s)	29, 175, 714, 861, 862
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	3 cut(s)	167, 446, 632
NaeI	GCCGGC	1 cut(s)	121
NarI	GGCGCC	1 cut(s)	571
NciI	CCSGG	4 cut(s)	175, 714, 861, 862
NdeII	GATC	5 cut(s)	345, 475, 689, 703, 709
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	763
NlaIV	GGNNCC	7 cut(s)	214, 215, 246, 278, 390, 572, 711
NmeAIII	GCCGAG	2 cut(s)	232, 386
NmuCI	GTSAC	2 cut(s)	56, 62
NspV	TTCGAA	1 cut(s)	369
PaeR7I	CTCGAG	2 cut(s)	479, 766
PciSI	GCTCTTC	2 cut(s)	305, 375
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	169
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	87, 350
PkrI	GCNGC	8 cut(s)	47, 148, 197, 209, 359, 393, 908, 911
PleI	GAGTC	4 cut(s)	122, 232, 781, 864
PluTI	GGCGCC	1 cut(s)	574
PpsI	GAGTC	4 cut(s)	122, 232, 781, 864
PpuMI	RGGWCCY	1 cut(s)	213
PshAI	GACNNNNGTC	1 cut(s)	223
Psp124BI	GAGCTC	3 cut(s)	189, 300, 767
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	7 cut(s)	214, 215, 246, 278, 390, 572, 711
PspPI	GGNCC	4 cut(s)	31, 213, 325, 682
PspPPI	RGGWCCY	1 cut(s)	213
PsuI	RGATCY	3 cut(s)	475, 703, 709
RsaI	GTAC	2 cut(s)	674, 758
RsaNI	GTAC	2 cut(s)	673, 757
SacI	GAGCTC	3 cut(s)	189, 300, 767
SapI	GCTCTTC	2 cut(s)	305, 375
SatI	GCNGC	8 cut(s)	46, 147, 196, 208, 358, 392, 907, 910
Sau3AI	GATC	5 cut(s)	345, 475, 689, 703, 709
Sau96I	GGNCC	4 cut(s)	31, 213, 325, 682
SchI	GAGTC	4 cut(s)	122, 233, 781, 865
ScrFI	CCNGG	5 cut(s)	29, 175, 714, 861, 862
SduI	GDGCHC	4 cut(s)	189, 300, 417, 767
SfoI	GGCGCC	1 cut(s)	572
Sfr274I	CTCGAG	2 cut(s)	479, 766
SfuI	TTCGAA	1 cut(s)	369
SinI	GGWCC	1 cut(s)	213
SlaI	CTCGAG	2 cut(s)	479, 766
SmaI	CCCGGG	1 cut(s)	862
SmlI	CTYRAG	2 cut(s)	479, 766
SmoI	CTYRAG	2 cut(s)	479, 766
Sse9I	AATT	1 cut(s)	371
SspDI	GGCGCC	1 cut(s)	570
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	3 cut(s)	189, 300, 767
StyD4I	CCNGG	5 cut(s)	27, 173, 712, 859, 860
TaaI	ACNGT	2 cut(s)	62, 506
TaiI	ACGT	1 cut(s)	273
TasI	AATT	1 cut(s)	371
TauI	GCSGC	5 cut(s)	48, 149, 394, 909, 912
TfiI	GAWTC	2 cut(s)	87, 350
TseFI	GTSAC	2 cut(s)	56, 62
TseI	GCWGC	3 cut(s)	195, 207, 357
Tsp45I	GTSAC	2 cut(s)	56, 62
TspDTI	ATGAA	2 cut(s)	441, 476
TspGWI	ACGGA	1 cut(s)	716
TspMI	CCCGGG	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	213
XhoI	CTCGAG	2 cut(s)	479, 766
XmaI	CCCGGG	1 cut(s)	860
XspI	CTAG	1 cut(s)	432
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.