Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015922

Physical Location & Seq

Genomic Coordinates Reverse (-)

17574785 .. 17575880

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCAACAAAGCTTCACATTTCAACTTCTTCCTGTTGACTTTTTCTCTCCCAAAATCACAGATTCATCTTCTTCAAATTTCCTTCGATCAAAAAACCATTACCCTTCAATGGAATCAATCAACACCTTGAAAGGCTACGACAAAGTATCCGACCAAGAAAACCAAATCCATCATCATCATCATTCTCCACTTCCAAAACCATCATCATTTTCCCGTAAAACCCTAATCGCCACCGGCTCCGTCGTATCTCTCCTCTTAATCCTCTCCGTCGTCGCTTTAACCGCCGGAGCTTTCACTCACTCTCCTCCACACCATCCACCTATCTCCTCCGCCTCTCTCAAGTCACTATGCTCCGTGACTCGTTACCCAGAGACCTGTTTCAACTCTCTATCATCTTCTCTCAACGAATCTGATTCAAAGCTTAACCCTGAATCAATCCTCGAGCTTTCTCTTCGAGTCGCTGCTAAAGAGATCTCAAACCTCTCTATCTCTTTCCGATCAATCAACGATATGCCTGAGGACGCGGCGGTTGGTGATTGTGTGAAGCTTTACACCGACGCGTTGAGTCAACTCAACGATTCGATTACAGAGATCGAGAGAAAGAAGAAGAAAGGTGGGAATAATTGGTTGACGGAAGAAGTCGTCGGAGATGTTAAGACTTGGATCAGCGCCGCCATGACTGACGGTGAGACTTGTTCCGATGGAATTGAAGAAATGGGAACAATTGTGGGTAATGAGATCAAGAAAAAGATGGAGATGGCTAATCAGATGATGAGTATTAGTTTGGCCATTGTTAGTCAAATGAAGAAGCTTTTGTTGATATTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030234 GO:0030599 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0051722 GO:0051723 GO:0052689 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

276

Amino Acids

30.39

Weight (kDa)

6.2

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	112 - 264	1.8e-32	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47670
fragaria_vesca	FvH4_5g15211
malus_domestica	MD06G1191000.v1.1
prunus_persica	Prupe.5G189700_v2.0.a1
pyrus_communis	pycom06g16930
rosa_chinensis	RchiOBHm_Chr7g0180951
rosa_laevigata	RLG00000005222
rosa_multiflora	Rmu_co8153612.1_g000001 Rmu_sc0028417.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272390
rosa_rugosa	Rorug06G0437900
rosa_samantha	Rh7AG039300 Rh7BG038600 Rh7CG040300
rosa_wichuraiana	Rw7G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	524, 560
AciI	CCGC	5 cut(s)	282, 330, 524, 527, 672
AclWI	GGATC	1 cut(s)	671
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	7 cut(s)	23, 75, 108, 130, 382, 417, 710
AluBI	AGCT	6 cut(s)	12, 290, 421, 445, 547, 811
AluI	AGCT	6 cut(s)	12, 290, 421, 445, 547, 811
Alw26I	GTCTC	2 cut(s)	365, 683
AlwI	GGATC	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	671
AsuHPI	GGTGA	2 cut(s)	545, 698
AvaI	CYCGRG	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	788
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	6 cut(s)	177, 208, 321, 695, 745, 751
BciVI	GTATCC	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	365, 683
BfoI	RGCGCY	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	471
BisI	GCNGC	3 cut(s)	462, 525, 672
BlsI	GCNGC	3 cut(s)	463, 526, 673
BmeT110I	CYCGRG	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	516
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	3 cut(s)	242, 294, 316
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	2 cut(s)	524, 560
BshFI	GGCC	1 cut(s)	788
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	234, 285
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	365, 683
BsnI	GGCC	1 cut(s)	788
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	440
Bsp143I	GATC	6 cut(s)	86, 471, 497, 591, 663, 738
BspACI	CCGC	5 cut(s)	282, 330, 524, 527, 672
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	1 cut(s)	508
BspFNI	CGCG	2 cut(s)	524, 560
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	6 cut(s)	86, 471, 497, 591, 663, 738
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	516
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	2 cut(s)	524, 560
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	6 cut(s)	89, 474, 500, 594, 666, 741
BstMAI	GTCTC	2 cut(s)	365, 683
BstMBI	GATC	6 cut(s)	86, 471, 497, 591, 663, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstUI	CGCG	2 cut(s)	524, 560
BstV1I	GCAGC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	516
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	788
BtsCI	GGATG	1 cut(s)	313
CfoI	GCGC	1 cut(s)	671
Cfr10I	RCCGGY	1 cut(s)	233
CseI	GACGC	2 cut(s)	530, 566
CviAII	CATG	1 cut(s)	676
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	6 cut(s)	88, 473, 499, 593, 665, 740
DpnII	GATC	6 cut(s)	86, 471, 497, 591, 663, 738
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	365
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	440
FaeI	CATG	1 cut(s)	679
FaiI	YATR	3 cut(s)	349, 512, 677
FatI	CATG	1 cut(s)	675
Fnu4HI	GCNGC	3 cut(s)	462, 525, 672
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	462, 525, 672
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	3 cut(s)	462, 525, 672
HaeII	RGCGCY	1 cut(s)	672
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	2 cut(s)	234, 285
HgaI	GACGC	2 cut(s)	530, 566
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	1 cut(s)	679
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	3 cut(s)	37, 569, 630
HindII	GTYRAC	3 cut(s)	37, 569, 630
HindIII	AAGCTT	4 cut(s)	10, 419, 545, 809
HinfI	GANTC	9 cut(s)	62, 113, 358, 407, 413, 431, 456, 565, 578
HpaII	CCGG	2 cut(s)	234, 285
HphI	GGTGA	2 cut(s)	545, 698
Hpy166II	GTNNAC	3 cut(s)	37, 569, 630
Hpy188I	TCNGA	6 cut(s)	151, 412, 497, 647, 700, 768
Hpy188III	TCNNGA	2 cut(s)	595, 742
Hpy8I	GTNNAC	3 cut(s)	37, 569, 630
Hpy99I	CGWCG	5 cut(s)	245, 272, 275, 560, 647
HpyAV	CCTTC	2 cut(s)	92, 114
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	516
Hsp92II	CATG	1 cut(s)	679
HspAI	GCGC	1 cut(s)	669
Kzo9I	GATC	6 cut(s)	86, 471, 497, 591, 663, 738
LmnI	GCTCC	3 cut(s)	242, 287, 356
LpnPI	CCDG	7 cut(s)	45, 247, 298, 381, 388, 441, 528
Lsp1109I	GCAGC	1 cut(s)	448
MaeIII	GTNAC	3 cut(s)	342, 355, 362
MalI	GATC	6 cut(s)	88, 473, 499, 593, 665, 740
MboI	GATC	6 cut(s)	86, 471, 497, 591, 663, 738
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	1 cut(s)	471
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	4 cut(s)	76, 622, 705, 723
MluI	ACGCGT	1 cut(s)	558
MluNI	TGGCCA	1 cut(s)	788
MlyI	GAGTC	3 cut(s)	352, 465, 574
MmeI	TCCRAC	2 cut(s)	174, 625
MnlI	CCTC	8 cut(s)	263, 272, 315, 337, 343, 449, 491, 511
Mox20I	TGGCCA	1 cut(s)	788
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	4 cut(s)	257, 278, 423, 654
Msp20I	TGGCCA	1 cut(s)	788
MspI	CCGG	2 cut(s)	234, 285
MunI	CAATTG	1 cut(s)	723
MvnI	CGCG	2 cut(s)	524, 560
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	6 cut(s)	86, 471, 497, 591, 663, 738
NlaIII	CATG	1 cut(s)	679
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	342, 355
PaeR7I	CTCGAG	1 cut(s)	440
PfeI	GAWTC	6 cut(s)	62, 113, 407, 413, 431, 578
PkrI	GCNGC	3 cut(s)	463, 526, 673
PleI	GAGTC	3 cut(s)	352, 464, 573
PpsI	GAGTC	3 cut(s)	352, 464, 573
PspN4I	GGNNCC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	257, 278, 423, 654
SatI	GCNGC	3 cut(s)	462, 525, 672
Sau3AI	GATC	6 cut(s)	86, 471, 497, 591, 663, 738
SchI	GAGTC	3 cut(s)	352, 465, 574
Sfr274I	CTCGAG	1 cut(s)	440
SlaI	CTCGAG	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	338, 440
SmoI	CTYRAG	2 cut(s)	338, 440
Sse9I	AATT	4 cut(s)	76, 622, 705, 723
SsiI	CCGC	5 cut(s)	282, 330, 524, 527, 672
TaaI	ACNGT	1 cut(s)	686
TaqI	TCGA	5 cut(s)	85, 441, 454, 581, 594
TasI	AATT	4 cut(s)	76, 622, 705, 723
TauI	GCSGC	2 cut(s)	527, 674
TfiI	GAWTC	6 cut(s)	62, 113, 407, 413, 431, 578
Tru1I	TTAA	4 cut(s)	257, 278, 423, 654
Tru9I	TTAA	4 cut(s)	257, 278, 423, 654
TseFI	GTSAC	2 cut(s)	342, 355
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	2 cut(s)	342, 355
TspDTI	ATGAA	2 cut(s)	54, 818
TspGWI	ACGGA	4 cut(s)	229, 256, 343, 647
XapI	RAATTY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.