Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015922

Physical Location & Seq

Genomic Coordinates Reverse (-)

32724968 .. 32725681

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1191000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAATCCATCAACCACCTCAAAGGCTATGGCAAAGTCAACCCAGAAACCCTTGAAAACCCAGAACCCCCTAAACCCCAAAAGCGCATCTCCTCCGCCGTCGCCATCTCCGCCGTCATCTGCCTGACTCTAGTGATCACCCTCGCGATCGCCGCCCTCATCCACGAGTCCACCACCGAGTCACCCGACGAGTCCCAACCCCAATCCCTCTCCAACTCGGCCGAGTCAACCATCAAAACCGTCTGCAACGTGACGCGCTACCCCGACTCGTGCTTCAGATCCATATCCGCCCTCAACCACTCTCCAAACCCCGACCCAGAAGCCATTTTCAAGCTCTCCCTTGAAATCTCCGCTGCCGAGCTCTCCCGCCTCTTGGCGTTGTTCAAGACCGTGAACTCCGATCCGGCGACTCAGGACTGCGTTTCTCAGCTGGAGGAAGCGATAAGCCGGGTCAACGACTCGGCGTCGGCGATGAGGGTGGACCCGGGAGAGAAGGCGTTGACTGGAGACAAATTGAAGGACATACAGACGTGGATAAGCAGCGCCGTGACGGATCAGGAGACGTGCTTGGATGGGTTGGAGGAGATGGGATCGACTGCTGTGGAGGCGGTGAAGAGCGAGATGAACAAGTCAAAGGAGTACAGCAGCAACAGTTTGGCAATTGTGGCCAACTTCAAGGGCATTCTTGACAAGTTCAATATTCCCCTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030234 GO:0030599 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0051722 GO:0051723 GO:0052689 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

238

Amino Acids

25.56

Weight (kDa)

4.86

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	77 - 221	1.9e-30	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47670
fragaria_vesca	FvH4_5g15211
malus_domestica	MD06G1191000.v1.1
prunus_persica	Prupe.5G189700_v2.0.a1
pyrus_communis	pycom06g16930
rosa_chinensis	RchiOBHm_Chr7g0180951
rosa_laevigata	RLG00000005222
rosa_multiflora	Rmu_co8153612.1_g000001 Rmu_sc0028417.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272390
rosa_rugosa	Rorug06G0437900
rosa_samantha	Rh7AG039300 Rh7BG038600 Rh7CG040300
rosa_wichuraiana	Rw7G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	146, 256
AciI	CCGC	7 cut(s)	96, 111, 153, 288, 351, 367, 608
AclWI	GGATC	4 cut(s)	273, 395, 561, 598
AcoI	YGGCCR	2 cut(s)	219, 666
AcuI	CTGAAG	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	1 cut(s)	641
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	7 cut(s)	56, 331, 344, 385, 517, 676, 697
AhdI	GACNNNNNGTC	1 cut(s)	463
AjiI	CACGTC	2 cut(s)	531, 564
AluBI	AGCT	3 cut(s)	334, 361, 430
AluI	AGCT	3 cut(s)	334, 361, 430
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	501, 554
AlwI	GGATC	4 cut(s)	273, 395, 561, 598
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	2 cut(s)	219, 666
ApeKI	GCWGC	3 cut(s)	353, 540, 645
AsiSI	GCGATCGC	1 cut(s)	150
AspLEI	GCGC	3 cut(s)	87, 258, 545
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	3 cut(s)	449, 485, 486
AsuHPI	GGTGA	3 cut(s)	130, 174, 622
AvaI	CYCGRG	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	363
BauI	CACGAG	2 cut(s)	164, 268
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	340, 552, 657
BccI	CCATC	5 cut(s)	17, 113, 239, 566, 580
BceAI	ACGGC	3 cut(s)	83, 98, 530
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	3 cut(s)	449, 485, 486
BcoDI	GTCTC	2 cut(s)	501, 554
BfaI	CTAG	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	546
BisI	GCNGC	4 cut(s)	153, 354, 541, 646
BlsI	GCNGC	4 cut(s)	154, 355, 542, 647
Bme1390I	CCNGG	3 cut(s)	449, 485, 486
Bme18I	GGWCC	1 cut(s)	481
BmeRI	GACNNNNNGTC	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	484
BmgBI	CACGTC	2 cut(s)	531, 564
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	3 cut(s)	449, 485, 486
BmsI	GCATC	1 cut(s)	96
BpmI	CTGGAG	2 cut(s)	452, 525
BpuMI	CCSGG	3 cut(s)	449, 485, 486
BsaBI	GATNNNNATC	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	159, 577
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	425, 440
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	2 cut(s)	82, 596
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	340, 552, 657
Bsh1236I	CGCG	2 cut(s)	146, 256
Bsh1285I	CGRYCG	2 cut(s)	150, 222
BshFI	GGCC	2 cut(s)	221, 668
BsiEI	CGRYCG	2 cut(s)	150, 222
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	3 cut(s)	404, 448, 485
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	2 cut(s)	501, 554
BsmBI	CGTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	221, 668
BsoBI	CYCGRG	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	6 cut(s)	135, 147, 278, 400, 553, 590
Bsp68I	TCGCGA	1 cut(s)	146
BspACI	CCGC	7 cut(s)	96, 111, 153, 288, 351, 367, 608
BspANI	GGCC	2 cut(s)	221, 668
BspCNI	CTCAG	2 cut(s)	424, 439
BspFNI	CGCG	2 cut(s)	146, 256
BspLI	GGNNCC	1 cut(s)	483
BspPI	GGATC	4 cut(s)	273, 395, 561, 598
BspQI	GCTCTTC	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	6 cut(s)	135, 147, 278, 400, 553, 590
BssNI	GRCGYC	1 cut(s)	464
BssSI	CACGAG	2 cut(s)	164, 268
Bst2BI	CACGAG	2 cut(s)	164, 268
Bst4CI	ACNGT	3 cut(s)	241, 391, 653
Bst6I	CTCTTC	1 cut(s)	608
BstACI	GRCGYC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	411, 426
BstF5I	GGATG	2 cut(s)	159, 577
BstFNI	CGCG	2 cut(s)	146, 256
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	3 cut(s)	87, 258, 545
BstKTI	GATC	6 cut(s)	138, 150, 281, 403, 556, 593
BstMAI	GTCTC	2 cut(s)	501, 554
BstMBI	GATC	6 cut(s)	135, 147, 278, 400, 553, 590
BstMCI	CGRYCG	2 cut(s)	150, 222
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 152, 605, 665
BstSCI	CCNGG	3 cut(s)	447, 483, 484
BstUI	CGCG	2 cut(s)	146, 256
BstV1I	GCAGC	3 cut(s)	340, 552, 657
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	221, 668
BtgZI	GCGATG	1 cut(s)	485
BtrI	CACGTC	2 cut(s)	531, 564
BtsCI	GGATG	2 cut(s)	159, 577
BtuMI	TCGCGA	1 cut(s)	146
CfoI	GCGC	3 cut(s)	87, 258, 545
Cfr13I	GGNCC	1 cut(s)	481
Cfr9I	CCCGGG	1 cut(s)	484
CseI	GACGC	2 cut(s)	262, 453
Csp6I	GTAC	1 cut(s)	640
CviJI	RGCY	8 cut(s)	27, 221, 323, 334, 361, 430, 447, 668
CviKI_1	RGCY	8 cut(s)	27, 221, 323, 334, 361, 430, 447, 668
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	2 cut(s)	411, 426
DpnI	GATC	6 cut(s)	137, 149, 280, 402, 555, 592
DpnII	GATC	6 cut(s)	135, 147, 278, 400, 553, 590
DriI	GACNNNNNGTC	1 cut(s)	463
EaeI	YGGCCR	2 cut(s)	219, 666
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	608
Eam1105I	GACNNNNNGTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	608
EciI	GGCGGA	3 cut(s)	85, 100, 277
Ecl136II	GAGCTC	1 cut(s)	361
EclXI	CGGCCG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	481
Eco52I	CGGCCG	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	484
EcoICRI	GAGCTC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	554
FaiI	YATR	3 cut(s)	30, 284, 524
FaqI	GGGAC	1 cut(s)	178
FauI	CCCGC	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	153, 354, 541, 646
FokI	GGATG	2 cut(s)	146, 584
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	4 cut(s)	153, 354, 541, 646
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	3 cut(s)	86, 257, 544
GluI	GCNGC	4 cut(s)	153, 354, 541, 646
GsuI	CTGGAG	2 cut(s)	452, 525
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	221, 668
HapII	CCGG	3 cut(s)	404, 448, 485
HgaI	GACGC	2 cut(s)	262, 453
HhaI	GCGC	3 cut(s)	87, 258, 545
Hin1I	GRCGYC	1 cut(s)	464
Hin6I	GCGC	3 cut(s)	85, 256, 543
HinP1I	GCGC	3 cut(s)	85, 256, 543
HincII	GTYRAC	4 cut(s)	40, 228, 454, 501
HindII	GTYRAC	4 cut(s)	40, 228, 454, 501
HinfI	GANTC	9 cut(s)	5, 127, 167, 179, 191, 224, 266, 409, 458
HpaII	CCGG	3 cut(s)	404, 448, 485
HphI	GGTGA	3 cut(s)	130, 174, 622
Hpy166II	GTNNAC	7 cut(s)	40, 171, 228, 394, 454, 481, 501
Hpy188I	TCNGA	2 cut(s)	278, 400
Hpy188III	TCNNGA	5 cut(s)	145, 385, 413, 557, 686
Hpy8I	GTNNAC	7 cut(s)	40, 171, 228, 394, 454, 481, 501
Hpy99I	CGWCG	3 cut(s)	104, 191, 469
HpyAV	CCTTC	2 cut(s)	487, 511
HpyCH4III	ACNGT	3 cut(s)	241, 391, 653
HpyCH4IV	ACGT	3 cut(s)	249, 530, 563
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 152, 605, 665
HpyF3I	CTNAG	2 cut(s)	411, 426
HpySE526I	ACGT	3 cut(s)	249, 530, 563
Hsp92I	GRCGYC	1 cut(s)	464
HspAI	GCGC	3 cut(s)	85, 256, 543
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	6 cut(s)	135, 147, 278, 400, 553, 590
LguI	GCTCTTC	1 cut(s)	608
Lsp1109I	GCAGC	3 cut(s)	340, 552, 657
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	3 cut(s)	249, 530, 563
MaeIII	GTNAC	3 cut(s)	180, 250, 547
MalI	GATC	6 cut(s)	137, 149, 280, 402, 555, 592
MboI	GATC	6 cut(s)	135, 147, 278, 400, 553, 590
MboII	GAAGA	1 cut(s)	625
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	2 cut(s)	512, 660
MluNI	TGGCCA	1 cut(s)	668
MlyI	GAGTC	8 cut(s)	121, 176, 188, 200, 233, 260, 403, 452
MmeI	TCCRAC	2 cut(s)	237, 558
Mox20I	TGGCCA	1 cut(s)	668
MscI	TGGCCA	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	668
MspA1I	CMGCKG	2 cut(s)	353, 430
MspI	CCGG	3 cut(s)	404, 448, 485
MspR9I	CCNGG	3 cut(s)	449, 485, 486
MunI	CAATTG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	681
MvnI	CGCG	2 cut(s)	146, 256
MwoI	GCNNNNNNNGC	4 cut(s)	110, 152, 605, 665
NciI	CCSGG	3 cut(s)	449, 485, 486
NdeII	GATC	6 cut(s)	135, 147, 278, 400, 553, 590
NlaIV	GGNNCC	1 cut(s)	483
NmeAIII	GCCGAG	4 cut(s)	197, 247, 382, 440
NmuCI	GTSAC	3 cut(s)	180, 250, 547
NruI	TCGCGA	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	154, 355, 542, 647
Ple19I	CGATCG	1 cut(s)	150
PleI	GAGTC	8 cut(s)	121, 175, 187, 199, 232, 260, 403, 452
PpsI	GAGTC	8 cut(s)	121, 175, 187, 199, 232, 260, 403, 452
Psp124BI	GAGCTC	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	430
RgaI	GCGATCGC	1 cut(s)	150
RruI	TCGCGA	1 cut(s)	146
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	608
SatI	GCNGC	4 cut(s)	153, 354, 541, 646
Sau3AI	GATC	6 cut(s)	135, 147, 278, 400, 553, 590
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	8 cut(s)	121, 176, 188, 200, 233, 260, 403, 452
ScrFI	CCNGG	3 cut(s)	449, 485, 486
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	7 cut(s)	21, 252, 336, 363, 432, 533, 566
SfaAI	GCGATCGC	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	96
SgfI	GCGATCGC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	481
SmaI	CCCGGG	1 cut(s)	486
Sse9I	AATT	2 cut(s)	512, 660
SsiI	CCGC	7 cut(s)	96, 111, 153, 288, 351, 367, 608
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	131
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	447, 483, 484
TaaI	ACNGT	3 cut(s)	241, 391, 653
TaiI	ACGT	3 cut(s)	252, 533, 566
TaqI	TCGA	1 cut(s)	593
TasI	AATT	2 cut(s)	512, 660
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	3 cut(s)	180, 250, 547
TseI	GCWGC	3 cut(s)	353, 540, 645
Tsp45I	GTSAC	3 cut(s)	180, 250, 547
TspDTI	ATGAA	1 cut(s)	638
TspGWI	ACGGA	1 cut(s)	566
TspMI	CCCGGG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	481
XmaI	CCCGGG	1 cut(s)	484
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.