Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015922

Physical Location & Seq

Genomic Coordinates Forward (+)

64495748 .. 64496464

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATTCCATCAACGTCCTCAAAGGCTACGGCAAGGTAAACCCAGAACACCACCTAGAAGTCCAAGCTCAGAAGATCCCCCACACACCCAAAAGGCCAATCATCACCACTCTTGTCATCTCAGCAATAGTCGGCTTGACCTTTGTGATCGGCCTCATGCTCGCAGCTCTCATCCATGAATCCACTACCGAGCCAATCGACGAGTCCCCATCCCTCTCCAGCTCTGCCGAGTCAACCATCAAAATCGTCTGCAACGTGACTCGGTACCCTGAGTCTTGGTTCTCCTCCATTTCCTCCCTCAACAGCTCTCCTAAACCAGACCCAGAGTCCATCCTCAAGCTCTCTCTCCAAGTCTCCATTTCCGAGCTTTCCCATCTCTCTTCGGTGTTGAAGACCATGAACTCCGATGATGCCGCCATCCGTGACTGCCGGGACCAGGTGGAGGACGCGTTGAGTCAGCTCAATGACTCGGTGTCGGCAATGGTGGTGGACAAAGGGCTGACTGAAGCAAAGGTCAAGGACGTCCAGACGTGGATAAGTAGTGCGGTGACGGACCAAGAGACGTGCTTGGATGGTTTGCAAGAGATGGGATCAGCGAGTGTTGATGATGTGAAGAAGAAGATGAAGAAGTCGATGGACTTCACCAGCAACAGCTTAGCCATTGTGGCTAATTTCAAGGCCATTCTTGACAAGTTTAGCCACATTCCACTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030234 GO:0030599 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0051722 GO:0051723 GO:0052689 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

238

Amino Acids

25.88

Weight (kDa)

5.34

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	79 - 221	5.9e-31	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47670
fragaria_vesca	FvH4_5g15211
malus_domestica	MD06G1191000.v1.1
prunus_persica	Prupe.5G189700_v2.0.a1
pyrus_communis	pycom06g16930
rosa_chinensis	RchiOBHm_Chr7g0180951
rosa_laevigata	RLG00000005222
rosa_multiflora	Rmu_co8153612.1_g000001 Rmu_sc0028417.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272390
rosa_rugosa	Rorug06G0437900
rosa_samantha	Rh7AG039300 Rh7BG038600 Rh7CG040300
rosa_wichuraiana	Rw7G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	525
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	264
AccII	CGCG	1 cut(s)	449
AciI	CCGC	2 cut(s)	414, 545
AclWI	GGATC	2 cut(s)	70, 598
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	436, 442
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	2 cut(s)	391, 676
AhdI	GACNNNNNGTC	2 cut(s)	325, 472
AjiI	CACGTC	2 cut(s)	531, 564
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	8 cut(s)	68, 167, 222, 306, 340, 367, 460, 654
AluI	AGCT	8 cut(s)	68, 167, 222, 306, 340, 367, 460, 654
Alw26I	GTCTC	2 cut(s)	358, 554
AlwI	GGATC	2 cut(s)	70, 598
AoxI	GGCC	3 cut(s)	95, 151, 678
ApeKI	GCWGC	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	433, 553
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	97, 559, 634
AvaII	GGWCC	2 cut(s)	433, 553
BanI	GGYRCC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	9 cut(s)	17, 217, 245, 338, 381, 425, 566, 580, 628
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	437
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	358, 554
BfaI	CTAG	1 cut(s)	56
BglI	GCCNNNNNGGC	1 cut(s)	665
BisI	GCNGC	2 cut(s)	165, 414
BlpI	GCTNAGC	1 cut(s)	655
BlsI	GCNGC	2 cut(s)	166, 415
Bme1390I	CCNGG	2 cut(s)	431, 437
Bme18I	GGWCC	2 cut(s)	433, 553
BmeRI	GACNNNNNGTC	2 cut(s)	325, 472
BmgBI	CACGTC	2 cut(s)	531, 564
BmgT120I	GGNCC	2 cut(s)	433, 553
BmiI	GGNNCC	2 cut(s)	266, 434
BmrFI	CCNGG	2 cut(s)	431, 437
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	655
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 442
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	437
BseGI	GGATG	5 cut(s)	171, 209, 330, 417, 577
BseLI	CCNNNNNNNGG	2 cut(s)	436, 442
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	83, 135, 261
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	97, 153, 680
BshNI	GGYRCC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	2 cut(s)	190, 446
BslI	CCNNNNNNNGG	2 cut(s)	436, 442
BsmAI	GTCTC	2 cut(s)	358, 554
BsmBI	CGTCTC	1 cut(s)	554
BsmFI	GGGAC	2 cut(s)	190, 446
BsnI	GGCC	3 cut(s)	97, 153, 680
Bsp143I	GATC	3 cut(s)	75, 147, 590
Bsp1720I	GCTNAGC	1 cut(s)	655
BspACI	CCGC	2 cut(s)	414, 545
BspANI	GGCC	3 cut(s)	97, 153, 680
BspCNI	CTCAG	3 cut(s)	82, 134, 262
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	266, 434
BspPI	GGATC	2 cut(s)	70, 598
BspT107I	GGYRCC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	486
BssMI	GATC	3 cut(s)	75, 147, 590
BssNI	GRCGYC	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	437
Bst6I	CTCTTC	1 cut(s)	385
BstACI	GRCGYC	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	4 cut(s)	69, 121, 270, 655
BstF5I	GGATG	5 cut(s)	171, 209, 330, 417, 577
BstFNI	CGCG	1 cut(s)	449
BstKTI	GATC	3 cut(s)	78, 150, 593
BstMAI	GTCTC	2 cut(s)	358, 554
BstMBI	GATC	3 cut(s)	75, 147, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	429, 435
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	97, 153, 680
BtrI	CACGTC	2 cut(s)	531, 564
BtsCI	GGATG	5 cut(s)	171, 209, 330, 417, 577
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	433, 553
CseI	GACGC	1 cut(s)	455
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	3 cut(s)	157, 176, 397
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	4 cut(s)	69, 121, 270, 655
DpnI	GATC	3 cut(s)	77, 149, 592
DpnII	GATC	3 cut(s)	75, 147, 590
DriI	GACNNNNNGTC	2 cut(s)	325, 472
Eam1104I	CTCTTC	1 cut(s)	385
Eam1105I	GACNNNNNGTC	2 cut(s)	325, 472
EarI	CTCTTC	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	433, 553
Eco57I	CTGAAG	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	554
FaeI	CATG	3 cut(s)	160, 179, 400
FaiI	YATR	3 cut(s)	158, 177, 398
FaqI	GGGAC	2 cut(s)	190, 446
FatI	CATG	3 cut(s)	156, 175, 396
Fnu4HI	GCNGC	2 cut(s)	165, 414
FokI	GGATG	5 cut(s)	158, 196, 317, 404, 584
Fsp4HI	GCNGC	2 cut(s)	165, 414
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	165, 414
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	3 cut(s)	97, 153, 680
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	3 cut(s)	160, 179, 400
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	9 cut(s)	5, 179, 203, 230, 259, 272, 326, 454, 467
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	3 cut(s)	97, 559, 634
Hpy166II	GTNNAC	3 cut(s)	40, 234, 490
Hpy188I	TCNGA	3 cut(s)	72, 364, 406
Hpy188III	TCNNGA	2 cut(s)	526, 686
Hpy8I	GTNNAC	3 cut(s)	40, 234, 490
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4IV	ACGT	5 cut(s)	15, 255, 522, 530, 563
HpyCH4V	TGCA	2 cut(s)	252, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	4 cut(s)	69, 121, 270, 655
HpySE526I	ACGT	5 cut(s)	15, 255, 522, 530, 563
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	3 cut(s)	160, 179, 400
KpnI	GGTACC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	75, 147, 590
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	400
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	5 cut(s)	15, 255, 522, 530, 563
MaeIII	GTNAC	3 cut(s)	256, 422, 547
MalI	GATC	3 cut(s)	77, 149, 592
MboI	GATC	3 cut(s)	75, 147, 590
MboII	GAAGA	7 cut(s)	85, 372, 403, 625, 628, 631, 637
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	1 cut(s)	670
MluI	ACGCGT	1 cut(s)	447
MlyI	GAGTC	7 cut(s)	212, 239, 253, 281, 335, 461, 463
MnlI	CCTC	8 cut(s)	29, 164, 224, 295, 304, 308, 344, 436
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	431, 437
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	665
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	3 cut(s)	75, 147, 590
NlaIII	CATG	3 cut(s)	160, 179, 400
NlaIV	GGNNCC	2 cut(s)	266, 434
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	3 cut(s)	256, 422, 547
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	5, 179
PkrI	GCNGC	2 cut(s)	166, 415
PleI	GAGTC	7 cut(s)	211, 238, 253, 280, 334, 461, 462
PpsI	GAGTC	7 cut(s)	211, 238, 253, 280, 334, 461, 462
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	266, 434
PspPI	GGNCC	2 cut(s)	433, 553
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SatI	GCNGC	2 cut(s)	165, 414
Sau3AI	GATC	3 cut(s)	75, 147, 590
Sau96I	GGNCC	2 cut(s)	433, 553
SchI	GAGTC	7 cut(s)	212, 239, 253, 281, 335, 461, 463
ScrFI	CCNGG	2 cut(s)	431, 437
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	2 cut(s)	433, 553
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	670
SsiI	CCGC	2 cut(s)	414, 545
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	429, 435
TaiI	ACGT	5 cut(s)	18, 258, 525, 533, 566
TaqI	TCGA	2 cut(s)	198, 632
TasI	AATT	1 cut(s)	670
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	5, 179
TseFI	GTSAC	3 cut(s)	256, 422, 547
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	3 cut(s)	256, 422, 547
TspDTI	ATGAA	3 cut(s)	192, 413, 638
TspGWI	ACGGA	2 cut(s)	410, 566
VpaK11BI	GGWCC	2 cut(s)	433, 553
XspI	CTAG	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.