Belongs to the universal ribosomal protein uS4 family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PRONE | PF03759 | 102 - 475 | 4e-174 | PRONE (Plant-specific Rop nucleotide exchanger) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1004 |
| Acc16I | TGCGCA | 1 cut(s) | 871 |
| Acc36I | ACCTGC | 1 cut(s) | 631 |
| AccB1I | GGYRCC | 3 cut(s) | 463, 486, 1475 |
| AccBSI | CCGCTC | 2 cut(s) | 61, 600 |
| AccI | GTMKAC | 3 cut(s) | 763, 1410, 1619 |
| AccIII | TCCGGA | 1 cut(s) | 182 |
| AciI | CCGC | 6 cut(s) | 61, 176, 211, 598, 1479, 1602 |
| AclWI | GGATC | 3 cut(s) | 612, 874, 1565 |
| AcoI | YGGCCR | 1 cut(s) | 897 |
| AcsI | RAATTY | 2 cut(s) | 554, 1666 |
| AcuI | CTGAAG | 1 cut(s) | 1160 |
| AfaI | GTAC | 3 cut(s) | 118, 813, 1064 |
| AflII | CTTAAG | 1 cut(s) | 884 |
| AgsI | TTSAA | 6 cut(s) | 314, 771, 1076, 1375, 1526, 1548 |
| AhlI | ACTAGT | 1 cut(s) | 113 |
| AjiI | CACGTC | 1 cut(s) | 43 |
| AjnI | CCWGG | 6 cut(s) | 559, 1044, 1166, 1267, 1349, 1597 |
| Alw21I | GWGCWC | 1 cut(s) | 537 |
| Alw26I | GTCTC | 3 cut(s) | 22, 1108, 1455 |
| AlwI | GGATC | 3 cut(s) | 612, 874, 1565 |
| Ama87I | CYCGRG | 1 cut(s) | 1227 |
| Aor13HI | TCCGGA | 1 cut(s) | 182 |
| AoxI | GGCC | 5 cut(s) | 240, 888, 897, 1270, 1540 |
| ApeKI | GCWGC | 8 cut(s) | 223, 649, 853, 1097, 1100, 1433, 1436, 1648 |
| ApoI | RAATTY | 2 cut(s) | 554, 1666 |
| AspLEI | GCGC | 2 cut(s) | 223, 872 |
| AspS9I | GGNCC | 3 cut(s) | 185, 1048, 1541 |
| AsuHPI | GGTGA | 1 cut(s) | 1208 |
| AvaI | CYCGRG | 1 cut(s) | 1227 |
| AvaII | GGWCC | 2 cut(s) | 185, 1048 |
| BaeGI | GKGCMC | 1 cut(s) | 1329 |
| BalI | TGGCCA | 1 cut(s) | 899 |
| BanI | GGYRCC | 3 cut(s) | 463, 486, 1475 |
| BanII | GRGCYC | 1 cut(s) | 537 |
| BbsI | GAAGAC | 3 cut(s) | 45, 293, 1025 |
| Bbv12I | GWGCWC | 1 cut(s) | 537 |
| BbvI | GCAGC | 8 cut(s) | 210, 636, 865, 1084, 1087, 1423, 1445, 1635 |
| BccI | CCATC | 6 cut(s) | 416, 550, 659, 908, 1143, 1247 |
| BceAI | ACGGC | 2 cut(s) | 234, 1299 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 131, 165 |
| BciT130I | CCWGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| BciVI | GTATCC | 1 cut(s) | 1251 |
| BcoDI | GTCTC | 3 cut(s) | 22, 1108, 1455 |
| BcuI | ACTAGT | 1 cut(s) | 113 |
| BfaI | CTAG | 4 cut(s) | 114, 120, 980, 1220 |
| BfmI | CTRYAG | 2 cut(s) | 73, 859 |
| BfoI | RGCGCY | 1 cut(s) | 224 |
| BfrI | CTTAAG | 1 cut(s) | 884 |
| BfuAI | ACCTGC | 1 cut(s) | 631 |
| BfuI | GTATCC | 1 cut(s) | 1251 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 896 |
| BlpI | GCTNAGC | 2 cut(s) | 653, 1366 |
| BmcAI | AGTACT | 1 cut(s) | 118 |
| Bme1390I | CCNGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| Bme18I | GGWCC | 2 cut(s) | 185, 1048 |
| BmeT110I | CYCGRG | 1 cut(s) | 1227 |
| BmgBI | CACGTC | 1 cut(s) | 43 |
| BmgT120I | GGNCC | 3 cut(s) | 185, 1048, 1541 |
| BmiI | GGNNCC | 5 cut(s) | 456, 465, 488, 797, 1477 |
| BmrFI | CCNGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| BmsI | GCATC | 4 cut(s) | 631, 928, 1405, 1621 |
| BpiI | GAAGAC | 3 cut(s) | 45, 293, 1025 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 653, 1366 |
| BpuEI | CTTGAG | 5 cut(s) | 73, 100, 534, 614, 1358 |
| BsaAI | YACGTR | 1 cut(s) | 1408 |
| BsaJI | CCNNGG | 7 cut(s) | 559, 700, 894, 1167, 1267, 1350, 1597 |
| BsaWI | WCCGGW | 2 cut(s) | 182, 187 |
| Bse118I | RCCGGY | 3 cut(s) | 226, 238, 1558 |
| Bse1I | ACTGG | 1 cut(s) | 642 |
| Bse3DI | GCAATG | 6 cut(s) | 379, 486, 651, 848, 1446, 1569 |
| BseAI | TCCGGA | 1 cut(s) | 182 |
| BseBI | CCWGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| BseDI | CCNNGG | 7 cut(s) | 559, 700, 894, 1167, 1267, 1350, 1597 |
| BseGI | GGATG | 5 cut(s) | 646, 670, 1163, 1324, 1573 |
| BseMI | GCAATG | 6 cut(s) | 379, 486, 651, 848, 1446, 1569 |
| BseMII | CTCAG | 2 cut(s) | 282, 297 |
| BseNI | ACTGG | 1 cut(s) | 642 |
| BseRI | GAGGAG | 1 cut(s) | 1522 |
| BseSI | GKGCMC | 1 cut(s) | 1329 |
| BseXI | GCAGC | 8 cut(s) | 210, 636, 865, 1084, 1087, 1423, 1445, 1635 |
| BsgI | GTGCAG | 3 cut(s) | 367, 1086, 1452 |
| BshFI | GGCC | 5 cut(s) | 242, 890, 899, 1272, 1542 |
| BshNI | GGYRCC | 3 cut(s) | 463, 486, 1475 |
| BsiHKAI | GWGCWC | 1 cut(s) | 537 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1227 |
| BsiSI | CCGG | 6 cut(s) | 183, 188, 227, 239, 272, 1559 |
| BslFI | GGGAC | 2 cut(s) | 579, 583 |
| BsmAI | GTCTC | 3 cut(s) | 22, 1108, 1455 |
| BsmBI | CGTCTC | 1 cut(s) | 22 |
| BsmFI | GGGAC | 2 cut(s) | 579, 583 |
| BsmI | GAATGC | 1 cut(s) | 872 |
| BsnI | GGCC | 5 cut(s) | 242, 890, 899, 1272, 1542 |
| BsoBI | CYCGRG | 1 cut(s) | 1227 |
| Bsp1286I | GDGCHC | 2 cut(s) | 537, 1329 |
| Bsp13I | TCCGGA | 1 cut(s) | 182 |
| Bsp143I | GATC | 6 cut(s) | 604, 746, 879, 1012, 1396, 1570 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 653, 1366 |
| Bsp19I | CCATGG | 1 cut(s) | 894 |
| BspACI | CCGC | 6 cut(s) | 61, 176, 211, 598, 1479, 1602 |
| BspANI | GGCC | 5 cut(s) | 242, 890, 899, 1272, 1542 |
| BspCNI | CTCAG | 2 cut(s) | 283, 298 |
| BspEI | TCCGGA | 1 cut(s) | 182 |
| BspLI | GGNNCC | 5 cut(s) | 456, 465, 488, 797, 1477 |
| BspMI | ACCTGC | 1 cut(s) | 631 |
| BspPI | GGATC | 3 cut(s) | 612, 874, 1565 |
| BspT107I | GGYRCC | 3 cut(s) | 463, 486, 1475 |
| BspTI | CTTAAG | 1 cut(s) | 884 |
| BsrBI | CCGCTC | 2 cut(s) | 61, 600 |
| BsrDI | GCAATG | 6 cut(s) | 379, 486, 651, 848, 1446, 1569 |
| BsrFI | RCCGGY | 3 cut(s) | 226, 238, 1558 |
| BsrI | ACTGG | 1 cut(s) | 642 |
| BssAI | RCCGGY | 3 cut(s) | 226, 238, 1558 |
| BssECI | CCNNGG | 7 cut(s) | 559, 700, 894, 1167, 1267, 1350, 1597 |
| BssMI | GATC | 6 cut(s) | 604, 746, 879, 1012, 1396, 1570 |
| BssT1I | CCWWGG | 1 cut(s) | 894 |
| Bst2UI | CCWGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| Bst4CI | ACNGT | 5 cut(s) | 430, 860, 998, 1263, 1631 |
| Bst6I | CTCTTC | 3 cut(s) | 760, 777, 1490 |
| BstAFI | CTTAAG | 1 cut(s) | 884 |
| BstBAI | YACGTR | 1 cut(s) | 1408 |
| BstC8I | GCNNGC | 7 cut(s) | 59, 240, 918, 956, 1146, 1420, 1424 |
| BstDEI | CTNAG | 5 cut(s) | 291, 306, 653, 1253, 1366 |
| BstDSI | CCRYGG | 1 cut(s) | 894 |
| BstF5I | GGATG | 5 cut(s) | 646, 670, 1163, 1324, 1573 |
| BstH2I | RGCGCY | 1 cut(s) | 224 |
| BstHHI | GCGC | 2 cut(s) | 223, 872 |
| BstKTI | GATC | 6 cut(s) | 607, 749, 882, 1015, 1399, 1573 |
| BstMAI | GTCTC | 3 cut(s) | 22, 1108, 1455 |
| BstMBI | GATC | 6 cut(s) | 604, 746, 879, 1012, 1396, 1570 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 896, 1229 |
| BstNI | CCWGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| BstSCI | CCNGG | 6 cut(s) | 559, 1044, 1166, 1267, 1349, 1597 |
| BstSFI | CTRYAG | 2 cut(s) | 73, 859 |
| BstSLI | GKGCMC | 1 cut(s) | 1329 |
| BstSNI | TACGTA | 1 cut(s) | 1408 |
| BstV1I | GCAGC | 8 cut(s) | 210, 636, 865, 1084, 1087, 1423, 1445, 1635 |
| BstV2I | GAAGAC | 3 cut(s) | 45, 293, 1025 |
| BstX2I | RGATCY | 2 cut(s) | 604, 879 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1357 |
| BstYI | RGATCY | 2 cut(s) | 604, 879 |
| BsuI | GTATCC | 1 cut(s) | 1251 |
| BsuRI | GGCC | 5 cut(s) | 242, 890, 899, 1272, 1542 |
| BtgI | CCRYGG | 1 cut(s) | 894 |
| BtgZI | GCGATG | 1 cut(s) | 290 |
| BtrI | CACGTC | 1 cut(s) | 43 |
| BtsCI | GGATG | 5 cut(s) | 646, 670, 1163, 1324, 1573 |
| BtsI | GCAGTG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 2 cut(s) | 384, 856 |
| BveI | ACCTGC | 1 cut(s) | 631 |
| Cac8I | GCNNGC | 7 cut(s) | 59, 240, 918, 956, 1146, 1420, 1424 |
| CfoI | GCGC | 2 cut(s) | 223, 872 |
| Cfr10I | RCCGGY | 3 cut(s) | 226, 238, 1558 |
| Cfr13I | GGNCC | 3 cut(s) | 185, 1048, 1541 |
| CpoI | CGGWCCG | 1 cut(s) | 185 |
| Csp6I | GTAC | 3 cut(s) | 117, 812, 1063 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1519, 1554 |
| CspI | CGGWCCG | 1 cut(s) | 185 |
| CviAII | CATG | 8 cut(s) | 149, 163, 232, 895, 1201, 1294, 1357, 1652 |
| CviQI | GTAC | 3 cut(s) | 117, 812, 1063 |
| DdeI | CTNAG | 5 cut(s) | 291, 306, 653, 1253, 1366 |
| DpnI | GATC | 6 cut(s) | 606, 748, 881, 1014, 1398, 1572 |
| DpnII | GATC | 6 cut(s) | 604, 746, 879, 1012, 1396, 1570 |
| DraI | TTTAAA | 1 cut(s) | 1638 |
| EaeI | YGGCCR | 1 cut(s) | 897 |
| Eam1104I | CTCTTC | 3 cut(s) | 760, 777, 1490 |
| EarI | CTCTTC | 3 cut(s) | 760, 777, 1490 |
| EciI | GGCGGA | 1 cut(s) | 1617 |
| Ecl136II | GAGCTC | 1 cut(s) | 535 |
| Eco105I | TACGTA | 1 cut(s) | 1408 |
| Eco130I | CCWWGG | 1 cut(s) | 894 |
| Eco147I | AGGCCT | 1 cut(s) | 890 |
| Eco24I | GRGCYC | 1 cut(s) | 537 |
| Eco47I | GGWCC | 2 cut(s) | 185, 1048 |
| Eco53kI | GAGCTC | 1 cut(s) | 535 |
| Eco57I | CTGAAG | 1 cut(s) | 1160 |
| Eco88I | CYCGRG | 1 cut(s) | 1227 |
| EcoICRI | GAGCTC | 1 cut(s) | 535 |
| EcoRI | GAATTC | 1 cut(s) | 554 |
| EcoRII | CCWGG | 6 cut(s) | 559, 1044, 1166, 1267, 1349, 1597 |
| EcoT14I | CCWWGG | 1 cut(s) | 894 |
| EcoT38I | GRGCYC | 1 cut(s) | 537 |
| ErhI | CCWWGG | 1 cut(s) | 894 |
| Esp3I | CGTCTC | 1 cut(s) | 22 |
| FaeI | CATG | 8 cut(s) | 152, 166, 235, 898, 1204, 1297, 1360, 1655 |
| FaqI | GGGAC | 2 cut(s) | 579, 583 |
| FatI | CATG | 8 cut(s) | 148, 162, 231, 894, 1200, 1293, 1356, 1651 |
| FauI | CCCGC | 1 cut(s) | 605 |
| FblI | GTMKAC | 3 cut(s) | 763, 1410, 1619 |
| FokI | GGATG | 5 cut(s) | 653, 677, 1150, 1331, 1580 |
| FriOI | GRGCYC | 1 cut(s) | 537 |
| FspAI | RTGCGCAY | 1 cut(s) | 871 |
| FspBI | CTAG | 4 cut(s) | 114, 120, 980, 1220 |
| FspI | TGCGCA | 1 cut(s) | 871 |
| GlaI | GCGC | 2 cut(s) | 222, 871 |
| HaeII | RGCGCY | 1 cut(s) | 224 |
| HaeIII | GGCC | 5 cut(s) | 242, 890, 899, 1272, 1542 |
| HapII | CCGG | 6 cut(s) | 183, 188, 227, 239, 272, 1559 |
| HhaI | GCGC | 2 cut(s) | 223, 872 |
| Hin1II | CATG | 8 cut(s) | 152, 166, 235, 898, 1204, 1297, 1360, 1655 |
| Hin6I | GCGC | 2 cut(s) | 221, 870 |
| HinP1I | GCGC | 2 cut(s) | 221, 870 |
| HincII | GTYRAC | 2 cut(s) | 13, 697 |
| HindII | GTYRAC | 2 cut(s) | 13, 697 |
| HindIII | AAGCTT | 4 cut(s) | 338, 972, 1214, 1363 |
| HinfI | GANTC | 7 cut(s) | 98, 378, 521, 677, 1249, 1303, 1510 |
| HpaII | CCGG | 6 cut(s) | 183, 188, 227, 239, 272, 1559 |
| HphI | GGTGA | 1 cut(s) | 1208 |
| Hpy166II | GTNNAC | 7 cut(s) | 13, 254, 697, 764, 1065, 1411, 1620 |
| Hpy8I | GTNNAC | 7 cut(s) | 13, 254, 697, 764, 1065, 1411, 1620 |
| Hpy99I | CGWCG | 1 cut(s) | 31 |
| HpyCH4III | ACNGT | 5 cut(s) | 430, 860, 998, 1263, 1631 |
| HpyCH4IV | ACGT | 6 cut(s) | 15, 42, 90, 256, 1407, 1429 |
| HpyCH4V | TGCA | 8 cut(s) | 335, 384, 644, 853, 1103, 1433, 1439, 1651 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 896, 1229 |
| HpyF3I | CTNAG | 5 cut(s) | 291, 306, 653, 1253, 1366 |
| HpySE526I | ACGT | 6 cut(s) | 15, 42, 90, 256, 1407, 1429 |
| Hsp92II | CATG | 8 cut(s) | 152, 166, 235, 898, 1204, 1297, 1360, 1655 |
| HspAI | GCGC | 2 cut(s) | 221, 870 |
| Kpn2I | TCCGGA | 1 cut(s) | 182 |
| KroI | GCCGGC | 1 cut(s) | 238 |
| KroNI | GCCGGC | 1 cut(s) | 240 |
| Kzo9I | GATC | 6 cut(s) | 604, 746, 879, 1012, 1396, 1570 |
| LmnI | GCTCC | 2 cut(s) | 454, 801 |
| Lsp1109I | GCAGC | 8 cut(s) | 210, 636, 865, 1084, 1087, 1423, 1445, 1635 |
| LweI | GCATC | 4 cut(s) | 631, 928, 1405, 1621 |
| MaeI | CTAG | 4 cut(s) | 114, 120, 980, 1220 |
| MaeII | ACGT | 6 cut(s) | 15, 42, 90, 256, 1407, 1429 |
| MaeIII | GTNAC | 2 cut(s) | 586, 1196 |
| MalI | GATC | 6 cut(s) | 606, 748, 881, 1014, 1398, 1572 |
| MbiI | CCGCTC | 2 cut(s) | 61, 600 |
| MboI | GATC | 6 cut(s) | 604, 746, 879, 1012, 1396, 1570 |
| MflI | RGATCY | 2 cut(s) | 604, 879 |
| MhlI | GDGCHC | 2 cut(s) | 537, 1329 |
| MlsI | TGGCCA | 1 cut(s) | 899 |
| MluCI | AATT | 7 cut(s) | 314, 554, 708, 771, 1521, 1633, 1666 |
| MluNI | TGGCCA | 1 cut(s) | 899 |
| MlyI | GAGTC | 3 cut(s) | 107, 387, 1519 |
| MmeI | TCCRAC | 4 cut(s) | 9, 81, 113, 432 |
| Mox20I | TGGCCA | 1 cut(s) | 899 |
| MroI | TCCGGA | 1 cut(s) | 182 |
| MroNI | GCCGGC | 1 cut(s) | 238 |
| MscI | TGGCCA | 1 cut(s) | 899 |
| MseI | TTAA | 2 cut(s) | 885, 1637 |
| Msp20I | TGGCCA | 1 cut(s) | 899 |
| MspA1I | CMGCKG | 1 cut(s) | 1436 |
| MspCI | CTTAAG | 1 cut(s) | 884 |
| MspI | CCGG | 6 cut(s) | 183, 188, 227, 239, 272, 1559 |
| MspR9I | CCNGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| Mva1269I | GAATGC | 1 cut(s) | 872 |
| MvaI | CCWGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 896, 1229 |
| NaeI | GCCGGC | 1 cut(s) | 240 |
| NcoI | CCATGG | 1 cut(s) | 894 |
| NdeII | GATC | 6 cut(s) | 604, 746, 879, 1012, 1396, 1570 |
| NgoMIV | GCCGGC | 1 cut(s) | 238 |
| NlaIII | CATG | 8 cut(s) | 152, 166, 235, 898, 1204, 1297, 1360, 1655 |
| NlaIV | GGNNCC | 5 cut(s) | 456, 465, 488, 797, 1477 |
| NmeAIII | GCCGAG | 1 cut(s) | 515 |
| NmuCI | GTSAC | 2 cut(s) | 586, 1196 |
| NsbI | TGCGCA | 1 cut(s) | 871 |
| PceI | AGGCCT | 1 cut(s) | 890 |
| PctI | GAATGC | 1 cut(s) | 872 |
| PdiI | GCCGGC | 1 cut(s) | 240 |
| PfeI | GAWTC | 4 cut(s) | 521, 677, 1249, 1303 |
| PleI | GAGTC | 3 cut(s) | 106, 386, 1518 |
| PpsI | GAGTC | 3 cut(s) | 106, 386, 1518 |
| Ppu21I | YACGTR | 1 cut(s) | 1408 |
| PsiI | TTATAA | 1 cut(s) | 1004 |
| Psp124BI | GAGCTC | 1 cut(s) | 537 |
| Psp6I | CCWGG | 6 cut(s) | 559, 1044, 1166, 1267, 1349, 1597 |
| PspGI | CCWGG | 6 cut(s) | 559, 1044, 1166, 1267, 1349, 1597 |
| PspN4I | GGNNCC | 5 cut(s) | 456, 465, 488, 797, 1477 |
| PspPI | GGNCC | 3 cut(s) | 185, 1048, 1541 |
| PsuI | RGATCY | 2 cut(s) | 604, 879 |
| PvuII | CAGCTG | 1 cut(s) | 1436 |
| RsaI | GTAC | 3 cut(s) | 118, 813, 1064 |
| RsaNI | GTAC | 3 cut(s) | 117, 812, 1063 |
| Rsr2I | CGGWCCG | 1 cut(s) | 185 |
| RsrII | CGGWCCG | 1 cut(s) | 185 |
| SacI | GAGCTC | 1 cut(s) | 537 |
| SaqAI | TTAA | 2 cut(s) | 885, 1637 |
| Sau3AI | GATC | 6 cut(s) | 604, 746, 879, 1012, 1396, 1570 |
| Sau96I | GGNCC | 3 cut(s) | 185, 1048, 1541 |
| ScaI | AGTACT | 1 cut(s) | 118 |
| SchI | GAGTC | 3 cut(s) | 107, 387, 1519 |
| ScrFI | CCNGG | 6 cut(s) | 561, 1046, 1168, 1269, 1351, 1599 |
| SduI | GDGCHC | 2 cut(s) | 537, 1329 |
| SfaNI | GCATC | 4 cut(s) | 631, 928, 1405, 1621 |
| SfcI | CTRYAG | 2 cut(s) | 73, 859 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 896 |
| SinI | GGWCC | 2 cut(s) | 185, 1048 |
| SmiI | ATTTAAAT | 1 cut(s) | 1638 |
| SmlI | CTYRAG | 6 cut(s) | 52, 79, 549, 629, 884, 1337 |
| SmoI | CTYRAG | 6 cut(s) | 52, 79, 549, 629, 884, 1337 |
| SnaBI | TACGTA | 1 cut(s) | 1408 |
| SpeI | ACTAGT | 1 cut(s) | 113 |
| Sse9I | AATT | 7 cut(s) | 314, 554, 708, 771, 1521, 1633, 1666 |
| SseBI | AGGCCT | 1 cut(s) | 890 |
| SsiI | CCGC | 6 cut(s) | 61, 176, 211, 598, 1479, 1602 |
| SspMI | CTAG | 4 cut(s) | 114, 120, 980, 1220 |
| SstI | GAGCTC | 1 cut(s) | 537 |
| StuI | AGGCCT | 1 cut(s) | 890 |
| StyD4I | CCNGG | 6 cut(s) | 559, 1044, 1166, 1267, 1349, 1597 |
| StyI | CCWWGG | 1 cut(s) | 894 |
| SwaI | ATTTAAAT | 1 cut(s) | 1638 |
| TaaI | ACNGT | 5 cut(s) | 430, 860, 998, 1263, 1631 |
| TaiI | ACGT | 6 cut(s) | 18, 45, 93, 259, 1410, 1432 |
| TaqI | TCGA | 2 cut(s) | 66, 1445 |
| TaqII | GACCGA | 1 cut(s) | 714 |
| TasI | AATT | 7 cut(s) | 314, 554, 708, 771, 1521, 1633, 1666 |
| TatI | WGTACW | 2 cut(s) | 116, 1062 |
| TauI | GCSGC | 2 cut(s) | 178, 1481 |
| TfiI | GAWTC | 4 cut(s) | 521, 677, 1249, 1303 |
| Tru1I | TTAA | 2 cut(s) | 885, 1637 |
| Tru9I | TTAA | 2 cut(s) | 885, 1637 |
| TscAI | CASTG | 2 cut(s) | 391, 863 |
| TseFI | GTSAC | 2 cut(s) | 586, 1196 |
| TseI | GCWGC | 8 cut(s) | 223, 649, 853, 1097, 1100, 1433, 1436, 1648 |
| Tsp45I | GTSAC | 2 cut(s) | 586, 1196 |
| TspDTI | ATGAA | 2 cut(s) | 51, 335 |
| TspGWI | ACGGA | 1 cut(s) | 296 |
| TspRI | CASTG | 2 cut(s) | 391, 863 |
| Vha464I | CTTAAG | 1 cut(s) | 884 |
| VpaK11BI | GGWCC | 2 cut(s) | 185, 1048 |
| XapI | RAATTY | 2 cut(s) | 554, 1666 |
| XmiI | GTMKAC | 3 cut(s) | 763, 1410, 1619 |
| XspI | CTAG | 4 cut(s) | 114, 120, 980, 1220 |
| ZrmI | AGTACT | 1 cut(s) | 118 |