Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

36394332 .. 36399264

Gene Structure 4933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTCAGGTACAAAAAGGGTGAGCATGGGAAGAAAAAAAGTTGAAATGATCAAACTTGAAGCTTTTGCCAAAACCAGACTGGAGCTCTATTTTGCAGGTATGCAACTCGTGGATGTGGAGATAATGAAAATCCAGATGGTCTCGGAGGAGATCAGCCATCGCTCGAGGAGCAGAGCACCTCGTCACTCCTCTGCTATCTCCTCAATCCTCGACAAGTTCAAGAATGTAGAGAAGCCAAGACATCCTTATGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCGCAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCTGCATCAGTAATGCTGCTAGGGAACTTCTTACTCTGGACAAGAAAAATCCTCGCCGTATCTTTAGACCCAGTTGTGGTTATGTTTTATTTTGTTTAATGTGCTTATGGGAGGTTGTCCTAATTGGAAAAGGTGTTGTGGTTGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

177

Amino Acids

20.39

Weight (kDa)

9.8

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AciI	CCGC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	3 cut(s)	31, 52, 528
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	3 cut(s)	86, 101, 262
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	5 cut(s)	104, 127, 316, 322, 384
AluI	AGCT	5 cut(s)	104, 127, 316, 322, 384
Alw21I	GWGCWC	2 cut(s)	129, 220
Alw26I	GTCTC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	384, 398
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	19, 73
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	149
Bbv12I	GWGCWC	2 cut(s)	129, 220
BbvI	GCAGC	2 cut(s)	371, 385
BccI	CCATC	2 cut(s)	172, 207
BceAI	ACGGC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	2 cut(s)	385, 399
BlsI	GCNGC	2 cut(s)	386, 400
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	3 cut(s)	126, 370, 453
BseGI	GGATG	3 cut(s)	160, 283, 313
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseNI	ACTGG	3 cut(s)	126, 370, 453
BseRI	GAGGAG	4 cut(s)	203, 220, 223, 232
BseXI	GCAGC	2 cut(s)	371, 385
BsiHKAI	GWGCWC	2 cut(s)	129, 220
BsiHKCI	CYCGRG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	368
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	129, 220
Bsp143I	GATC	2 cut(s)	90, 192
BspACI	CCGC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	187
BsrI	ACTGG	3 cut(s)	126, 370, 453
BssMI	GATC	2 cut(s)	90, 192
BssSI	CACGAG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	160, 283, 313
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	93, 195
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	90, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	371, 385
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	3 cut(s)	160, 283, 313
BveI	ACCTGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	3 cut(s)	30, 51, 527
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	8 cut(s)	104, 127, 198, 277, 316, 322, 340, 384
CviKI_1	RGCY	8 cut(s)	104, 127, 198, 277, 316, 322, 340, 384
CviQI	GTAC	3 cut(s)	30, 51, 527
DpnI	GATC	2 cut(s)	92, 194
DpnII	GATC	2 cut(s)	90, 192
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	1 cut(s)	70
FaiI	YATR	7 cut(s)	68, 143, 291, 336, 375, 465, 490
FalI	AAGNNNNNCTT	4 cut(s)	271, 303, 341, 373
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	385, 399
FokI	GGATG	3 cut(s)	167, 270, 320
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	385, 399
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	385, 399
GsuI	CTGGAG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	2 cut(s)	102, 320
HphI	GGTGA	2 cut(s)	19, 73
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	175, 262, 419
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	137, 145, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	90, 192
LmnI	GCTCC	2 cut(s)	124, 210
LpnPI	CCDG	8 cut(s)	33, 107, 123, 130, 188, 383, 404, 466
Lsp1109I	GCAGC	2 cut(s)	371, 385
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	7, 224
MalI	GATC	2 cut(s)	92, 194
MboI	GATC	2 cut(s)	90, 192
MboII	GAAGA	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	129, 220
MluCI	AATT	1 cut(s)	504
MmeI	TCCRAC	1 cut(s)	307
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	2 cut(s)	288, 306
MwoI	GCNNNNNNNGC	1 cut(s)	210
NdeII	GATC	2 cut(s)	90, 192
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	2 cut(s)	7, 224
PaeR7I	CTCGAG	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	386, 400
Psp124BI	GAGCTC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	367
PspXI	VCTCGAGB	1 cut(s)	205
RsaI	GTAC	3 cut(s)	31, 52, 528
RsaNI	GTAC	3 cut(s)	30, 51, 527
RseI	CAYNNNNRTG	2 cut(s)	288, 306
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	2 cut(s)	385, 399
Sau3AI	GATC	2 cut(s)	90, 192
Sau96I	GGNCC	1 cut(s)	367
SduI	GDGCHC	2 cut(s)	129, 220
SfaNI	GCATC	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	288, 306
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	129
TaqI	TCGA	2 cut(s)	206, 252
TasI	AATT	1 cut(s)	504
TatI	WGTACW	1 cut(s)	526
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseFI	GTSAC	2 cut(s)	7, 224
TseI	GCWGC	2 cut(s)	384, 398
Tsp45I	GTSAC	2 cut(s)	7, 224
TspDTI	ATGAA	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	205
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.