Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

10575499 .. 10576155

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAGACAATGTTCATGTTTAGAGAAGCCAAGACGTCCTTTTGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGAAGAATATGGGCTTCGGCGCAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCCACATCTGTAATGCTGCTAGGGAACTTCTTACTCTGGACAAGAAAAATCCTCGCCGTATCTTTAGACCCAGTTGTGGTTATGTTTTATTTTGTTTAATGTGCTTATGGGAGGTTGTCCTAATTGGAAAAAGTGTTGGGGTTGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

94

Amino Acids

11.16

Weight (kDa)

9.35

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	2 cut(s)	67, 73
AluI	AGCT	2 cut(s)	67, 73
ApeKI	GCWGC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	121, 204
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseNI	ACTGG	2 cut(s)	121, 204
BseXI	GCAGC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	121, 204
BssNI	GRCGYC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	5 cut(s)	28, 67, 73, 91, 135
CviKI_1	RGCY	5 cut(s)	28, 67, 73, 91, 135
CviQI	GTAC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	89
FaeI	CATG	1 cut(s)	18
FaiI	YATR	5 cut(s)	16, 87, 126, 216, 241
FalI	AAGNNNNNCTT	4 cut(s)	22, 54, 92, 124
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	18
HspAI	GCGC	1 cut(s)	97
LpnPI	CCDG	3 cut(s)	134, 155, 217
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	34
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	1 cut(s)	255
MnlI	CCTC	4 cut(s)	96, 108, 195, 238
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	57
NlaIII	CATG	1 cut(s)	18
NlaIV	GGNNCC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	118
SetI	ASST	4 cut(s)	37, 69, 75, 249
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	153
TaiI	ACGT	1 cut(s)	37
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	118
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.